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Michael J. Sweredoski, Ph.D. - Publications

Affiliations: 
2008 University of California, Irvine, Irvine, CA 
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19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Sung MK, Porras-Yakushi TR, Reitsma JM, Huber FM, Sweredoski MJ, Hoelz A, Hess S, Deshaies RJ. A conserved quality-control pathway that mediates degradation of unassembled ribosomal proteins. Elife. 5. PMID 27552055 DOI: 10.7554/Elife.19105  0.383
2016 Sung MK, Reitsma JM, Sweredoski MJ, Hess S, Deshaies RJ. Ribosomal proteins produced in excess are degraded by the ubiquitin-proteasome system. Molecular Biology of the Cell. PMID 27385339 DOI: 10.1091/Mbc.E16-05-0290  0.408
2016 Mosadeghi R, Reichermeier KM, Winkler M, Schreiber A, Reitsma JM, Zhang Y, Stengel F, Cao J, Kim M, Sweredoski MJ, Hess S, Leitner A, Aebersold R, Peter M, Deshaies RJ, et al. Structural and kinetic analysis of the COP9-Signalosome activation and the cullin-RING ubiquitin ligase deneddylation cycle. Elife. 5. PMID 27031283 DOI: 10.7554/Elife.12102  0.307
2016 Nguyen TV, Lee JE, Sweredoski MJ, Yang SJ, Jeon SJ, Harrison JS, Yim JH, Lee SG, Handa H, Kuhlman B, Jeong JS, Reitsma JM, Park CS, Hess S, Deshaies RJ. Glutamine Triggers Acetylation-Dependent Degradation of Glutamine Synthetase via the Thalidomide Receptor Cereblon. Molecular Cell. 61: 809-820. PMID 26990986 DOI: 10.1016/J.Molcel.2016.02.032  0.339
2015 McHugh CA, Chen CK, Chow A, Surka CF, Tran C, McDonel P, Pandya-Jones A, Blanco M, Burghard C, Moradian A, Sweredoski MJ, Shishkin AA, Su J, Lander ES, Hess S, et al. The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3. Nature. 521: 232-6. PMID 25915022 DOI: 10.1038/Nature14443  0.311
2015 Yuet KP, Doma MK, Ngo JT, Sweredoski MJ, Graham RL, Moradian A, Hess S, Schuman EM, Sternberg PW, Tirrell DA. Cell-specific proteomic analysis in Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 112: 2705-10. PMID 25691744 DOI: 10.1073/Pnas.1421567112  0.395
2014 Mahdavi A, Szychowski J, Ngo JT, Sweredoski MJ, Graham RL, Hess S, Schneewind O, Mazmanian SK, Tirrell DA. Identification of secreted bacterial proteins by noncanonical amino acid tagging. Proceedings of the National Academy of Sciences of the United States of America. 111: 433-8. PMID 24347637 DOI: 10.1073/Pnas.1301740111  0.363
2013 Kolawa N, Sweredoski MJ, Graham RL, Oania R, Hess S, Deshaies RJ. Perturbations to the ubiquitin conjugate proteome in yeast δubx mutants identify Ubx2 as a regulator of membrane lipid composition. Molecular & Cellular Proteomics : McP. 12: 2791-803. PMID 23793018 DOI: 10.1074/Mcp.M113.030163  0.406
2013 Pierce NW, Lee JE, Liu X, Sweredoski MJ, Graham RL, Larimore EA, Rome M, Zheng N, Clurman BE, Hess S, Shan SO, Deshaies RJ. Cand1 promotes assembly of new SCF complexes through dynamic exchange of F box proteins. Cell. 153: 206-15. PMID 23453757 DOI: 10.1016/J.Cell.2013.02.024  0.375
2011 Gomez TA, Kolawa N, Gee M, Sweredoski MJ, Deshaies RJ. Identification of a functional docking site in the Rpn1 LRR domain for the UBA-UBL domain protein Ddi1. Bmc Biology. 9: 33. PMID 21627799 DOI: 10.1186/1741-7007-9-33  0.41
2011 Chan NC, Salazar AM, Pham AH, Sweredoski MJ, Kolawa NJ, Graham RL, Hess S, Chan DC. Broad activation of the ubiquitin-proteasome system by Parkin is critical for mitophagy. Human Molecular Genetics. 20: 1726-37. PMID 21296869 DOI: 10.1093/Hmg/Ddr048  0.326
2011 Lee JE, Sweredoski MJ, Graham RL, Kolawa NJ, Smith GT, Hess S, Deshaies RJ. The steady-state repertoire of human SCF ubiquitin ligase complexes does not require ongoing Nedd8 conjugation. Molecular & Cellular Proteomics : McP. 10: M110.006460. PMID 21169563 DOI: 10.1074/Mcp.M110.006460  0.325
2009 Sweredoski MJ, Baldi P. COBEpro: a novel system for predicting continuous B-cell epitopes. Protein Engineering, Design & Selection : Peds. 22: 113-20. PMID 19074155 DOI: 10.1093/Protein/Gzn075  0.525
2008 Sweredoski MJ, Baldi P. PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure. Bioinformatics (Oxford, England). 24: 1459-60. PMID 18443018 DOI: 10.1093/Bioinformatics/Btn199  0.527
2008 Randall A, Cheng J, Sweredoski M, Baldi P. TMBpro: secondary structure, beta-contact and tertiary structure prediction of transmembrane beta-barrel proteins. Bioinformatics (Oxford, England). 24: 513-20. PMID 18006547 DOI: 10.1093/Bioinformatics/Btm548  0.623
2007 Sweredoski MJ, Donovan KJ, Nguyen BD, Shaka AJ, Baldi P. Minimizing the overlap problem in protein NMR: a computational framework for precision amino acid labeling. Bioinformatics (Oxford, England). 23: 2829-35. PMID 17895278 DOI: 10.1093/Bioinformatics/Btm406  0.524
2006 Cheng J, Sweredoski MJ, Baldi P. DOMpro: Protein domain prediction using profiles, secondary structure, relative solvent accessibility, and recursive neural networks Data Mining and Knowledge Discovery. 13: 1-10. DOI: 10.1007/S10618-005-0023-5  0.579
2005 Cheng J, Randall AZ, Sweredoski MJ, Baldi P. SCRATCH: a protein structure and structural feature prediction server. Nucleic Acids Research. 33: W72-6. PMID 15980571 DOI: 10.1093/Nar/Gki396  0.618
2005 Cheng J, Sweredoski MJ, Baldi P. Accurate prediction of protein disordered regions by mining protein structure data Data Mining and Knowledge Discovery. 11: 213-222. DOI: 10.1007/S10618-005-0001-Y  0.575
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