| Year |
Citation |
Score |
| 2023 |
Bond DM, Ortega-Recalde O, Laird MK, Hayakawa T, Richardson KS, Reese FCB, Kyle B, McIsaac-Williams BE, Robertson BC, van Heezik Y, Adams AL, Chang WS, Haase B, Mountcastle J, Driller M, ... ... Jarvis ED, et al. The admixed brushtail possum genome reveals invasion history in New Zealand and novel imprinted genes. Nature Communications. 14: 6364. PMID 37848431 DOI: 10.1038/s41467-023-41784-8 |
0.303 |
|
| 2023 |
Guhlin J, Le Lec MF, Wold J, Koot E, Winter D, Biggs PJ, Galla SJ, Urban L, Foster Y, Cox MP, Digby A, Uddstrom LR, Eason D, Vercoe D, Davis T, ... ... Jarvis ED, et al. Species-wide genomics of kākāpō provides tools to accelerate recovery. Nature Ecology & Evolution. PMID 37640765 DOI: 10.1038/s41559-023-02165-y |
0.602 |
|
| 2023 |
Theissinger K, Fernandes C, Formenti G, Bista I, Berg PR, Bleidorn C, Bombarely A, Crottini A, Gallo GR, Godoy JA, Jentoft S, Malukiewicz J, Mouton A, Oomen RA, Paez S, ... ... Jarvis ED, et al. How genomics can help biodiversity conservation. Trends in Genetics : Tig. PMID 36801111 DOI: 10.1016/j.tig.2023.01.005 |
0.754 |
|
| 2023 |
Theofanopoulou C, Jarvis ED. Reply to: The case for standardizing gene nomenclature in vertebrates. Nature. 614: E33-E36. PMID 36792739 DOI: 10.1038/s41586-022-05634-9 |
0.729 |
|
| 2022 |
Kim J, Lee C, Ko BJ, Yoo DA, Won S, Phillippy AM, Fedrigo O, Zhang G, Howe K, Wood J, Durbin R, Formenti G, Brown S, Cantin L, Mello CV, ... ... Jarvis ED, et al. False gene and chromosome losses in genome assemblies caused by GC content variation and repeats. Genome Biology. 23: 204. PMID 36167554 DOI: 10.1186/s13059-022-02765-0 |
0.797 |
|
| 2022 |
Schuppe ER, Cantin L, Chakraborty M, Biegler MT, Jarvis ER, Chen CC, Hara E, Bertelsen MF, Witt CC, Jarvis ED, Fuxjager MJ. Forebrain nuclei linked to woodpecker territorial drum displays mirror those that enable vocal learning in songbirds. Plos Biology. 20: e3001751. PMID 36125990 DOI: 10.1371/journal.pbio.3001751 |
0.829 |
|
| 2022 |
Theofanopoulou C, Andirkó A, Boeckx C, Jarvis ED. Oxytocin and vasotocin receptor variation and the evolution of human prosociality. Comprehensive Psychoneuroendocrinology. 11: 100139. PMID 35757177 DOI: 10.1016/j.cpnec.2022.100139 |
0.769 |
|
| 2022 |
Formenti G, Theissinger K, Fernandes C, Bista I, Bombarely A, Bleidorn C, Ciofi C, Crottini A, Godoy JA, Höglund J, Malukiewicz J, Mouton A, Oomen RA, Paez S, Palsbøll PJ, ... ... Jarvis ED, et al. The era of reference genomes in conservation genomics. Trends in Ecology & Evolution. PMID 35086739 DOI: 10.1016/j.tree.2021.11.008 |
0.756 |
|
| 2021 |
Dussex N, van der Valk T, Morales HE, Wheat CW, Díez-Del-Molino D, von Seth J, Foster Y, Kutschera VE, Guschanski K, Rhie A, Phillippy AM, Korlach J, Howe K, Chow W, Pelan S, ... ... Jarvis ED, et al. Population genomics of the critically endangered kākāpō. Cell Genomics. 1: 100002. PMID 36777713 DOI: 10.1016/j.xgen.2021.100002 |
0.594 |
|
| 2021 |
Tobari Y, Theofanopoulou C, Mori C, Sato Y, Marutani M, Fujioka S, Konno N, Suzuki K, Furutani A, Hakataya S, Yao CT, Yang EY, Tsai CR, Tang PC, Chen CF, ... ... Jarvis ED, et al. Oxytocin variation and brain region-specific gene expression in a domesticated avian species. Genes, Brain, and Behavior. e12780. PMID 34854547 DOI: 10.1111/gbb.12780 |
0.807 |
|
| 2021 |
Cahill JA, Armstrong J, Deran A, Khoury CJ, Paten B, Haussler D, Jarvis ED. Positive selection in noncoding genomic regions of vocal learning birds is associated with genes implicated in vocal learning and speech functions in humans. Genome Research. 31: 2035-2049. PMID 34667117 DOI: 10.1101/gr.275989.121 |
0.339 |
|
| 2021 |
Tchernichovski O, Eisenberg-Edidin S, Jarvis ED. Balanced imitation sustains song culture in zebra finches. Nature Communications. 12: 2562. PMID 33963187 DOI: 10.1038/s41467-021-22852-3 |
0.663 |
|
| 2021 |
Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, ... ... Jarvis ED, et al. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 592: 737-746. PMID 33911273 DOI: 10.1038/s41586-021-03451-0 |
0.782 |
|
| 2021 |
Theofanopoulou C, Gedman G, Cahill JA, Boeckx C, Jarvis ED. Universal nomenclature for oxytocin-vasotocin ligand and receptor families. Nature. 592: 747-755. PMID 33911268 DOI: 10.1038/s41586-020-03040-7 |
0.796 |
|
| 2021 |
Yang C, Zhou Y, Marcus S, Formenti G, Bergeron LA, Song Z, Bi X, Bergman J, Rousselle MMC, Zhou C, Zhou L, Deng Y, Fang M, Xie D, Zhu Y, ... ... Jarvis ED, et al. Evolutionary and biomedical insights from a marmoset diploid genome assembly. Nature. PMID 33910227 DOI: 10.1038/s41586-021-03535-x |
0.673 |
|
| 2021 |
Choe HN, Jarvis ED. The role of sex chromosomes and sex hormones in vocal learning systems. Hormones and Behavior. 132: 104978. PMID 33895570 DOI: 10.1016/j.yhbeh.2021.104978 |
0.713 |
|
| 2021 |
Gedman G, Haase B, Durieux G, Biegler MT, Fedrigo O, Jarvis ED. As above, so below: Whole transcriptome profiling demonstrates strong molecular similarities between avian dorsal and ventral pallial subdivisions. The Journal of Comparative Neurology. PMID 33871048 DOI: 10.1002/cne.25159 |
0.82 |
|
| 2021 |
Biegler MT, Cantin LJ, Scarano DL, Jarvis ED. Controlling for activity-dependent genes and behavioral states is critical for determining brain relationships within and across species. The Journal of Comparative Neurology. PMID 33855704 DOI: 10.1002/cne.25157 |
0.807 |
|
| 2021 |
Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, ... ... Jarvis ED, et al. Author Correction: Dense sampling of bird diversity increases power of comparative genomics. Nature. PMID 33833441 DOI: 10.1038/s41586-021-03473-8 |
0.732 |
|
| 2021 |
Choe HN, Tewari J, Zhu KW, Davenport M, Matsunami H, Jarvis ED. Estrogen and sex-dependent loss of the vocal learning system in female zebra finches. Hormones and Behavior. 104911. PMID 33422557 DOI: 10.1016/j.yhbeh.2020.104911 |
0.754 |
|
| 2020 |
Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, ... ... Jarvis ED, et al. Dense sampling of bird diversity increases power of comparative genomics. Nature. 587: 252-257. PMID 33177665 DOI: 10.1038/s41586-020-2873-9 |
0.769 |
|
| 2020 |
Jebb D, Huang Z, Pippel M, Hughes GM, Lavrichenko K, Devanna P, Winkler S, Jermiin LS, Skirmuntt EC, Katzourakis A, Burkitt-Gray L, Ray DA, Sullivan KAM, Roscito JG, Kirilenko BM, ... ... Jarvis ED, et al. Six reference-quality genomes reveal evolution of bat adaptations. Nature. 583: 578-584. PMID 32699395 DOI: 10.1038/S41586-020-2486-3 |
0.427 |
|
| 2020 |
Ksepka DT, Balanoff AM, Smith NA, Bever GS, Bhullar BS, Bourdon E, Braun EL, Burleigh JG, Clarke JA, Colbert MW, Corfield JR, Degrange FJ, De Pietri VL, Early CM, Field DJ, ... ... Jarvis ED, et al. Tempo and Pattern of Avian Brain Size Evolution. Current Biology : Cb. PMID 32330422 DOI: 10.1016/J.Cub.2020.03.060 |
0.331 |
|
| 2020 |
da Fonseca RR, Couto A, Machado AM, Brejova B, Albertin CB, Silva F, Gardner P, Baril T, Hayward A, Campos A, Ribeiro ÂM, Barrio-Hernandez I, Hoving HJ, Tafur-Jimenez R, Chu C, ... ... Jarvis E, et al. A draft genome sequence of the elusive giant squid, Architeuthis dux. Gigascience. 9. PMID 31942620 DOI: 10.1093/Gigascience/Giz152 |
0.364 |
|
| 2020 |
Morin PA, Alexander A, Blaxter M, Caballero S, Fedrigo O, Fontaine MC, Foote AD, Kuraku S, Maloney B, McCarthy ML, McGowen MR, Mountcastle J, Nery MF, Olsen MT, Rosel PE, ... Jarvis ED, et al. Building genomic infrastructure: Sequencing platinum‐standard reference‐quality genomes of all cetacean species Marine Mammal Science. DOI: 10.1111/Mms.12721 |
0.37 |
|
| 2019 |
Campana MG, Corvelo A, Shelton J, Callicrate TE, Bunting KL, Riley-Gillis B, Wos F, DeGrazia J, Jarvis ED, Fleischer RC. Adaptive Radiation Genomics of Two Ecologically Divergent Hawai'ian Honeycreepers: The 'akiapōlā'au and the Hawai'i 'amakihi. The Journal of Heredity. PMID 31723957 DOI: 10.1093/Jhered/Esz057 |
0.402 |
|
| 2019 |
Jarvis ED. Evolution of vocal learning and spoken language. Science (New York, N.Y.). 366: 50-54. PMID 31604300 DOI: 10.1126/science.aax0287 |
0.337 |
|
| 2019 |
Jung KM, Kim YM, Keyte AL, Biegler MT, Rengaraj D, Lee HJ, Mello CV, Velho TAF, Fedrigo O, Haase B, Jarvis ED, Han JY. Identification and characterization of primordial germ cells in a vocal learning Neoaves species, the zebra finch. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. fj201900760RR. PMID 31604057 DOI: 10.1096/Fj.201900760Rr |
0.551 |
|
| 2019 |
Borges R, Fonseca J, Gomes C, Johnson WE, O'brien SJ, Zhang G, Gilbert MTP, Jarvis ED, Antunes A. Avian binocularity and adaptation to nocturnal environments: genomic insights from a highly-derived visual phenotype. Genome Biology and Evolution. PMID 31386143 DOI: 10.1093/Gbe/Evz111 |
0.324 |
|
| 2018 |
Wirthlin M, Lima NCB, Guedes RLM, Soares AER, Almeida LGP, Cavaleiro NP, Loss de Morais G, Chaves AV, Howard JT, Teixeira MM, Schneider PN, Santos FR, Schatz MC, Felipe MS, Miyaki CY, ... ... Jarvis ED, et al. Parrot Genomes and the Evolution of Heightened Longevity and Cognition. Current Biology : Cb. PMID 30528582 DOI: 10.1016/J.Cub.2018.10.050 |
0.804 |
|
| 2018 |
Lewin HA, Robinson GE, Kress WJ, Baker WJ, Coddington J, Crandall KA, Durbin R, Edwards SV, Forest F, Gilbert MTP, Goldstein MM, Grigoriev IV, Hackett KJ, Haussler D, Jarvis ED, et al. Earth BioGenome Project: Sequencing life for the future of life. Proceedings of the National Academy of Sciences of the United States of America. 115: 4325-4333. PMID 29686065 DOI: 10.1073/Pnas.1720115115 |
0.334 |
|
| 2018 |
Audet JN, Kayello L, Ducatez S, Perillo S, Cauchard L, Howard JT, O'Connell LA, Jarvis ED, Lefebvre L. Divergence in problem-solving skills is associated with differential expression of glutamate receptors in wild finches. Science Advances. 4: eaao6369. PMID 29546239 DOI: 10.1126/sciadv.aao6369 |
0.637 |
|
| 2017 |
Korlach J, Gedman G, Kingan SB, Chin CS, Howard JT, Audet JN, Cantin L, Jarvis ED. De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads. Gigascience. 6: 1-16. PMID 29020750 DOI: 10.1093/Gigascience/Gix085 |
0.791 |
|
| 2017 |
Theofanopoulou C, Boeckx C, Jarvis ED. A hypothesis on a role of oxytocin in the social mechanisms of speech and vocal learning. Proceedings. Biological Sciences. 284. PMID 28835557 DOI: 10.1098/Rspb.2017.0988 |
0.786 |
|
| 2017 |
Lei H, Yan Z, Sun X, Zhang Y, Wang J, Ma C, Xu Q, Wang R, Jarvis ED, Sun Z. Axon guidance pathways served as common targets for human speech/language evolution and related disorders. Brain and Language. 174: 1-8. PMID 28692932 DOI: 10.1016/j.bandl.2017.06.007 |
0.396 |
|
| 2017 |
Chakraborty M, Chen LF, Fridel EE, Klein ME, Senft RA, Sarkar A, Jarvis ED. Overexpression of human NR2B receptor subunit in LMAN causes stuttering and song sequence changes in adult zebra finches. Scientific Reports. 7: 942. PMID 28432288 DOI: 10.1038/S41598-017-00519-8 |
0.379 |
|
| 2016 |
Chabout J, Sarkar A, Patel SR, Radden T, Dunson DB, Fisher SE, Jarvis ED. A Foxp2 Mutation Implicated in Human Speech Deficits Alters Sequencing of Ultrasonic Vocalizations in Adult Male Mice. Frontiers in Behavioral Neuroscience. 10: 197. PMID 27812326 DOI: 10.3389/Fnbeh.2016.00197 |
0.338 |
|
| 2016 |
Farré M, Narayan J, Slavov GT, Damas J, Auvil L, Li C, Jarvis ED, Burt DW, Griffin DK, Larkin DM. Novel insights into chromosome evolution in birds, archosaurs, and reptiles. Genome Biology and Evolution. PMID 27401172 DOI: 10.1093/gbe/evw166 |
0.409 |
|
| 2016 |
Almeida D, Maldonado E, Khan I, Silva L, Gilbert MT, Zhang G, Jarvis ED, O'Brien SJ, Johnson WE, Antunes A. Whole genome identification, phylogeny and evolution of the cytochrome P450 family 2 (CYP2) sub-families in birds. Genome Biology and Evolution. PMID 26979796 DOI: 10.1093/Gbe/Evw041 |
0.36 |
|
| 2016 |
Jarvis ED. Perspectives from the Avian Phylogenomics Project: Questions that Can Be Answered with Sequencing All Genomes of a Vertebrate Class. Annual Review of Animal Biosciences. 4: 45-59. PMID 26884102 DOI: 10.1146/annurev-animal-021815-111216 |
0.398 |
|
| 2015 |
Chakraborty M, Jarvis ED. Brain evolution by brain pathway duplication. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370. PMID 26554045 DOI: 10.1098/Rstb.2015.0056 |
0.409 |
|
| 2015 |
Haug-Baltzell A, Jarvis ED, McCarthy FM, Lyons E. Identification of dopamine receptors across the extant avian family tree and analysis with other clades uncovers a polyploid expansion among vertebrates. Frontiers in Neuroscience. 9: 361. PMID 26500483 DOI: 10.3389/Fnins.2015.00361 |
0.319 |
|
| 2015 |
Borges R, Khan I, Johnson WE, Gilbert MT, Zhang G, Jarvis ED, O'Brien SJ, Antunes A. Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds. Bmc Genomics. 16: 751. PMID 26438339 DOI: 10.1186/S12864-015-1924-3 |
0.374 |
|
| 2015 |
Arriaga G, Macopson JJ, Jarvis ED. Transsynaptic Tracing from Peripheral Targets with Pseudorabies Virus Followed by Cholera Toxin and Biotinylated Dextran Amines Double Labeling. Journal of Visualized Experiments : Jove. PMID 26436639 DOI: 10.3791/50672 |
0.784 |
|
| 2015 |
Khan I, Yang Z, Maldonado E, Li C, Zhang G, Gilbert MT, Jarvis ED, O'Brien SJ, Johnson WE, Antunes A. Olfactory receptor subgenomes linked with broad ecological adaptations in Sauropsida. Molecular Biology and Evolution. PMID 26219582 DOI: 10.1093/Molbev/Msv155 |
0.357 |
|
| 2015 |
Ribeiro ÂM, Zepeda-Mendoza ML, Bertelsen MF, Kristensen AT, Jarvis ED, Gilbert MT, da Fonseca RR. A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis. Bmc Evolutionary Biology. 15: 124. PMID 26123414 DOI: 10.1186/s12862-015-0409-y |
0.311 |
|
| 2015 |
Chakraborty M, Walløe S, Nedergaard S, Fridel EE, Dabelsteen T, Pakkenberg B, Bertelsen MF, Dorrestein GM, Brauth SE, Durand SE, Jarvis ED. Core and Shell Song Systems Unique to the Parrot Brain. Plos One. 10: e0118496. PMID 26107173 DOI: 10.1371/Journal.Pone.0118496 |
0.432 |
|
| 2015 |
Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Alfaro-Núñez A, Narula N, et al. Phylogenomic analyses data of the avian phylogenomics project. Gigascience. 4: 4. PMID 25741440 DOI: 10.1186/S13742-014-0038-1 |
0.65 |
|
| 2015 |
Eöry L, Gilbert MT, Li C, Li B, Archibald A, Aken BL, Zhang G, Jarvis E, Flicek P, Burt DW. Avianbase: a community resource for bird genomics. Genome Biology. 16: 21. PMID 25723810 DOI: 10.1186/S13059-015-0588-2 |
0.355 |
|
| 2015 |
Wang R, Chen CC, Hara E, Rivas MV, Roulhac PL, Howard JT, Chakraborty M, Audet JN, Jarvis ED. Convergent differential regulation of SLIT-ROBO axon guidance genes in the brains of vocal learners. The Journal of Comparative Neurology. 523: 892-906. PMID 25424606 DOI: 10.1002/Cne.23719 |
0.686 |
|
| 2014 |
Li C, Zhang Y, Li J, Kong L, Hu H, Pan H, Xu L, Deng Y, Li Q, Jin L, Yu H, Chen Y, Liu B, Yang L, Liu S, ... ... Jarvis ED, et al. Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment. Gigascience. 3: 27. PMID 25671092 DOI: 10.1186/2047-217X-3-27 |
0.374 |
|
| 2014 |
Zhang G, Li B, Li C, Gilbert MT, Jarvis ED, Wang J. Comparative genomic data of the Avian Phylogenomics Project. Gigascience. 3: 26. PMID 25671091 DOI: 10.1186/2047-217X-3-26 |
0.371 |
|
| 2014 |
Pereira J, Johnson WE, O'Brien SJ, Jarvis ED, Zhang G, Gilbert MT, Vasconcelos V, Antunes A. Evolutionary genomics and adaptive evolution of the Hedgehog gene family (Shh, Ihh and Dhh) in vertebrates. Plos One. 9: e74132. PMID 25549322 DOI: 10.1371/Journal.Pone.0074132 |
0.424 |
|
| 2014 |
Pfenning AR, Hara E, Whitney O, Rivas MV, Wang R, Roulhac PL, Howard JT, Wirthlin M, Lovell PV, Ganapathy G, Mouncastle J, Moseley MA, Thompson JW, Soderblom EJ, Iriki A, ... ... Jarvis ED, et al. Convergent transcriptional specializations in the brains of humans and song-learning birds. Science (New York, N.Y.). 346: 1256846. PMID 25504733 DOI: 10.1126/Science.1256846 |
0.813 |
|
| 2014 |
Whitney O, Pfenning AR, Howard JT, Blatti CA, Liu F, Ward JM, Wang R, Audet JN, Kellis M, Mukherjee S, Sinha S, Hartemink AJ, West AE, Jarvis ED. Core and region-enriched networks of behaviorally regulated genes and the singing genome. Science (New York, N.Y.). 346: 1256780. PMID 25504732 DOI: 10.1126/Science.1256780 |
0.807 |
|
| 2014 |
Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Gutiérrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, ... ... Jarvis ED, et al. Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs. Science (New York, N.Y.). 346: 1254449. PMID 25504731 DOI: 10.1126/Science.1254449 |
0.659 |
|
| 2014 |
Meredith RW, Zhang G, Gilbert MT, Jarvis ED, Springer MS. Evidence for a single loss of mineralized teeth in the common avian ancestor. Science (New York, N.Y.). 346: 1254390. PMID 25504730 DOI: 10.1126/Science.1254390 |
0.349 |
|
| 2014 |
Zhou Q, Zhang J, Bachtrog D, An N, Huang Q, Jarvis ED, Gilbert MT, Zhang G. Complex evolutionary trajectories of sex chromosomes across bird taxa. Science (New York, N.Y.). 346: 1246338. PMID 25504727 DOI: 10.1126/Science.1246338 |
0.337 |
|
| 2014 |
Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, et al. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science (New York, N.Y.). 346: 1320-31. PMID 25504713 DOI: 10.1126/Science.1253451 |
0.783 |
|
| 2014 |
Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, ... ... Jarvis ED, et al. Comparative genomics reveals insights into avian genome evolution and adaptation. Science (New York, N.Y.). 346: 1311-20. PMID 25504712 DOI: 10.1126/Science.1251385 |
0.813 |
|
| 2014 |
Zhang G, Jarvis ED, Gilbert MT. Avian genomes. A flock of genomes. Introduction. Science (New York, N.Y.). 346: 1308-9. PMID 25504710 DOI: 10.1126/Science.346.6215.1308 |
0.316 |
|
| 2014 |
Li S, Li B, Cheng C, Xiong Z, Liu Q, Lai J, Carey HV, Zhang Q, Zheng H, Wei S, Zhang H, Chang L, Liu S, Zhang S, Yu B, ... ... Jarvis ED, et al. Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species. Genome Biology. 15: 557. PMID 25496777 DOI: 10.1186/S13059-014-0557-1 |
0.37 |
|
| 2014 |
Romanov MN, Farré M, Lithgow PE, Fowler KE, Skinner BM, O'Connor R, Fonseka G, Backström N, Matsuda Y, Nishida C, Houde P, Jarvis ED, Ellegren H, Burt DW, Larkin DM, et al. Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor. Bmc Genomics. 15: 1060. PMID 25496766 DOI: 10.1186/1471-2164-15-1060 |
0.388 |
|
| 2014 |
Weber CC, Boussau B, Romiguier J, Jarvis ED, Ellegren H. Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition. Genome Biology. 15: 549. PMID 25496599 DOI: 10.1186/S13059-014-0549-1 |
0.31 |
|
| 2014 |
Cui J, Zhao W, Huang Z, Jarvis ED, Gilbert MT, Walker PJ, Holmes EC, Zhang G. Low frequency of paleoviral infiltration across the avian phylogeny. Genome Biology. 15: 539. PMID 25496498 DOI: 10.1186/S13059-014-0539-3 |
0.366 |
|
| 2014 |
Callicrate T, Dikow R, Thomas JW, Mullikin JC, Jarvis ED, Fleischer RC. Genomic resources for the endangered Hawaiian honeycreepers. Bmc Genomics. 15: 1098. PMID 25496081 DOI: 10.1186/1471-2164-15-1098 |
0.359 |
|
| 2014 |
Wirthlin M, Lovell PV, Jarvis ED, Mello CV. Comparative genomics reveals molecular features unique to the songbird lineage. Bmc Genomics. 15: 1082. PMID 25494627 DOI: 10.1186/1471-2164-15-1082 |
0.723 |
|
| 2014 |
Kubikova L, Bosikova E, Cvikova M, Lukacova K, Scharff C, Jarvis ED. Basal ganglia function, stuttering, sequencing, and repair in adult songbirds. Scientific Reports. 4: 6590. PMID 25307086 DOI: 10.1038/srep06590 |
0.799 |
|
| 2014 |
Ganapathy G, Howard JT, Ward JM, Li J, Li B, Li Y, Xiong Y, Zhang Y, Zhou S, Schwartz DC, Schatz M, Aboukhalil R, Fedrigo O, Bukovnik L, Wang T, ... ... Jarvis ED, et al. High-coverage sequencing and annotated assemblies of the budgerigar genome. Gigascience. 3: 11. PMID 25061512 DOI: 10.1186/2047-217X-3-11 |
0.667 |
|
| 2014 |
Striedter GF, Belgard TG, Chen CC, Davis FP, Finlay BL, Güntürkün O, Hale ME, Harris JA, Hecht EE, Hof PR, Hofmann HA, Holland LZ, Iwaniuk AN, Jarvis ED, Karten HJ, et al. NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species. Brain, Behavior and Evolution. 83: 1-8. PMID 24603302 DOI: 10.1159/000360152 |
0.373 |
|
| 2014 |
Striedter GF, Belgard TG, Chen CC, Davis FP, Finlay BL, Güntürkün O, Hale ME, Harris JA, Hecht EE, Hof PR, Hofmann HA, Holland LZ, Iwaniuk AN, Jarvis ED, Karten HJ, et al. NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species. The Journal of Comparative Neurology. 522: 1445-53. PMID 24596113 DOI: 10.1002/Cne.23568 |
0.373 |
|
| 2013 |
Rosselló RA, Chen CC, Dai R, Howard JT, Hochgeschwender U, Jarvis ED. Mammalian genes induce partially reprogrammed pluripotent stem cells in non-mammalian vertebrate and invertebrate species. Elife. 2: e00036. PMID 24015354 DOI: 10.7554/eLife.00036 |
0.587 |
|
| 2013 |
Smulders TV, Jarvis ED. Different mechanisms are responsible for dishabituation of electrophysiological auditory responses to a change in acoustic identity than to a change in stimulus location. Neurobiology of Learning and Memory. 106: 163-76. PMID 23999220 DOI: 10.1016/j.nlm.2013.08.010 |
0.617 |
|
| 2013 |
Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, ... ... Jarvis ED, et al. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience. 2: 10. PMID 23870653 DOI: 10.1186/2047-217X-2-10 |
0.636 |
|
| 2013 |
Liu WC, Wada K, Jarvis ED, Nottebohm F. Rudimentary substrates for vocal learning in a suboscine. Nature Communications. 4: 2082. PMID 23823977 DOI: 10.1038/Ncomms3082 |
0.811 |
|
| 2013 |
Chen CC, Winkler CM, Pfenning AR, Jarvis ED. Molecular profiling of the developing avian telencephalon: regional timing and brain subdivision continuities. The Journal of Comparative Neurology. 521: 3666-701. PMID 23818174 DOI: 10.1002/Cne.23406 |
0.733 |
|
| 2013 |
Jarvis ED, Yu J, Rivas MV, Horita H, Feenders G, Whitney O, Jarvis SC, Jarvis ER, Kubikova L, Puck AE, Siang-Bakshi C, Martin S, McElroy M, Hara E, Howard J, et al. Global view of the functional molecular organization of the avian cerebrum: mirror images and functional columns. The Journal of Comparative Neurology. 521: 3614-65. PMID 23818122 DOI: 10.1002/Cne.23404 |
0.769 |
|
| 2013 |
Parchman TL, Gompert Z, Braun MJ, Brumfield RT, McDonald DB, Uy JA, Zhang G, Jarvis ED, Schlinger BA, Buerkle CA. The genomic consequences of adaptive divergence and reproductive isolation between species of manakins. Molecular Ecology. 22: 3304-17. PMID 23441849 DOI: 10.1111/Mec.12201 |
0.37 |
|
| 2013 |
Arriaga G, Jarvis ED. Mouse vocal communication system: are ultrasounds learned or innate? Brain and Language. 124: 96-116. PMID 23295209 DOI: 10.1016/J.Bandl.2012.10.002 |
0.807 |
|
| 2013 |
Rosselló RA, Chen C, Dai R, Howard JT, Hochgeschwender U, Jarvis ED. Author response: Mammalian genes induce partially reprogrammed pluripotent stem cells in non-mammalian vertebrate and invertebrate species Elife. DOI: 10.7554/Elife.00036.023 |
0.6 |
|
| 2013 |
Wada K, Chen CC, Jarvis ED. Detecting neural activity-dependent immediate early gene expression in the brain Methods in Neuroethological Research. 133-149. DOI: 10.1007/978-4-431-54331-2_9 |
0.652 |
|
| 2012 |
Arriaga G, Zhou EP, Jarvis ED. Of mice, birds, and men: the mouse ultrasonic song system has some features similar to humans and song-learning birds. Plos One. 7: e46610. PMID 23071596 DOI: 10.1371/Journal.Pone.0046610 |
0.796 |
|
| 2012 |
Petkov CI, Jarvis ED. Birds, primates, and spoken language origins: behavioral phenotypes and neurobiological substrates. Frontiers in Evolutionary Neuroscience. 4: 12. PMID 22912615 DOI: 10.3389/fnevo.2012.00012 |
0.362 |
|
| 2012 |
Horita H, Kobayashi M, Liu WC, Oka K, Jarvis ED, Wada K. Specialized motor-driven dusp1 expression in the song systems of multiple lineages of vocal learning birds. Plos One. 7: e42173. PMID 22876306 DOI: 10.1371/journal.pone.0042173 |
0.796 |
|
| 2012 |
Chen CC, Balaban E, Jarvis ED. Interspecies avian brain chimeras reveal that large brain size differences are influenced by cell-interdependent processes. Plos One. 7: e42477. PMID 22860132 DOI: 10.1371/journal.pone.0042477 |
0.388 |
|
| 2012 |
Koren S, Schatz MC, Walenz BP, Martin J, Howard JT, Ganapathy G, Wang Z, Rasko DA, McCombie WR, Jarvis ED, Adam M Phillippy. Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nature Biotechnology. 30: 693-700. PMID 22750884 DOI: 10.1038/Nbt.2280 |
0.618 |
|
| 2012 |
Chen CC, Wada K, Jarvis ED. Radioactive in situ hybridization for detecting diverse gene expression patterns in tissue. Journal of Visualized Experiments : Jove. PMID 22566072 DOI: 10.3791/3764 |
0.668 |
|
| 2012 |
St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, ... ... Jarvis ED, et al. Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes. Genome Biology. 13: 415. PMID 22293439 DOI: 10.1186/Gb-2012-13-1-415 |
0.636 |
|
| 2012 |
Simonyan K, Horwitz B, Jarvis ED. Dopamine regulation of human speech and bird song: a critical review. Brain and Language. 122: 142-50. PMID 22284300 DOI: 10.1016/J.Bandl.2011.12.009 |
0.313 |
|
| 2012 |
Hara E, Rivas MV, Ward JM, Okanoya K, Jarvis ED. Convergent differential regulation of parvalbumin in the brains of vocal learners. Plos One. 7: e29457. PMID 22238614 DOI: 10.1371/journal.pone.0029457 |
0.46 |
|
| 2011 |
Nabholz B, Künstner A, Wang R, Jarvis ED, Ellegren H. Dynamic evolution of base composition: causes and consequences in avian phylogenomics. Molecular Biology and Evolution. 28: 2197-210. PMID 21393604 DOI: 10.1093/Molbev/Msr047 |
0.465 |
|
| 2011 |
KÜnstner A, Wolf JBW, BackstrÖm N, Whitney O, Balakrishnan CN, Day L, Edwards SV, Janes DE, Schlinger BA, Wilson RK, Jarvis ED, Warren WC, Ellegren H. Comparative genomics based on massive paralle transcriptome sequencing reveals patterns of substitution and selection across 10 bird species (Molecular Ecology (2010) 19:SUPPL.1 (266-276)) Molecular Ecology. 20: 2871. DOI: 10.1111/j.1365-294X.2011.05169.x |
0.759 |
|
| 2010 |
Nabholz B, Jarvis ED, Ellegren H. Obtaining mtDNA genomes from next-generation transcriptome sequencing: a case study on the basal Passerida (Aves: Passeriformes) phylogeny. Molecular Phylogenetics and Evolution. 57: 466-70. PMID 20601014 DOI: 10.1016/J.Ympev.2010.06.009 |
0.371 |
|
| 2010 |
Horita H, Wada K, Rivas MV, Hara E, Jarvis ED. The dusp1 immediate early gene is regulated by natural stimuli predominantly in sensory input neurons. The Journal of Comparative Neurology. 518: 2873-901. PMID 20506480 DOI: 10.1002/cne.22370 |
0.742 |
|
| 2010 |
Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Künstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, et al. The genome of a songbird. Nature. 464: 757-62. PMID 20360741 DOI: 10.1038/Nature08819 |
0.818 |
|
| 2010 |
Künstner A, Wolf JB, Backström N, Whitney O, Balakrishnan CN, Day L, Edwards SV, Janes DE, Schlinger BA, Wilson RK, Jarvis ED, Warren WC, Ellegren H. Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species. Molecular Ecology. 19: 266-76. PMID 20331785 DOI: 10.1111/J.1365-294X.2009.04487.X |
0.785 |
|
| 2010 |
Kubikova L, Wada K, Jarvis ED. Dopamine receptors in a songbird brain. The Journal of Comparative Neurology. 518: 741-69. PMID 20058221 DOI: 10.1002/cne.22255 |
0.785 |
|
| 2010 |
Horita H, Kobayashi M, Oka K, Jarvis E, Wada K. Specialized motor-driven dusp1 expression in song nuclei of vocal learning birds Neuroscience Research. 68: e179. DOI: 10.1016/j.neures.2010.07.2367 |
0.741 |
|
| 2009 |
Hara E, Kubikova L, Hessler NA, Jarvis ED. Assessing visual requirements for social context-dependent activation of the songbird song system. Proceedings. Biological Sciences / the Royal Society. 276: 279-89. PMID 18826930 DOI: 10.1098/rspb.2008.1138 |
0.754 |
|
| 2008 |
Horita H, Wada K, Jarvis ED. Early onset of deafening-induced song deterioration and differential requirements of the pallial-basal ganglia vocal pathway. The European Journal of Neuroscience. 28: 2519-32. PMID 19087177 DOI: 10.1111/j.1460-9568.2008.06535.x |
0.746 |
|
| 2008 |
Pinaud R, Osorio C, Alzate O, Jarvis ED. Profiling of experience-regulated proteins in the songbird auditory forebrain using quantitative proteomics. The European Journal of Neuroscience. 27: 1409-22. PMID 18364021 DOI: 10.1111/j.1460-9568.2008.06102.x |
0.692 |
|
| 2008 |
Feenders G, Liedvogel M, Rivas M, Zapka M, Horita H, Hara E, Wada K, Mouritsen H, Jarvis ED. Molecular mapping of movement-associated areas in the avian brain: a motor theory for vocal learning origin. Plos One. 3: e1768. PMID 18335043 DOI: 10.1371/Journal.Pone.0001768 |
0.804 |
|
| 2007 |
Jarvis ED. Neural systems for vocal learning in birds and humans: a synopsis. Journal of Ornithology / Do-G. 148: 35-44. PMID 19684872 DOI: 10.1007/s10336-007-0243-0 |
0.376 |
|
| 2007 |
Hara E, Kubikova L, Hessler NA, Jarvis ED. Role of the midbrain dopaminergic system in modulation of vocal brain activation by social context. The European Journal of Neuroscience. 25: 3406-16. PMID 17553009 DOI: 10.1111/j.1460-9568.2007.05600.x |
0.767 |
|
| 2007 |
Kubikova L, Turner EA, Jarvis ED. The pallial basal ganglia pathway modulates the behaviorally driven gene expression of the motor pathway. The European Journal of Neuroscience. 25: 2145-60. PMID 17419760 DOI: 10.1111/j.1460-9568.2007.05368.x |
0.77 |
|
| 2007 |
Liedvogel M, Feenders G, Wada K, Troje NF, Jarvis ED, Mouritsen H. Lateralized activation of Cluster N in the brains of migratory songbirds. The European Journal of Neuroscience. 25: 1166-73. PMID 17331212 DOI: 10.1111/J.1460-9568.2007.05350.X |
0.766 |
|
| 2006 |
Ferreira AR, Smulders TV, Sameshima K, Mello CV, Jarvis ED. VOCALIZATIONS AND ASSOCIATED BEHAVIORS OF THE SOMBRE HUMMINGBIRD (APHANTOCHROA CIRRHOCHLORIS) AND THE RUFOUS-BREASTED HERMIT (GLAUCIS HIRSUTUS). The Auk. 123: 1129-1148. PMID 18802498 DOI: 10.1642/0004-8038(2006)123[1129:Vaabot]2.0.Co;2 |
0.703 |
|
| 2006 |
Smith VA, Yu J, Smulders TV, Hartemink AJ, Jarvis ED. Computational inference of neural information flow networks. Plos Computational Biology. 2: e161. PMID 17121460 DOI: 10.1371/Journal.Pcbi.0020161 |
0.7 |
|
| 2006 |
Wada K, Howard JT, McConnell P, Whitney O, Lints T, Rivas MV, Horita H, Patterson MA, White SA, Scharff C, Haesler S, Zhao S, Sakaguchi H, Hagiwara M, Shiraki T, ... ... Jarvis ED, et al. A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes. Proceedings of the National Academy of Sciences of the United States of America. 103: 15212-7. PMID 17018643 DOI: 10.1073/Pnas.0607098103 |
0.802 |
|
| 2006 |
JARVIS ED. Selection for and against vocal learning in birds and mammals Ornithological Science. 5: 5-14. DOI: 10.2326/osj.5.5 |
0.386 |
|
| 2006 |
Ferreira ARJ, Smulders TV, Sameshima K, Mello CV, Jarvis ED. Vocalizations and Associated Behaviors of the Sombre Hummingbird (Aphantochroa cirrhochloris) and the Rufous-Breasted Hermit (Glaucis hirsutus) (Vocalizaciones y Comportamientos Asociados de Aphantochroa cirrhochloris y Glaucis hirsutus) The Auk. 123: 1129-1148. DOI: 10.2307/25150225 |
0.668 |
|
| 2006 |
Ferreira ARJ, Smulders TV, Sameshima K, Mello CV, Jarvis ED. Vocalizations and associated behaviors of the sombre hummingbird (Aphantochroa cirrhochloris) and the rufous-breasted hermit (Glaucis hirsutus) Auk. 123: 1129-1148. DOI: 10.1642/0004-8038(2006)123[1129:VAABOT]2.0.CO;2 |
0.642 |
|
| 2005 |
Burmeister SS, Jarvis ED, Fernald RD. Rapid behavioral and genomic responses to social opportunity. Plos Biology. 3: e363. PMID 16216088 DOI: 10.1371/journal.pbio.0030363 |
0.376 |
|
| 2005 |
Mouritsen H, Feenders G, Liedvogel M, Wada K, Jarvis ED. Night-vision brain area in migratory songbirds. Proceedings of the National Academy of Sciences of the United States of America. 102: 8339-44. PMID 15928090 DOI: 10.1073/Pnas.0409575102 |
0.783 |
|
| 2005 |
Jarvis ED, Güntürkün O, Bruce L, Csillag A, Karten H, Kuenzel W, Medina L, Paxinos G, Perkel DJ, Shimizu T, Striedter G, Wild JM, Ball GF, Dugas-Ford J, Durand SE, et al. Avian brains and a new understanding of vertebrate brain evolution. Nature Reviews. Neuroscience. 6: 151-9. PMID 15685220 DOI: 10.1038/Nrn1606 |
0.786 |
|
| 2004 |
Reiner A, Perkel DJ, Bruce LL, Butler AB, Csillag A, Kuenzel W, Medina L, Paxinos G, Shimizu T, Striedter G, Wild M, Ball GF, Durand S, Gütürkün O, Lee DW, ... ... Jarvis ED, et al. The Avian Brain Nomenclature Forum: Terminology for a New Century in Comparative Neuroanatomy. The Journal of Comparative Neurology. 473: E1-E6. PMID 19626136 DOI: 10.1002/Cne.20119 |
0.793 |
|
| 2004 |
Jarvis ED. Learned birdsong and the neurobiology of human language. Annals of the New York Academy of Sciences. 1016: 749-77. PMID 15313804 DOI: 10.1196/annals.1298.038 |
0.404 |
|
| 2004 |
Reiner A, Perkel DJ, Mello CV, Jarvis ED. Songbirds and the revised avian brain nomenclature. Annals of the New York Academy of Sciences. 1016: 77-108. PMID 15313771 DOI: 10.1196/annals.1298.013 |
0.569 |
|
| 2004 |
Yu J, Smith VA, Wang PP, Hartemink AJ, Jarvis ED. Advances to Bayesian network inference for generating causal networks from observational biological data. Bioinformatics (Oxford, England). 20: 3594-603. PMID 15284094 DOI: 10.1093/Bioinformatics/Bth448 |
0.487 |
|
| 2004 |
Wada K, Sakaguchi H, Jarvis ED, Hagiwara M. Differential expression of glutamate receptors in avian neural pathways for learned vocalization. The Journal of Comparative Neurology. 476: 44-64. PMID 15236466 DOI: 10.1002/cne.20201 |
0.69 |
|
| 2004 |
Reiner A, Perkel DJ, Bruce LL, Butler AB, Csillag A, Kuenzel W, Medina L, Paxinos G, Shimizu T, Striedter G, Wild M, Ball GF, Durand S, Güntürkün O, Lee DW, ... ... Jarvis ED, et al. Revised nomenclature for avian telencephalon and some related brainstem nuclei. The Journal of Comparative Neurology. 473: 377-414. PMID 15116397 DOI: 10.1002/Cne.20118 |
0.794 |
|
| 2004 |
Haesler S, Wada K, Nshdejan A, Morrisey EE, Lints T, Jarvis ED, Scharff C. FoxP2 expression in avian vocal learners and non-learners. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 24: 3164-75. PMID 15056696 DOI: 10.1523/Jneurosci.4369-03.2004 |
0.761 |
|
| 2003 |
Gustincich S, Batalov S, Beisel KW, Bono H, Carninci P, Fletcher CF, Grimmond S, Hirokawa N, Jarvis ED, Jegla T, Kawasawa Y, LeMieux J, Miki H, Raviola E, Teasdale RD, et al. Analysis of the mouse transcriptome for genes involved in the function of the nervous system. Genome Research. 13: 1395-401. PMID 12819138 DOI: 10.1101/Gr.1135303 |
0.383 |
|
| 2003 |
Smith VA, Jarvis ED, Hartemink AJ. Influence of network topology and data collection on network inference. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 164-75. PMID 12603026 |
0.438 |
|
| 2002 |
Ribeiro S, Mello CV, Velho T, Gardner TJ, Jarvis ED, Pavlides C. Induction of hippocampal long-term potentiation during waking leads to increased extrahippocampal zif-268 expression during ensuing rapid-eye-movement sleep. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 22: 10914-23. PMID 12486186 DOI: 10.1523/Jneurosci.22-24-10914.2002 |
0.653 |
|
| 2002 |
Jarvis ED, Smith VA, Wada K, Rivas MV, McElroy M, Smulders TV, Carninci P, Hayashizaki Y, Dietrich F, Wu X, McConnell P, Yu J, Wang PP, Hartemink AJ, Lin S. A framework for integrating the songbird brain. Journal of Comparative Physiology. a, Neuroethology, Sensory, Neural, and Behavioral Physiology. 188: 961-80. PMID 12471494 DOI: 10.1007/S00359-002-0358-Y |
0.799 |
|
| 2002 |
Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, ... ... Jarvis ED, et al. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 420: 563-73. PMID 12466851 DOI: 10.1038/Nature01266 |
0.328 |
|
| 2002 |
Smith VA, Jarvis ED, Hartemink AJ. Evaluating functional network inference using simulations of complex biological systems. Bioinformatics (Oxford, England). 18: S216-24. PMID 12169550 |
0.421 |
|
| 2000 |
Krebs CJ, Jarvis ED, Chan J, Lydon JP, Ogawa S, Pfaff DW. A membrane-associated progesterone-binding protein, 25-Dx, is regulated by progesterone in brain regions involved in female reproductive behaviors. Proceedings of the National Academy of Sciences of the United States of America. 97: 12816-21. PMID 11070092 DOI: 10.1073/pnas.97.23.12816 |
0.312 |
|
| 2000 |
Denisenko-Nehrbass NI, Jarvis E, Scharff C, Nottebohm F, Mello CV. Site-specific retinoic acid production in the brain of adult songbirds. Neuron. 27: 359-70. PMID 10985355 DOI: 10.1016/S0896-6273(00)00043-X |
0.807 |
|
| 2000 |
Jarvis ED, Ribeiro S, da Silva ML, Ventura D, Vielliard J, Mello CV. Behaviourally driven gene expression reveals song nuclei in hummingbird brain. Nature. 406: 628-32. PMID 10949303 DOI: 10.1038/35020570 |
0.695 |
|
| 2000 |
Li XC, Jarvis ED, Alvarez-Borda B, Lim DA, Nottebohm F. A relationship between behavior, neurotrophin expression, and new neuron survival. Proceedings of the National Academy of Sciences of the United States of America. 97: 8584-9. PMID 10890902 DOI: 10.1073/Pnas.140222497 |
0.771 |
|
| 2000 |
Jarvis ED, Mello CV. Molecular mapping of brain areas involved in parrot vocal communication. The Journal of Comparative Neurology. 419: 1-31. PMID 10717637 DOI: 10.1002/(SICI)1096-9861(20000327)419:1<1::AID-CNE1>3.0.CO;2-M |
0.612 |
|
| 1999 |
Krebs CJ, Jarvis ED, Pfaff DW. The 70-kDa heat shock cognate protein (Hsc73) gene is enhanced by ovarian hormones in the ventromedial hypothalamus. Proceedings of the National Academy of Sciences of the United States of America. 96: 1686-91. PMID 9990085 DOI: 10.1073/pnas.96.4.1686 |
0.327 |
|
| 1999 |
Mello IV, Jarvis ED. Chapter 2.2.2 Applying differential display to brain research Techniques in the Behavioral and Neural Sciences. 13: 200-211. DOI: 10.1016/S0921-0709(99)80019-4 |
0.355 |
|
| 1998 |
Jarvis ED, Scharff C, Grossman MR, Ramos JA, Nottebohm F. For whom the bird sings: context-dependent gene expression. Neuron. 21: 775-88. PMID 9808464 DOI: 10.1016/S0896-6273(00)80594-2 |
0.784 |
|
| 1997 |
Holzenberger M, Jarvis ED, Chong C, Grossman M, Nottebohm F, Scharff C. Selective expression of insulin-like growth factor II in the songbird brain. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 17: 6974-87. PMID 9278533 DOI: 10.1523/Jneurosci.17-18-06974.1997 |
0.763 |
|
| 1997 |
Mello CV, Jarvis ED, Denisenko N, Rivas M. Isolation of song-regulated genes in the brain of songbirds. Methods in Molecular Biology (Clifton, N.J.). 85: 205-17. PMID 9276326 DOI: 10.1385/0-89603-489-5:205 |
0.559 |
|
| 1997 |
Jarvis ED, Schwabl H, Ribeiro S, Mello CV. Brain gene regulation by territorial singing behavior in freely ranging songbirds. Neuroreport. 8: 2073-7. PMID 9223104 DOI: 10.1097/00001756-199705260-00052 |
0.669 |
|
| 1997 |
Jarvis ED, Nottebohm F. Motor-driven gene expression. Proceedings of the National Academy of Sciences of the United States of America. 94: 4097-102. PMID 9108111 DOI: 10.1073/pnas.94.8.4097 |
0.719 |
|
| 1995 |
Jarvis ED, Mello CV, Nottebohm F. Associative learning and stimulus novelty influence the song-induced expression of an immediate early gene in the canary forebrain. Learning & Memory (Cold Spring Harbor, N.Y.). 2: 62-80. PMID 10467567 DOI: 10.1101/Lm.2.2.62 |
0.761 |
|
| 1995 |
Chew SJ, Mello C, Nottebohm F, Jarvis E, Vicario DS. Decrements in auditory responses to a repeated conspecific song are long-lasting and require two periods of protein synthesis in the songbird forebrain. Proceedings of the National Academy of Sciences of the United States of America. 92: 3406-10. PMID 7724575 DOI: 10.1073/Pnas.92.8.3406 |
0.778 |
|
| 1990 |
Rivas MV, Jarvis ED, Rudner R. The structure of the trpE, trpD and 5' trpC genes of Bacillus pumilus. Gene. 87: 71-8. PMID 2110100 DOI: 10.1016/0378-1119(90)90497-F |
0.339 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2015 |
Chabout J, Sarkar A, Dunson DB, Jarvis ED. Male mice song syntax depends on social contexts and influences female preferences. Frontiers in Behavioral Neuroscience. 9: 76. PMID 25883559 DOI: 10.3389/Fnbeh.2015.00076 |
0.299 |
|
| 2023 |
Huang Z, Xu L, Cai C, Zhou Y, Liu J, Xu Z, Zhu Z, Kang W, Cen W, Pei S, Chen D, Shi C, Wu X, Huang Y, Xu C, ... ... Jarvis ED, et al. Three amphioxus reference genomes reveal gene and chromosome evolution of chordates. Proceedings of the National Academy of Sciences of the United States of America. 120: e2201504120. PMID 36867684 DOI: 10.1073/pnas.2201504120 |
0.298 |
|
| 2023 |
Squires TE, Rödin-Mörch P, Formenti G, Tracey A, Abueg L, Brajuka N, Jarvis E, Halapi EC, Melsted P, Höglund J, Magnússon KP. A Chromosome-Level Genome Assembly for the Rock Ptarmigan (Lagopus muta). G3 (Bethesda, Md.). PMID 37141262 DOI: 10.1093/g3journal/jkad099 |
0.295 |
|
| 2015 |
Brusatte SL, O'Connor JK, Jarvis ED. The Origin and Diversification of Birds. Current Biology : Cb. 25: R888-98. PMID 26439352 DOI: 10.1016/J.Cub.2015.08.003 |
0.292 |
|
| 1997 |
Rivas MV, Jarvis ED, Morisaki S, Carbonaro H, Gottlieb AB, Krueger JG. Identification of aberrantly regulated genes in diseased skin using the cDNA differential display technique. The Journal of Investigative Dermatology. 108: 188-94. PMID 9008232 DOI: 10.1111/1523-1747.Ep12334217 |
0.291 |
|
| 2017 |
Jarvis E. 341. Dissecting the Molecular Mechanisms of Vocal Learning and Spoken Language Biological Psychiatry. 81: S140. DOI: 10.1016/j.biopsych.2017.02.358 |
0.291 |
|
| 2015 |
Cracraft J, Houde P, Ho SY, Mindell DP, Fjeldså J, Lindow B, Edwards SV, Rahbek C, Mirarab S, Warnow T, Gilbert MT, Zhang G, Braun EL, Jarvis ED. Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds". Science (New York, N.Y.). 349: 1460. PMID 26404820 DOI: 10.1126/Science.Aab1578 |
0.291 |
|
| 1986 |
LaFauci G, Widom RL, Eisner RL, Jarvis ED, Rudner R. Mapping of rRNA genes with integrable plasmids in Bacillus subtilis. Journal of Bacteriology. 165: 204-14. PMID 3079748 DOI: 10.1128/Jb.165.1.204-214.1986 |
0.288 |
|
| 2018 |
Sarkar A, Chabout J, Macopson JJ, Jarvis ED, Dunson DB. Bayesian Semiparametric Mixed Effects Markov Models With Application to Vocalization Syntax Journal of the American Statistical Association. 113: 1515-1527. DOI: 10.1080/01621459.2018.1423986 |
0.285 |
|
| 2021 |
Zhou Y, Shearwin-Whyatt L, Li J, Song Z, Hayakawa T, Stevens D, Fenelon JC, Peel E, Cheng Y, Pajpach F, Bradley N, Suzuki H, Nikaido M, Damas J, Daish T, ... ... Jarvis ED, et al. Platypus and echidna genomes reveal mammalian biology and evolution. Nature. PMID 33408411 DOI: 10.1038/s41586-020-03039-0 |
0.284 |
|
| 1993 |
Rudner R, Chevrestt A, Buchholz SR, Studamire B, White AM, Jarvis ED. Two tRNA gene clusters associated with rRNA operons rrnD and rrnE in Bacillus subtilis. Journal of Bacteriology. 175: 503-9. PMID 8419296 DOI: 10.1128/Jb.175.2.503-509.1993 |
0.282 |
|
| 2023 |
Bentley BP, Carrasco-Valenzuela T, Ramos EKS, Pawar H, Souza Arantes L, Alexander A, Banerjee SM, Masterson P, Kuhlwilm M, Pippel M, Mountcastle J, Haase B, Uliano-Silva M, Formenti G, Howe K, ... ... Jarvis ED, et al. Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences of the United States of America. 120: e2201076120. PMID 36749728 DOI: 10.1073/pnas.2201076120 |
0.281 |
|
| 2006 |
Sasaki A, Sotnikova TD, Gainetdinov RR, Jarvis ED. Social context-dependent singing-regulated dopamine. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 9010-4. PMID 16943558 DOI: 10.1523/JNEUROSCI.1335-06.2006 |
0.281 |
|
| 2022 |
Stephan T, Burgess SM, Cheng H, Danko CG, Gill CA, Jarvis ED, Koepfli KP, Koltes JE, Lyons E, Ronald P, Ryder OA, Schriml LM, Soltis P, VandeWoude S, Zhou H, et al. Darwinian genomics and diversity in the tree of life. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35042807 DOI: 10.1073/pnas.2115644119 |
0.278 |
|
| 2011 |
Roulhac PL, Ward JM, Thompson JW, Soderblom EJ, Silva M, Moseley MA, Jarvis ED. Microproteomics: quantitative proteomic profiling of small numbers of laser-captured cells. Cold Spring Harbor Protocols. 2011: pdb.prot5573. PMID 21285273 DOI: 10.1101/Pdb.Prot5573 |
0.277 |
|
| 2023 |
Timoshevskaya N, Eşkut KI, Timoshevskiy VA, Robb SMC, Holt C, Hess JE, Parker HJ, Baker CF, Miller AK, Saraceno C, Yandell M, Krumlauf R, Narum SR, Lampman RT, Gemmell NJ, ... ... Jarvis ED, et al. An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes. Cell Reports. 42: 112263. PMID 36930644 DOI: 10.1016/j.celrep.2023.112263 |
0.276 |
|
| 2017 |
Chabout J, Jones-Macopson J, Jarvis ED. Eliciting and Analyzing Male Mouse Ultrasonic Vocalization (USV) Songs. Journal of Visualized Experiments : Jove. PMID 28518074 DOI: 10.3791/54137 |
0.276 |
|
| 2014 |
Greenwold MJ, Bao W, Jarvis ED, Hu H, Li C, Gilbert MT, Zhang G, Sawyer RH. Dynamic evolution of the alpha (α) and beta (β) keratins has accompanied integument diversification and the adaptation of birds into novel lifestyles. Bmc Evolutionary Biology. 14: 249. PMID 25496280 DOI: 10.1186/S12862-014-0249-1 |
0.275 |
|
| 2014 |
Dai R, Rossello R, Chen CC, Kessler J, Davison I, Hochgeschwender U, Jarvis ED. Maintenance and neuronal differentiation of chicken induced pluripotent stem-like cells. Stem Cells International. 2014: 182737. PMID 25610469 DOI: 10.1155/2014/182737 |
0.273 |
|
| 2021 |
Hansen T, Fjelldal PG, Lien S, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan J, Fedrigo O, Mountcastle J, Jarvis E, McCarthy SA, Chow W, Howe K, et al. The genome sequence of the brown trout, Linnaeus 1758. Wellcome Open Research. 6: 108. PMID 34632087 DOI: 10.12688/wellcomeopenres.16838.1 |
0.273 |
|
| 2023 |
Skorupski J, Brandes F, Seebass C, Festl W, Śmietana P, Balacco J, Jain N, Tilley T, Abueg L, Wood J, Sims Y, Formenti G, Fedrigo O, Jarvis ED. Prioritizing Endangered Species in Genome Sequencing: Conservation Genomics in Action with the First Platinum-Standard Reference-Quality Genome of the Critically Endangered European Mink L., 1761. International Journal of Molecular Sciences. 24. PMID 37834264 DOI: 10.3390/ijms241914816 |
0.272 |
|
| 2022 |
Davenport MH, Jarvis ED. Birdsong neuroscience and the evolutionary substrates of learned vocalization. Trends in Neurosciences. 46: 97-99. PMID 36517289 DOI: 10.1016/j.tins.2022.11.005 |
0.269 |
|
| 2021 |
Walløe S, Chakraborty M, Balsby TJS, Jarvis ED, Dabelsteen T, Pakkenberg B. A Relationship between the Characteristics of the Oval Nucleus of the Mesopallium and Parrot Vocal Response to Playback. Brain, Behavior and Evolution. 96: 37-48. PMID 34284396 DOI: 10.1159/000517489 |
0.268 |
|
| 2022 |
Ko BJ, Lee C, Kim J, Rhie A, Yoo DA, Howe K, Wood J, Cho S, Brown S, Formenti G, Jarvis ED, Kim H. Widespread false gene gains caused by duplication errors in genome assemblies. Genome Biology. 23: 205. PMID 36167596 DOI: 10.1186/s13059-022-02764-1 |
0.266 |
|
| 2020 |
Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q, Xie D, Feng S, Stiller J, Genereux D, Johnson J, Marinescu VD, Alföldi J, Harris RS, ... ... Jarvis ED, et al. Progressive Cactus is a multiple-genome aligner for the thousand-genome era. Nature. 587: 246-251. PMID 33177663 DOI: 10.1038/s41586-020-2871-y |
0.265 |
|
| 2019 |
Khan I, Maldonado E, Silva L, Almeida D, Johnson WE, O’Brien SJ, Zhang G, Jarvis ED, Gilbert MTP, Antunes A. The Vertebrate TLR Supergene Family Evolved Dynamically by Gene Gain/Loss and Positive Selection Revealing a Host–Pathogen Arms Race in Birds Diversity. 11: 131. DOI: 10.3390/D11080131 |
0.265 |
|
| 1988 |
Widom RL, Jarvis ED, LaFauci G, Rudner R. Instability of rRNA operons in Bacillus subtilis. Journal of Bacteriology. 170: 605-10. PMID 2828315 DOI: 10.1128/Jb.170.2.605-610.1988 |
0.263 |
|
| 2010 |
Robinson GE, Banks JA, Padilla DK, Burggren WW, Cohen CS, Delwiche CF, Funk V, Hoekstra HE, Jarvis ED, Johnson L, Martindale MQ, Rio CMD, Medina M, Salt DE, Sinha S, et al. Empowering 21st century biology Bioscience. 60: 923-930. DOI: 10.1525/Bio.2010.60.11.8 |
0.263 |
|
| 2023 |
Secomandi S, Gallo GR, Sozzoni M, Iannucci A, Galati E, Abueg L, Balacco J, Caprioli M, Chow W, Ciofi C, Collins J, Fedrigo O, Ferretti L, Fungtammasan A, Haase B, ... ... Jarvis ED, et al. A chromosome-level reference genome and pangenome for barn swallow population genomics. Cell Reports. 42: 111992. PMID 36662619 DOI: 10.1016/j.celrep.2023.111992 |
0.263 |
|
| 2023 |
Lee YH, Abueg L, Kim JK, Kim YW, Fedrigo O, Balacco J, Formenti G, Howe K, Tracey A, Wood J, Thibaud-Nissen F, Nam BH, No ES, Kim HR, Lee C, ... Jarvis ED, et al. Chromosome-level genome assembly of chub mackerel (Scomber japonicus) from the Indo-Pacific Ocean. Scientific Data. 10: 880. PMID 38066002 DOI: 10.1038/s41597-023-02782-z |
0.262 |
|
| 2014 |
Petkov CI, Jarvis ED. The basal ganglia within a cognitive system in birds and mammals. The Behavioral and Brain Sciences. 37: 568-9; discussion 57. PMID 25514958 DOI: 10.1017/S0140525X13004160 |
0.261 |
|
| 2022 |
Nurk S, Koren S, Rhie A, Rautiainen M, Bzikadze AV, Mikheenko A, Vollger MR, Altemose N, Uralsky L, Gershman A, Aganezov S, Hoyt SJ, Diekhans M, Logsdon GA, Alonge M, ... ... Jarvis ED, et al. The complete sequence of a human genome. Science (New York, N.Y.). 376: 44-53. PMID 35357919 DOI: 10.1126/science.abj6987 |
0.258 |
|
| 2015 |
Jarvis ED. Surviving as an underrepresented minority scientist in a majority environment. Molecular Biology of the Cell. 26: 3692-6. PMID 26515973 DOI: 10.1091/mbc.E15-06-0451 |
0.257 |
|
| 2023 |
Joglekar A, Hu W, Zhang B, Narykov O, Diekhans M, Balacco J, Ndhlovu LC, Milner TA, Fedrigo O, Jarvis ED, Sheynkman G, Korkin D, Ross ME, Tilgner HU. Single-cell long-read mRNA isoform regulation is pervasive across mammalian brain regions, cell types, and development. Biorxiv : the Preprint Server For Biology. PMID 37066387 DOI: 10.1101/2023.04.02.535281 |
0.257 |
|
| 2016 |
Machado JP, Johnson WE, Gilbert MT, Zhang G, Jarvis ED, O'Brien SJ, Antunes A. Bone-associated gene evolution and the origin of flight in birds. Bmc Genomics. 17: 371. PMID 27193938 DOI: 10.1186/S12864-016-2681-7 |
0.253 |
|
| 2022 |
Wang T, Antonacci-Fulton L, Howe K, Lawson HA, Lucas JK, Phillippy AM, Popejoy AB, Asri M, Carson C, Chaisson MJP, Chang X, Cook-Deegan R, Felsenfeld AL, Fulton RS, Garrison EP, ... ... Jarvis ED, et al. The Human Pangenome Project: a global resource to map genomic diversity. Nature. 604: 437-446. PMID 35444317 DOI: 10.1038/s41586-022-04601-8 |
0.252 |
|
| 2022 |
Jarvis ED, Formenti G, Rhie A, Guarracino A, Yang C, Wood J, Tracey A, Thibaud-Nissen F, Vollger MR, Porubsky D, Cheng H, Asri M, Logsdon GA, Carnevali P, Chaisson MJP, et al. Semi-automated assembly of high-quality diploid human reference genomes. Nature. PMID 36261518 DOI: 10.1038/s41586-022-05325-5 |
0.251 |
|
| 2023 |
Larivière D, Abueg L, Brajuka N, Gallardo-Alba C, Grüning B, Ko BJ, Ostrovsky A, Palmada-Flores M, Pickett BD, Rabbani K, Balacco JR, Chaisson M, Cheng H, Collins J, Denisova A, ... ... Jarvis ED, et al. Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy. Biorxiv : the Preprint Server For Biology. PMID 37425881 DOI: 10.1101/2023.06.28.546576 |
0.249 |
|
| 1994 |
Rudner R, Studamire B, Jarvis ED. Determinations of restriction fragment length polymorphism in bacteria using ribosomal RNA genes. Methods in Enzymology. 235: 184-96. PMID 7520118 DOI: 10.1016/0076-6879(94)35140-6 |
0.248 |
|
| 2023 |
Sozzoni M, Ferrer Obiol J, Formenti G, Tigano A, Paris JR, Balacco JR, Jain N, Tilley T, Collins J, Sims Y, Wood J, Benowitz-Fredericks ZM, Field KA, Seyoum E, Gatt MC, ... ... Jarvis ED, et al. A Chromosome-Level Reference Genome for the Black-Legged Kittiwake (Rissa tridactyla), a Declining Circumpolar Seabird. Genome Biology and Evolution. 15. PMID 37590950 DOI: 10.1093/gbe/evad153 |
0.245 |
|
| 2020 |
Morin PA, Archer FI, Avila CD, Balacco JR, Bukhman YV, Chow W, Fedrigo O, Formenti G, Fronczek JA, Fungtammasan A, Gulland FMD, Haase B, Heide-Jorgensen MP, Houck ML, Howe K, ... ... Jarvis ED, et al. Reference genome and demographic history of the most endangered marine mammal, the vaquita. Molecular Ecology Resources. PMID 33089966 DOI: 10.1111/1755-0998.13284 |
0.243 |
|
| 2021 |
Liu J, Wang Z, Li J, Xu L, Liu J, Feng S, Guo C, Chen S, Ren Z, Rao J, Wei K, Chen Y, Jarvis E, Zhang G, Zhou Q. A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes. Genome Research. PMID 33408157 DOI: 10.1101/gr.271569.120 |
0.237 |
|
| 2023 |
Rice ES, Alberdi A, Alfieri J, Athrey G, Balacco JR, Bardou P, Blackmon H, Charles M, Cheng HH, Fedrigo O, Fiddaman SR, Formenti G, Frantz LAF, Gilbert MTP, Hearn CJ, ... Jarvis ED, et al. A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants. Bmc Biology. 21: 267. PMID 37993882 DOI: 10.1186/s12915-023-01758-0 |
0.236 |
|
| 2022 |
Paez S, Kraus RHS, Shapiro B, Gilbert MTP, Jarvis ED, Al-Ajli FO, Ceballos G, Crawford AJ, Fedrigo O, Johnson RN, Johnson WE, Marques-Bonet T, Morin PA, Mueller RC, Ryder OA, et al. Reference genomes for conservation. Science (New York, N.Y.). 377: 364-366. PMID 35862547 DOI: 10.1126/science.abm8127 |
0.236 |
|
| 2022 |
Blaxter M, Archibald JM, Childers AK, Coddington JA, Crandall KA, Di Palma F, Durbin R, Edwards SV, Graves JAM, Hackett KJ, Hall N, Jarvis ED, Johnson RN, Karlsson EK, Kress WJ, et al. Why sequence all eukaryotes? Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35042801 DOI: 10.1073/pnas.2115636118 |
0.235 |
|
| 2015 |
Zhang G, Rahbek C, Graves GR, Lei F, Jarvis ED, Gilbert MT. Genomics: Bird sequencing project takes off. Nature. 522: 34. PMID 26040883 DOI: 10.1038/522034D |
0.234 |
|
| 2023 |
Gabrielli M, Benazzo A, Biello R, Ancona L, Fuselli S, Iannucci A, Balacco J, Mountcastle J, Tracey A, Ficetola GF, Salvi D, Sollitto M, Fedrigo O, Formenti G, Jarvis ED, et al. A high-quality reference genome for the critically endangered Aeolian wall lizard, Podarcis raffonei. The Journal of Heredity. PMID 36866448 DOI: 10.1093/jhered/esad014 |
0.234 |
|
| 2023 |
Audet JN, Couture M, Jarvis ED. Songbird species that display more-complex vocal learning are better problem-solvers and have larger brains. Science (New York, N.Y.). 381: 1170-1175. PMID 37708288 DOI: 10.1126/science.adh3428 |
0.233 |
|
| 2010 |
Zapka M, Heyers D, Liedvogel M, Jarvis ED, Mouritsen H. Night-time neuronal activation of Cluster N in a day- and night-migrating songbird. The European Journal of Neuroscience. 32: 619-24. PMID 20618826 DOI: 10.1111/j.1460-9568.2010.07311.x |
0.233 |
|
| 2022 |
Hardwick SA, Hu W, Joglekar A, Fan L, Collier PG, Foord C, Balacco J, Lanjewar S, Sampson MM, Koopmans F, Prjibelski AD, Mikheenko A, Belchikov N, Jarroux J, Lucas AB, ... ... Jarvis E, et al. Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue. Nature Biotechnology. PMID 35256815 DOI: 10.1038/s41587-022-01231-3 |
0.231 |
|
| 1998 |
Rudner R, Martsinkevich O, Leung W, Jarvis ED. Classification and genetic characterization of pattern-forming Bacilli. Molecular Microbiology. 27: 687-703. PMID 9515696 DOI: 10.1046/j.1365-2958.1998.00717.x |
0.23 |
|
| 2022 |
Palmada-Flores M, Orkin JD, Haase B, Mountcastle J, Bertelsen MF, Fedrigo O, Kuderna LFK, Jarvis ED, Marques-Bonet T. A high-quality, long-read genome assembly of the endangered ring-tailed lemur (Lemur catta). Gigascience. 11. PMID 35365833 DOI: 10.1093/gigascience/giac026 |
0.229 |
|
| 2021 |
Joglekar A, Prjibelski A, Mahfouz A, Collier P, Lin S, Schlusche AK, Marrocco J, Williams SR, Haase B, Hayes A, Chew JG, Weisenfeld NI, Wong MY, Stein AN, Hardwick SA, ... ... Jarvis ED, et al. A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain. Nature Communications. 12: 463. PMID 33469025 DOI: 10.1038/s41467-020-20343-5 |
0.227 |
|
| 2022 |
Sahajpal NS, Jill Lai CY, Hastie A, Mondal AK, Dehkordi SR, van der Made CI, Fedrigo O, Al-Ajli F, Jalnapurkar S, Byrska-Bishop M, Kanagal-Shamanna R, Levy B, Schieck M, Illig T, Bacanu SA, ... ... Jarvis ED, et al. Optical genome mapping identifies rare structural variations as predisposition factors associated with severe COVID-19. Iscience. 103760. PMID 35036860 DOI: 10.1016/j.isci.2022.103760 |
0.225 |
|
| 2015 |
Jarvis ED. Listening in. Elife. 4. PMID 26486860 DOI: 10.7554/eLife.11665 |
0.221 |
|
| 2020 |
Mead D, Fingland K, Cripps R, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Dolucan J, Dudchenko O, Omer AD, Weisz D, Lieberman Aiden E, Fedrigo O, ... ... Jarvis E, et al. The genome sequence of the Eurasian red squirrel, Sciurus vulgaris Linnaeus 1758 Wellcome Open Research. 5: 18. DOI: 10.12688/wellcomeopenres.15679.1 |
0.218 |
|
| 2020 |
Mead D, Fingland K, Cripps R, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Dolucan J, Dudchenko O, Omer AD, Weisz D, Lieberman Aiden E, Fedrigo O, ... ... Jarvis E, et al. The genome sequence of the Eurasian red squirrel, Linnaeus 1758. Wellcome Open Research. 5: 18. PMID 32587897 DOI: 10.12688/wellcomeopenres.15679.1 |
0.217 |
|
| 1999 |
Rudner R, Jarvis ED. Response to Matsuyama and Matsushita's MicroCorrespondence regarding our paper 'Classification and genetic characterization of pattern-forming bacilli' mol microbiol (1998) 27: 687-703 Response to Matsuyama and Matsushita's MicroCorrespondence regarding our paper 'Classification and genetic characterization of pattern-forming bacilli' Mol Microbiol (1998) 27: 687-703 [4] Molecular Microbiology. 31: 1279-1281. DOI: 10.1046/j.1365-2958.1999.01259.x |
0.213 |
|
| 2010 |
Jarvis ED. Bird Brain: Evolution Encyclopedia of Neuroscience. 209-215. DOI: 10.1016/B978-008045046-9.00934-7 |
0.213 |
|
| 2023 |
Liao WW, Asri M, Ebler J, Doerr D, Haukness M, Hickey G, Lu S, Lucas JK, Monlong J, Abel HJ, Buonaiuto S, Chang XH, Cheng H, Chu J, Colonna V, ... ... Jarvis ED, et al. A draft human pangenome reference. Nature. 617: 312-324. PMID 37165242 DOI: 10.1038/s41586-023-05896-x |
0.209 |
|
| 2022 |
Formenti G, Abueg L, Brajuka A, Brajuka N, Gallardo-Alba C, Giani A, Fedrigo O, Jarvis ED. Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs. Bioinformatics (Oxford, England). PMID 35799367 DOI: 10.1093/bioinformatics/btac460 |
0.205 |
|
| 2021 |
Formenti G, Rhie A, Balacco J, Haase B, Mountcastle J, Fedrigo O, Brown S, Capodiferro MR, Al-Ajli FO, Ambrosini R, Houde P, Koren S, Oliver K, Smith M, Skelton J, ... ... Jarvis ED, et al. Complete vertebrate mitogenomes reveal widespread repeats and gene duplications. Genome Biology. 22: 120. PMID 33910595 DOI: 10.1186/s13059-021-02336-9 |
0.203 |
|
| 2021 |
Peart CR, Williams C, Pophaly SD, Neely BA, Gulland FMD, Adams DJ, Ng BL, Cheng W, Goebel ME, Fedrigo O, Haase B, Mountcastle J, Fungtammasan A, Formenti G, Collins J, ... ... Jarvis ED, et al. Hi-C scaffolded short- and long-read genome assemblies of the California sea lion are broadly consistent for syntenic inference across 45 million years of evolution. Molecular Ecology Resources. PMID 34097816 DOI: 10.1111/1755-0998.13443 |
0.201 |
|
| 2015 |
Ribeiro ÂM, Zepeda-Mendoza ML, Bertelsen MF, Kristensen AT, Jarvis ED, Gilbert MTP, Da Fonseca RR. A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis Bmc Evolutionary Biology. 15. DOI: 10.1186/s12862-015-0409-y |
0.197 |
|
| 2011 |
Jarvis E. Insight into Brain Development from Animal Vocalization Studies Ilar Journal. 52: 524-530. DOI: 10.1093/ILAR.52.SUPPL_1.524 |
0.197 |
|
| 2021 |
Melin AD, Orkin JD, Janiak MC, Valenzuela A, Kuderna L, Marrone F, Ramangason H, Horvath JE, Roos C, Kitchener AC, Khor CC, Lim WK, Lee JGH, Tan P, Umapathy G, ... ... Jarvis ED, et al. Variation in predicted COVID-19 risk among lemurs and lorises. Biorxiv : the Preprint Server For Biology. PMID 33564767 DOI: 10.1101/2021.02.03.429540 |
0.19 |
|
| 2021 |
Melin AD, Orkin JD, Janiak MC, Valenzuela A, Kuderna L, Marrone F, Ramangason H, Horvath JE, Roos C, Kitchener AC, Khor CC, Lim WK, Lee JGH, Tan P, Umapathy G, ... ... Jarvis ED, et al. Variation in predicted COVID-19 risk among lemurs and lorises. American Journal of Primatology. e23255. PMID 33792947 DOI: 10.1002/ajp.23255 |
0.188 |
|
| 2022 |
Dahn HA, Mountcastle J, Balacco J, Winkler S, Bista I, Schmitt AD, Pettersson OV, Formenti G, Oliver K, Smith M, Tan W, Kraus A, Mac S, Komoroske LM, Lama T, ... ... Jarvis ED, et al. Benchmarking ultra-high molecular weight DNA preservation methods for long-read and long-range sequencing. Gigascience. 11. PMID 35946988 DOI: 10.1093/gigascience/giac068 |
0.186 |
|
| 2022 |
Biegler MT, Fedrigo O, Collier P, Mountcastle J, Haase B, Tilgner HU, Jarvis ED. Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9. Scientific Reports. 12: 4369. PMID 35288582 DOI: 10.1038/s41598-022-07434-7 |
0.185 |
|
| 1988 |
Jarvis ED, Widom RL, LaFauci G, Setoguchi Y, Richter IR, Rudner R. Chromosomal organization of rRNA operons in Bacillus subtilis. Genetics. 120: 625-35. PMID 2465199 |
0.185 |
|
| 2022 |
Lawniczak MKN, Durbin R, Flicek P, Lindblad-Toh K, Wei X, Archibald JM, Baker WJ, Belov K, Blaxter ML, Marques Bonet T, Childers AK, Coddington JA, Crandall KA, Crawford AJ, Davey RP, ... ... Jarvis ED, et al. Standards recommendations for the Earth BioGenome Project. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35042802 DOI: 10.1073/pnas.2115639118 |
0.181 |
|
| 2010 |
Jarvis ED. The evolution of vocal learning systems in birds and humans Evolution of Nervous Systems. 2: 213-227. DOI: 10.1016/B0-12-370878-8/00136-1 |
0.179 |
|
| 2004 |
Jarvis ED. Brains and birdsong Nature's Music: the Science of Birdsong. 226-271. DOI: 10.1016/B978-012473070-0/50011-6 |
0.178 |
|
| 2021 |
Mueller RC, Ellström P, Howe K, Uliano-Silva M, Kuo RI, Miedzinska K, Warr A, Fedrigo O, Haase B, Mountcastle J, Chow W, Torrance J, Wood JMD, Järhult JD, Naguib MM, ... ... Jarvis ED, et al. A high-quality genome and comparison of short- versus long-read transcriptome of the palaearctic duck Aythya fuligula (tufted duck). Gigascience. 10. PMID 34927191 DOI: 10.1093/gigascience/giab081 |
0.173 |
|
| 2015 |
Chakraborty M, Walløe S, Nedergaard S, Fridel EE, Dabelsteen T, Pakkenberg B, Bertelsen MF, Dorrestein GM, Brauth SE, Durand SE, Jarvis ED. Core and shell song systems unique to the parrot brain Plos One. 10. DOI: 10.1371/journal.pone.0118496 |
0.173 |
|
| 2021 |
Li J, Zhang J, Liu J, Zhou Y, Cai C, Xu L, Dai X, Feng S, Guo C, Rao J, Wei K, Jarvis ED, Jiang Y, Zhou Z, Zhang G, et al. A new duck genome reveals conserved and convergently evolved chromosome architectures of birds and mammals. Gigascience. 10. PMID 33406261 DOI: 10.1093/gigascience/giaa142 |
0.172 |
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| 2021 |
Kronenberg ZN, Rhie A, Koren S, Concepcion GT, Peluso P, Munson KM, Porubsky D, Kuhn K, Mueller KA, Low WY, Hiendleder S, Fedrigo O, Liachko I, Hall RJ, Phillippy AM, ... ... Jarvis ED, et al. Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C. Nature Communications. 12: 1935. PMID 33911078 DOI: 10.1038/s41467-020-20536-y |
0.17 |
|
| 2023 |
Karawita AC, Cheng Y, Chew KY, Challagulla A, Kraus R, Mueller RC, Tong MZW, Hulme KD, Bielefeldt-Ohmann H, Steele LE, Wu M, Sng J, Noye E, Bruxner TJ, Au GG, ... ... Jarvis ED, et al. The swan genome and transcriptome, it is not all black and white. Genome Biology. 24: 13. PMID 36683094 DOI: 10.1186/s13059-022-02838-0 |
0.167 |
|
| 2022 |
Wu Y, Jarvis ED, Sarkar A. Bayesian semiparametric Markov renewal mixed models for vocalization syntax. Biostatistics (Oxford, England). PMID 36583955 DOI: 10.1093/biostatistics/kxac050 |
0.165 |
|
| 2022 |
Formenti G, Rhie A, Walenz BP, Thibaud-Nissen F, Shafin K, Koren S, Myers EW, Jarvis ED, Phillippy AM. Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation. Nature Methods. PMID 35361932 DOI: 10.1038/s41592-022-01445-y |
0.163 |
|
| 2022 |
Cheng H, Jarvis ED, Fedrigo O, Koepfli KP, Urban L, Gemmell NJ, Li H. Haplotype-resolved assembly of diploid genomes without parental data. Nature Biotechnology. PMID 35332338 DOI: 10.1038/s41587-022-01261-x |
0.161 |
|
| 2022 |
Ebenezer TE, Muigai AWT, Nouala S, Badaoui B, Blaxter M, Buddie AG, Jarvis ED, Korlach J, Kuja JO, Lewin HA, Majewska R, Mapholi N, Maslamoney S, Mbo'o-Tchouawou M, Osuji JO, et al. Africa: sequence 100,000 species to safeguard biodiversity. Nature. 603: 388-392. PMID 35292740 DOI: 10.1038/d41586-022-00712-4 |
0.153 |
|
| 1990 |
Rivas MV, Jarvis ED, Rudner R. The structure of the trpE, trpD and 5' trpC genes of Bacillus pumilus. Gene. 94: 141-3. PMID 2227447 DOI: 10.1016/0378-1119(90)90483-8 |
0.147 |
|
| 1990 |
Jarvis ED, Cheng S, Rudner R. Genetic structure and DNA sequences at junctions involved in the rearrangements of Bacillus subtilis strains carrying the trpE26 mutation. Genetics. 126: 785-97. PMID 1981762 |
0.137 |
|
| 2023 |
Smith J, Alfieri JM, Anthony N, Arensburger P, Athrey GN, Balacco J, Balic A, Bardou P, Barela P, Bigot Y, Blackmon H, Borodin PM, Carroll R, Casono MC, Charles M, ... ... Jarvis E, et al. Fourth Report on Chicken Genes and Chromosomes 2022. Cytogenetic and Genome Research. PMID 36716736 DOI: 10.1159/000529376 |
0.134 |
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| 2024 |
Baker DN, Abueg L, Escalona M, Farquharson KA, Lanyon JM, Le Duc D, Schöneberg T, Absolon D, Sims Y, Fedrigo O, Jarvis ED, Belov K, Hogg CJ, Shapiro B. A chromosome-level genome assembly for the dugong (Dugong dugon). The Journal of Heredity. PMID 38245832 DOI: 10.1093/jhered/esae003 |
0.12 |
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| 2022 |
Dussex N, Robertson BC, Dalén L, Jarvis ED. The kākāpō (Strigops habroptilus). Trends in Genetics : Tig. PMID 35370003 DOI: 10.1016/j.tig.2022.03.004 |
0.12 |
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| 2022 |
Toh H, Yang C, Formenti G, Raja K, Yan L, Tracey A, Chow W, Howe K, Bergeron LA, Zhang G, Haase B, Mountcastle J, Fedrigo O, Fogg J, Kirilenko B, ... ... Jarvis ED, et al. A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes. Bmc Biology. 20: 245. PMID 36344967 DOI: 10.1186/s12915-022-01427-8 |
0.11 |
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| 2023 |
Sendell-Price AT, Tulenko FJ, Pettersson M, Kang D, Montandon M, Winkler S, Kulb K, Naylor GP, Phillippy A, Fedrigo O, Mountcastle J, Balacco JR, Dutra A, Dale RE, Haase B, ... Jarvis ED, et al. Low mutation rate in epaulette sharks is consistent with a slow rate of evolution in sharks. Nature Communications. 14: 6628. PMID 37857613 DOI: 10.1038/s41467-023-42238-x |
0.105 |
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| 2010 |
Jarvis ED. Bird song systems: Evolution Encyclopedia of Neuroscience. 217-225. DOI: 10.1016/B978-008045046-9.00935-9 |
0.1 |
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| 2021 |
Jarvis ED. At the beginning of speciation. Science (New York, N.Y.). 371: 1312. PMID 33766875 DOI: 10.1126/science.abg5454 |
0.097 |
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| 2022 |
Lewin HA, Richards S, Lieberman Aiden E, Allende ML, Archibald JM, Bálint M, Barker KB, Baumgartner B, Belov K, Bertorelle G, Blaxter ML, Cai J, Caperello ND, Carlson K, Castilla-Rubio JC, ... ... Jarvis ED, et al. The Earth BioGenome Project 2020: Starting the clock. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35042800 DOI: 10.1073/pnas.2115635118 |
0.08 |
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| 2001 |
Jarvis E. The importance of anatomical substrates Proceedings of the Atlantic Symposium On Computational Biology and Genome Information Systems and Technolgoy, Cbgist 2001. 5. |
0.037 |
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| 2020 |
Jarvis ED. Erich D. Jarvis Current Biology. 30: R202-R203. DOI: 10.1016/j.cub.2020.01.015 |
0.01 |
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