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Bethany L. Kormos, Ph.D. - Publications

Affiliations: 
2004 University of Minnesota, Twin Cities, Minneapolis, MN 
Area:
Theoretical Chemistry, Molecular Modeling, Computational Chemistry, Structure, Reactivity, and Mechanism
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19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Ferruz N, Doerr S, Vanase-Frawley MA, Zou Y, Chen X, Marr ES, Nelson RT, Kormos BL, Wager TT, Hou X, Villalobos A, Sciabola S, De Fabritiis G. Dopamine D3 receptor antagonist reveals a cryptic pocket in aminergic GPCRs. Scientific Reports. 8: 897. PMID 29343833 DOI: 10.1038/S41598-018-19345-7  0.308
2011 Kormos BL, Pieniazek SN, Beveridge DL, Baranger AM. U1A protein-stem loop 2 RNA recognition: prediction of structural differences from protein mutations. Biopolymers. 95: 591-606. PMID 21384338 DOI: 10.1002/Bip.21616  0.55
2008 Anunciado D, Agumeh M, Kormos BL, Beveridge DL, Knee JL, Baranger AM. Characterization of the dynamics of an essential helix in the U1A protein by time-resolved fluorescence measurements. The Journal of Physical Chemistry. B. 112: 6122-30. PMID 18293956 DOI: 10.1021/Jp076896C  0.52
2007 Kormos BL, Benitex Y, Baranger AM, Beveridge DL. Affinity and specificity of protein U1A-RNA complex formation based on an additive component free energy model. Journal of Molecular Biology. 371: 1405-19. PMID 17603075 DOI: 10.1016/J.Jmb.2007.06.003  0.539
2007 Kormos BL, Baranger AM, Beveridge DL. A study of collective atomic fluctuations and cooperativity in the U1A-RNA complex based on molecular dynamics simulations. Journal of Structural Biology. 157: 500-13. PMID 17194603 DOI: 10.1016/J.Jsb.2006.10.022  0.547
2006 Kormos BL, Baranger AM, Beveridge DL. Do collective atomic fluctuations account for cooperative effects? Molecular dynamics studies of the U1A-RNA complex. Journal of the American Chemical Society. 128: 8992-3. PMID 16834346 DOI: 10.1021/Ja0606071  0.553
2006 Kormos BL, Cramer CJ, Gladfelter WL. Pseudo-two-dimensional structures (HXYH)3n2H6n (XY = GaN, SiC, GeC, SiSi, or GeGe; n = 1-3): density functional characterization of structures and energetics. The Journal of Physical Chemistry. A. 110: 494-502. PMID 16405321 DOI: 10.1021/Jp051885+  0.477
2006 Zhao Y, Kormos BL, Beveridge DL, Baranger AM. Molecular dynamics simulation studies of a protein-RNA complex with a selectively modified binding interface. Biopolymers. 81: 256-69. PMID 16278830 DOI: 10.1002/Bip.20408  0.548
2006 Beveridge DL, Dixit SB, Kormos BL, Baranger AM, Jayaram B. Molecular dynamics simulations and free energy calculations on protein-nucleic acid complexes Computational Studies of Rna and Dna. 211-234. DOI: 10.1007/978-1-4020-4851-3_8  0.486
2005 Kormos BL, Jegier JA, Ewbank PC, Pernisz U, Young VG, Cramer CJ, Gladfelter WL. Oligomeric rods of alkyl- and hydridogallium imides. Journal of the American Chemical Society. 127: 1493-503. PMID 15686383 DOI: 10.1021/Ja045149F  0.481
2004 Kormos BL, Liebman JF, Cramer CJ. 298 K enthalpies of formation of monofluorinated alkanes: Theoretical predictions for methyl, ethyl, isopropyl and tert-butyl fluoride Journal of Physical Organic Chemistry. 17: 656-664. DOI: 10.1002/Poc.801  0.427
2003 Kormos BL, Cramer CJ. Pi bonding and negative hyperconjugation in mono-, di-, and triaminoborane, -alane, -gallane, and -indane. Inorganic Chemistry. 42: 6691-700. PMID 14552621 DOI: 10.1021/Ic034584S  0.494
2003 Kormos BL, Cramer CJ. Solvation effects on alternative nucleophilic substitution reaction paths for chloride/allyl chloride and gamma-methylated congeners. The Journal of Organic Chemistry. 68: 6375-86. PMID 12895074 DOI: 10.1021/Jo034527G  0.469
2002 Sherer EC, Kinsinger CR, Kormos BL, Thompson JD, Cramer CJ. Electronic structure and bonding in hexacoordinate silyl-palladium complexes. Angewandte Chemie (International Ed. in English). 41: 1953-6. PMID 19750644 DOI: 10.1002/1521-3773(20020603)41:11<1953::Aid-Anie1953>3.0.Co;2-H  0.692
2002 Kormos BL, Cramer CJ. Adiabatic connection method for X- + RX nucleophilic substitution reactions (X = F, Cl) Journal of Physical Organic Chemistry. 15: 712-720. DOI: 10.1002/Poc.548  0.465
2002 Sherer EC, Kinsinger CR, Kormos BL, Thompson JD, Cramer CJ. Electronic Structure and Bonding in Hexacoordinate Silyl–Palladium Complexes Support from the National Science Foundation (CHE-9876792) is gratefully acknowledged. Angewandte Chemie. 114: 2033. DOI: 10.1002/1521-3757(20020603)114:11<2033::Aid-Ange2033>3.0.Co;2-5  0.69
2001 Cramer CJ, Kormos BL, Seierstad M, Sherer EC, Winget P. Biradical and zwitterionic cyclizations of oxy-substituted enyne-allenes. Organic Letters. 3: 1881-4. PMID 11405735 DOI: 10.1021/Ol015935E  0.684
2001 Cramer CJ, Kormos BL, Winget P, Audette VM, Beebe JM, Brauer CS, Burdick WR, Cochran EW, Eklov BL, Giese TJ, Jun Y, Kesavan LSD, Kinsinger CR, Minyaev ME, Rajamani R, et al. A Cooperative Molecular Modeling Exercise—The Hypersurface as Classroom Journal of Chemical Education. 78: 1202. DOI: 10.1021/Ed078P1202  0.697
2001 Cramer CJ, Kormos BL, Winget P, Audette VM, Beebe JM, Brauer CS, Burdick WR, Cochran EW, Eklov BM, Giese TJ, Jun Y, Kesavan LSD, Kinsinger CR, Minyaev ME, Rajamani R, et al. A cooperative molecular modeling exercise - The hypersurface as classroom Journal of Chemical Education. 78: 1202-1205.  0.683
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