☰

Evgenia N. Nikolova, Ph.D. - Publications

Affiliations: 
2011 University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
Structure and dynamics of nucleic acids and ribonucleoproteins using NMR spectroscopy
Tree Info Similar researchers PubMed Report error

20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Malaga Gadea FC, Nikolova EN. Structural plasticity of pioneer factor Sox2 and DNA bendability modulate nucleosome engagement and Sox2-Oct4 synergism. Journal of Molecular Biology. 167916. PMID 36495920 DOI: 10.1016/j.jmb.2022.167916  0.386
2020 Nikolova EN, Stanfield RL, Dyson HJ, Wright PE. A conformational switch in the zinc finger protein Kaiso mediates differential readout of specific and methylated DNA sequences. Biochemistry. PMID 32352758 DOI: 10.1021/Acs.Biochem.0C00253  0.477
2018 Nikolova EN, Stanfield RL, Dyson J, Wright PE. CH---O Hydrogen Bonds Mediate Highly Specific Recognition of Methylated CpG Sites by the Zinc Finger Protein Kaiso. Biochemistry. PMID 29546986 DOI: 10.1021/Acs.Biochem.8B00065  0.345
2018 Nikolova E, Stanfield R, Dyson HJ, Wright P. Backbone 1H, 15N chemical shift assignments of Kaiso E535A zinc finger DNA binding domain in complex with a double CpG-methylated DNA resembling the specific Kaiso binding site (KBS) Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr27368  0.393
2018 Nikolova E, Stanfield R, Dyson HJ, Wright P. Backbone 1H, 15N chemical shift assignments of Kaiso E535Q zinc finger DNA binding domain in complex with its double CpG-methylated DNA consensus binding site (MeCG2) Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr27364  0.393
2016 Zhou H, Kimsey IJ, Nikolova EN, Sathyamoorthy B, Grazioli G, McSally J, Bai T, Wunderlich CH, Kreutz C, Andricioaei I, Al-Hashimi HM. m(1)A and m(1)G disrupt A-RNA structure through the intrinsic instability of Hoogsteen base pairs. Nature Structural & Molecular Biology. PMID 27478929 DOI: 10.1038/Nsmb.3270  0.764
2015 Salmon L, Giambaşu GM, Nikolova EN, Petzold K, Bhattacharya A, Case DA, Al-Hashimi HM. Modulating RNA Alignment Using Directional Dynamic Kinks: Application in Determining an Atomic-Resolution Ensemble for a Hairpin using NMR Residual Dipolar Couplings. Journal of the American Chemical Society. PMID 26306428 DOI: 10.1021/Jacs.5B07229  0.75
2014 Nikolova EN, Stull F, Al-Hashimi HM. Guanine to inosine substitution leads to large increases in the population of a transient G·C Hoogsteen base pair. Biochemistry. 53: 7145-7. PMID 25339065 DOI: 10.1021/Bi5011909  0.657
2014 Alvey HS, Gottardo FL, Nikolova EN, Al-Hashimi HM. Widespread transient Hoogsteen base pairs in canonical duplex DNA with variable energetics. Nature Communications. 5: 4786. PMID 25185517 DOI: 10.1038/Ncomms5786  0.744
2013 Nikolova EN, Zhou H, Gottardo FL, Alvey HS, Kimsey IJ, Al-Hashimi HM. A historical account of hoogsteen base-pairs in duplex DNA. Biopolymers. 99: 955-68. PMID 23818176 DOI: 10.1002/Bip.22334  0.692
2013 Nikolova EN, Goh GB, Brooks CL, Al-Hashimi HM. Characterizing the protonation state of cytosine in transient G·C Hoogsteen base pairs in duplex DNA. Journal of the American Chemical Society. 135: 6766-9. PMID 23506098 DOI: 10.1021/Ja400994E  0.665
2012 Nikolova EN, Bascom GD, Andricioaei I, Al-Hashimi HM. Probing sequence-specific DNA flexibility in a-tracts and pyrimidine-purine steps by nuclear magnetic resonance (13)C relaxation and molecular dynamics simulations. Biochemistry. 51: 8654-64. PMID 23035755 DOI: 10.1021/Bi3009517  0.68
2012 Prevette LE, Nikolova EN, Al-Hashimi HM, Banaszak Holl MM. Intrinsic dynamics of DNA-polymer complexes: a mechanism for DNA release. Molecular Pharmaceutics. 9: 2743-9. PMID 22823140 DOI: 10.1021/Mp3002864  0.659
2012 Nikolova EN, Gottardo FL, Al-Hashimi HM. Probing transient Hoogsteen hydrogen bonds in canonical duplex DNA using NMR relaxation dispersion and single-atom substitution. Journal of the American Chemical Society. 134: 3667-70. PMID 22309937 DOI: 10.1021/Ja2117816  0.636
2011 Bothe JR, Nikolova EN, Eichhorn CD, Chugh J, Hansen AL, Al-Hashimi HM. Characterizing RNA dynamics at atomic resolution using solution-state NMR spectroscopy. Nature Methods. 8: 919-31. PMID 22036746 DOI: 10.1038/Nmeth.1735  0.663
2011 Nikolova EN, Kim E, Wise AA, O'Brien PJ, Andricioaei I, Al-Hashimi HM. Transient Hoogsteen base pairs in canonical duplex DNA. Nature. 470: 498-502. PMID 21270796 DOI: 10.1038/Nature09775  0.718
2010 Nikolova EN, Al-Hashimi HM. Thermodynamics of RNA melting, one base pair at a time. Rna (New York, N.Y.). 16: 1687-91. PMID 20660079 DOI: 10.1261/Rna.2235010  0.687
2009 Nikolova EN, Al-Hashimi HM. Preparation, resonance assignment, and preliminary dynamics characterization of residue specific 13C/15N-labeled elongated DNA for the study of sequence-directed dynamics by NMR. Journal of Biomolecular Nmr. 45: 9-16. PMID 19636798 DOI: 10.1007/S10858-009-9350-Y  0.686
2009 Hansen AL, Nikolova EN, Casiano-Negroni A, Al-Hashimi HM. Extending the range of microsecond-to-millisecond chemical exchange detected in labeled and unlabeled nucleic acids by selective carbon R(1rho) NMR spectroscopy. Journal of the American Chemical Society. 131: 3818-9. PMID 19243182 DOI: 10.1021/Ja8091399  0.691
2008 Pereira MJ, Nikolova EN, Hiley SL, Jaikaran D, Collins RA, Walter NG. Single VS ribozyme molecules reveal dynamic and hierarchical folding toward catalysis. Journal of Molecular Biology. 382: 496-509. PMID 18656481 DOI: 10.1016/J.Jmb.2008.07.020  0.495
Show low-probability matches.