Zhendong Ma, Ph.D. - Related publications

2002 University of Alabama, Birmingham, Birmingham, AL, United States 
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Gažová I, Lefevre L, Bush SJ, Clohisey S, Arner E, de Hoon M, Severin J, van Duin L, Andersson R, Lengeling A, Hume DA, Summers KM. The Transcriptional Network That Controls Growth Arrest and Macrophage Differentiation in the Human Myeloid Leukemia Cell Line THP-1. Frontiers in Cell and Developmental Biology. 8: 498. PMID 32719792 DOI: 10.3389/fcell.2020.00498   
2020 Ochiai H, Hayashi T, Umeda M, Yoshimura M, Harada A, Shimizu Y, Nakano K, Saitoh N, Liu Z, Yamamoto T, Okamura T, Ohkawa Y, Kimura H, Nikaido I. Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells. Science Advances. 6: eaaz6699. PMID 32596448 DOI: 10.1126/sciadv.aaz6699   
2020 Metzl-Raz E, Kafri M, Yaakov G, Barkai N. Gene Transcription as a Limiting Factor in Protein Production and Cell Growth. G3 (Bethesda, Md.). PMID 32694199 DOI: 10.1534/g3.120.401303   
2020 Zeng J, Chen JY, Meng J, Chen Z. Inflammation and DNA methylation coregulate the CtBP-PCAF-c-MYC transcriptional complex to activate the expression of a long non-coding RNA in acute pancreatitis. International Journal of Biological Sciences. 16: 2116-2130. PMID 32549759 DOI: 10.7150/ijbs.43557   
2020 Jiang Q, Lu B, Wang G, Ye H. Transcriptional Inhibition of by Crustacean Female Sex Hormone in the Mud Crab, . International Journal of Molecular Sciences. 21. PMID 32722594 DOI: 10.3390/ijms21155300   
2020 Hernández-Candia CN, Tucker CL. Optogenetic Control of Gene Expression Using Cryptochrome 2 and a Light-Activated Degron. Methods in Molecular Biology (Clifton, N.J.). 2173: 151-158. PMID 32651916 DOI: 10.1007/978-1-0716-0755-8_10   
2020 Cho H, Li Y, Archacki S, Wang F, Yu G, Chakrabarti S, Guo Y, Chen Q, Wang QK. Splice variants of lncRNA RNA ANRIL exert opposing effects on endothelial cell activities associated with coronary artery disease. Rna Biology. 1-11. PMID 32602777 DOI: 10.1080/15476286.2020.1771519   
2020 Verzi MP, Shivdasani RA. Epigenetic regulation of intestinal stem cell differentiation. American Journal of Physiology. Gastrointestinal and Liver Physiology. PMID 32628072 DOI: 10.1152/ajpgi.00084.2020   
2020 Liu M, Zhu Y, Xing F, Liu S, Xia Y, Jiang Q, Qin J. The polycomb group protein PCGF6 mediates germline gene silencing by recruiting histone-modifying proteins to target gene promoters. The Journal of Biological Chemistry. PMID 32482889 DOI: 10.1074/jbc.RA119.012121   
2020 Partridge EC, Chhetri SB, Prokop JW, Ramaker RC, Jansen CS, Goh ST, Mackiewicz M, Newberry KM, Brandsmeier LA, Meadows SK, Messer CL, Hardigan AA, Coppola CJ, Dean EC, Jiang S, et al. Occupancy maps of 208 chromatin-associated proteins in one human cell type. Nature. 583: 720-728. PMID 32728244 DOI: 10.1038/s41586-020-2023-4   
2020 Liu W, Li N, Zhang M, Liu Y, Sun J, Zhang S, Peng S, Hua J. Eif2s3y regulates the proliferation of spermatogonial stem cells via Wnt6/-catenin signaling pathway. Biochimica Et Biophysica Acta. Molecular Cell Research. 118790. PMID 32621839 DOI: 10.1016/j.bbamcr.2020.118790   
2020 Wang J, Shi K, Wu Z, Zhang C, Li Y, Deng H, Zhao S, Deng W. Disruption of the interaction between TFIIAαβ and TFIIA recognition element inhibits RNA polymerase II gene transcription in a promoter context-dependent manner. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 194611. PMID 32745626 DOI: 10.1016/j.bbagrm.2020.194611   
2020 Chung Nien Chin S, O'Connor L, Scurr M, Busada JT, Graham AN, Alipour Talesh G, Tran CP, Sarkar S, Minamoto T, Giraud AS, Cidlowski JA, Sutton P, Menheniott TR. Coordinate expression loss of GKN1 and GKN2 in gastric cancer via impairment of a glucocorticoid-responsive enhancer. American Journal of Physiology. Gastrointestinal and Liver Physiology. PMID 32538140 DOI: 10.1152/ajpgi.00019.2020   
2020 Barter MJ, Cheung K, Falk J, Panagiotopoulos AC, Cosimini C, O'Brien S, Teja-Putri K, Neill G, Deehan DJ, Young DA. Dynamic chromatin accessibility landscape changes following interleukin-1 stimulation. Epigenetics. 1-14. PMID 32741307 DOI: 10.1080/15592294.2020.1789266   
2020 Goulet DR, Foster JP, Zawistowski JS, Bevill SM, Noel MP, Olivares-Quintero JF, Sciaky N, Singh D, Santos C, Pattenden SG, Davis IJ, Johnson GL. Discrete Adaptive Responses to MEK Inhibitor in Subpopulations of Triple-Negative Breast Cancer. Molecular Cancer Research : McR. PMID 32753473 DOI: 10.1158/1541-7786.MCR-19-1011   
2020 Choi SH, Cho SY, Song J, Hur MW. KLHL4, a novel p53 target gene, inhibits cell proliferation by activating p21. Biochemical and Biophysical Research Communications. PMID 32753315 DOI: 10.1016/j.bbrc.2020.07.100   
2020 Kamiyama T, Sun W, Tani N, Nakamura A, Niwa R. Poly(A) Binding Protein Is Required for Nuclear Localization of the Ecdysteroidogenic Transcription Factor Molting Defective in the Prothoracic Gland of . Frontiers in Genetics. 11: 636. PMID 32676099 DOI: 10.3389/fgene.2020.00636   
2020 Sangeeta K, Yenugu S. siRNA-mediated knockdown of sperm-associated antigen 11a (Spag11a) mRNA in epididymal primary epithelial cells affects proliferation: a transcriptome analyses. Cell and Tissue Research. 379: 601-612. PMID 31691005 DOI: 10.1007/s00441-019-03107-6   
2020 Zhen Y, Smith RD, Finkelman FD, Shao WH. Ezh2-mediated epigenetic modification is required for allogeneic T cell-induced lupus disease. Arthritis Research & Therapy. 22: 133. PMID 32503684 DOI: 10.1186/s13075-020-02225-9   
2020 Geigges M, Gubser PM, Unterstab G, Lecoultre Y, Paro R, Hess C. Reference Genes for Expression Studies in Human CD8 Naïve and Effector Memory T Cells under Resting and Activating Conditions. Scientific Reports. 10: 9411. PMID 32523060 DOI: 10.1038/s41598-020-66367-1   
2020 Su Z, Yang B, Zeng Z, Zhu S, Wang C, Lei S, Jiang Y, Lin L. Metastasis-associated gene MAPK15 promotes the migration and invasion of osteosarcoma cells via the c-Jun/MMPs pathway. Oncology Letters. 20: 99-112. PMID 32565938 DOI: 10.3892/ol.2020.11544   
2020 Cores Á, Piquero M, Villacampa M, León R, Menéndez JC. NRF2 Regulation Processes as a Source of Potential Drug Targets against Neurodegenerative Diseases. Biomolecules. 10. PMID 32545924 DOI: 10.3390/biom10060904   
2020 Grubert F, Srivas R, Spacek DV, Kasowski M, Ruiz-Velasco M, Sinnott-Armstrong N, Greenside P, Narasimha A, Liu Q, Geller B, Sanghi A, Kulik M, Sa S, Rabinovitch M, Kundaje A, et al. Landscape of cohesin-mediated chromatin loops in the human genome. Nature. 583: 737-743. PMID 32728247 DOI: 10.1038/s41586-020-2151-x   
2020 Trostnikov MV, Veselkina ER, Krementsova AV, Boldyrev SV, Roshina NV, Pasyukova EG. Modulated Expression of the Protein Kinase GSK3 in Motor and Dopaminergic Neurons Increases Female Lifespan in . Frontiers in Genetics. 11: 668. PMID 32695143 DOI: 10.3389/fgene.2020.00668   
2020 Hwang S, Kim S, Kim K, Yeom J, Park S, Kim I. Euchromatin histone methyltransferase II (EHMT2) regulates the expression of ras-related GTP binding C (RRAGC) protein. Bmb Reports. PMID 32684241   
2020 Vandermeulen MD, Cullen PJ. New Aspects of Invasive Growth Regulation Identified by Functional Profiling of MAPK Pathway Targets in . Genetics. PMID 32665277 DOI: 10.1534/genetics.120.303369   
2020 Ao X, Ding W, Zhang Y, Ding D, Liu Y. TCF21: a critical transcription factor in health and cancer. Journal of Molecular Medicine (Berlin, Germany). PMID 32542449 DOI: 10.1007/s00109-020-01934-7   
2020 Arun G, Aggarwal D, Spector DL. Long Non-Coding RNA: Functional Implications. Non-Coding Rna. 6. PMID 32503170 DOI: 10.3390/ncrna6020022   
2020 Clayton K, Vallejo A, Sirvent S, Davies J, Porter G, Reading IC, Lim F, Ardern-Jones MR, Polak ME. Machine learning applied to atopic dermatitis transcriptome reveals distinct therapy-dependent modification of the keratinocyte immunophenotype. The British Journal of Dermatology. PMID 32730675 DOI: 10.1111/bjd.19431   
2020 Cong J, Tao C, Zhang X, Zhang H, Cheng T, Liu C. Transgenic Ectopic Overexpression of Broad Complex () in the Silk Gland Inhibits the Expression of Silk Fibroin Genes of . Insects. 11. PMID 32560131 DOI: 10.3390/insects11060374   
2020 Poudel S, Tsunemoto H, Seif Y, Sastry AV, Szubin R, Xu S, Machado H, Olson CA, Anand A, Pogliano J, Nizet V, Palsson BO. Revealing 29 sets of independently modulated genes in , their regulators, and role in key physiological response. Proceedings of the National Academy of Sciences of the United States of America. PMID 32616573 DOI: 10.1073/pnas.2008413117   
2020 Tao T, Shi H, Mariani L, Abraham BJ, Durbin AD, Zimmerman MW, Powers JT, Missios P, Ross KN, Perez-Atayde AR, Bulyk ML, Young RA, Daley GQ, Look AT. LIN28B regulates transcription and potentiates MYCN-induced neuroblastoma through binding to ZNF143 at target gene promotors. Proceedings of the National Academy of Sciences of the United States of America. PMID 32601179 DOI: 10.1073/pnas.1922692117   
2020 Bakker R, Mani M, Carthew RW. The Wg and Dpp morphogens regulate gene expression by modulating the frequency of transcriptional bursts. Elife. 9. PMID 32568073 DOI: 10.7554/eLife.56076   
2020 Peng JJ, Wu YC, Wang SQ, Niu JF, Cao XY. SmbHLH53 Is Relevant to Jasmonate Signaling and Plays Dual Roles in Regulating the Genes for Enzymes in the Pathway for Salvianolic Acid B Biosynthesis in Salvia miltiorrhiza. Gene. 144920. PMID 32593720 DOI: 10.1016/j.gene.2020.144920   
2020 Liu LK, Gao Y, Gao RL, Li DL, Zhang QX, Wang KJ, Liu HP. A barrier-to-autointegration factor promotes white spot syndrome virus infection in a crustacean Cherax quadricarinatus. Fish & Shellfish Immunology. PMID 32693160 DOI: 10.1016/j.fsi.2020.07.031   
2020 Zhang Z, Wei J, Ren R, Zhang X. Anti-virus effects of interferon regulatory factors (IRFs) identified in ascidian Ciona savignyi. Fish & Shellfish Immunology. PMID 32750546 DOI: 10.1016/j.fsi.2020.07.059   
2020 Zeng H, Hui Y, Qin W, Chen P, Huang L, Zhong W, Lin L, Lv H, Qin X. High-throughput sequencing-based analysis of gene expression of hepatitis B virus infection-associated human hepatocellular carcinoma. Oncology Letters. 20: 18. PMID 32774491 DOI: 10.3892/ol.2020.11879   
2020 Mercatelli D, Bortolotti M, Giorgi FM. Transcriptional network inference and master regulator analysis of the response to ribosome-inactivating proteins in leukemia cells. Toxicology. 441: 152531. PMID 32593706 DOI: 10.1016/j.tox.2020.152531   
2020 Chen CC, Wong TY, Chin TY, Lee WH, Kuo CY, Hsu YC. Systems biology approach to exploring the effect of cyclic stretching on cardiac cell physiology. Aging. 12. PMID 32759460 DOI: 10.18632/aging.103465   
2020 Roth SJ, Heinz S, Benner C. ARTDeco: automatic readthrough transcription detection. Bmc Bioinformatics. 21: 214. PMID 32456667 DOI: 10.1186/s12859-020-03551-0   
2020 Lee Y, Kwak JM, Lee JS. Endogenous p21-Dependent Transgene Control for CHO Cell Engineering. Acs Synthetic Biology. PMID 32539343 DOI: 10.1021/acssynbio.9b00526   
2020 Cheng ZL, Zhang ML, Lin HP, Gao C, Song JB, Zheng Z, Li L, Zhang Y, Shen X, Zhang H, Huang Z, Zhan W, Zhang C, Hu X, Sun YP, et al. The Zscan4-Tet2 Transcription Nexus Regulates Metabolic Rewiring and Enhances Proteostasis to Promote Reprogramming. Cell Reports. 32: 107877. PMID 32668244 DOI: 10.1016/j.celrep.2020.107877   
2020 Kwak MS, Lee HH, Cha JM, Shin HP, Jeon JW, Yoon JY. Novel candidate drugs in anti-tumor necrosis factor refractory Crohn's diseases: in silico study for drug repositioning. Scientific Reports. 10: 10708. PMID 32612148 DOI: 10.1038/s41598-020-67801-0   
2020 Zheng L, Wang S, Ling M, Lv Z, Lin S. Hcp distribute in the cytoplasm and regulate TNF signaling pathway in BHK-21 cells. 3 Biotech. 10: 301. PMID 32550118 DOI: 10.1007/s13205-020-02296-0   
2020 Debarba JA, Sehabiague MPC, Monteiro KM, Gerber AL, Vasconcelos ATR, Ferreira HB, Zaha A. Transcriptomic Analysis of the Early Strobilar Development of . Pathogens (Basel, Switzerland). 9. PMID 32545493 DOI: 10.3390/pathogens9060465   
2020 Kreuzer M, Banerjee A, Birts CN, Darley M, Tavassoli A, Ivan M, Blaydes JP. Glycolysis, via NADH-dependent dimerisation of CtBPs, regulates hypoxia-induced expression of CAIX and stem-like breast cancer cell survival. Febs Letters. PMID 32618367 DOI: 10.1002/1873-3468.13874   
2020 García-Rodríguez R, Hiller M, Jiménez-Gracia L, van der Pal Z, Balog J, Adamzek K, Aartsma-Rus A, Spitali P. Premature termination codons in the gene cause reduced local mRNA synthesis. Proceedings of the National Academy of Sciences of the United States of America. 117: 16456-16464. PMID 32616572 DOI: 10.1073/pnas.1910456117   
2020 Nuthikattu S, Milenkovic D, Rutledge JC, Villablanca AC. Lipotoxic Injury Differentially Regulates Brain Microvascular Gene Expression in Male Mice. Nutrients. 12. PMID 32545722 DOI: 10.3390/nu12061771   
2020 Davis JE, Insigne KD, Jones EM, Hastings QA, Boldridge WC, Kosuri S. Dissection of c-AMP Response Element Architecture by Using Genomic and Episomal Massively Parallel Reporter Assays. Cell Systems. PMID 32603702 DOI: 10.1016/j.cels.2020.05.011   
2020 Wang Y, Zhang X, Zhao Y, Yang J, He Y, Li G, Ma W, Huang X, Su J. Transcription factor PyHY5 binds to the promoters of PyWD40 and PyMYB10 and regulates its expression in red pear 'Yunhongli No. 1'. Plant Physiology and Biochemistry : Ppb. 154: 665-674. PMID 32738704 DOI: 10.1016/j.plaphy.2020.07.008