Jonathan C. Trinidad, Ph.D. - Publications

Affiliations: 
2003 Harvard University, Cambridge, MA, United States 
Area:
nicotinic acetylcholine receptors (AChR) and GABAa receptors

34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Pirinelli AL, Trinidad JC, Pohl NLB. Introducing Students to Protein Analysis Techniques: Separation and Comparative Analysis of Gluten Proteins in Various Wheat Strains Journal of Chemical Education. 93: 330-334. DOI: 10.1021/acs.jchemed.5b00311  0.76
2015 Zhu F, Trinidad JC, Clemmer DE. Glycopeptide Site Heterogeneity and Structural Diversity Determined by Combined Lectin Affinity Chromatography/IMS/CID/MS Techniques. Journal of the American Society For Mass Spectrometry. 26: 1092-102. PMID 25840811 DOI: 10.1007/s13361-015-1110-5  0.76
2015 Zhu F, Glover MS, Shi H, Trinidad JC, Clemmer DE. Populations of metal-glycan structures influence MS fragmentation patterns. Journal of the American Society For Mass Spectrometry. 26: 25-35. PMID 25315458 DOI: 10.1007/s13361-014-1000-2  0.76
2015 Morris M, Knudsen GM, Maeda S, Trinidad JC, Ioanoviciu A, Burlingame AL, Mucke L. Tau post-translational modifications in wild-type and human amyloid precursor protein transgenic mice Nature Neuroscience. 18: 1183-1189. DOI: 10.1038/nn.4067  0.76
2014 Pekkurnaz G, Trinidad JC, Wang X, Kong D, Schwarz TL. Glucose regulates mitochondrial motility via Milton modification by O-GlcNAc transferase. Cell. 158: 54-68. PMID 24995978 DOI: 10.1016/j.cell.2014.06.007  0.76
2013 Trinidad JC, Schoepfer R, Burlingame AL, Medzihradszky KF. N- and O-glycosylation in the murine synaptosome. Molecular & Cellular Proteomics : McP. 12: 3474-88. PMID 23816992 DOI: 10.1074/mcp.M113.030007  0.76
2013 Gautam V, Trinidad JC, Rimerman RA, Costa BM, Burlingame AL, Monaghan DT. Nedd4 is a specific E3 ubiquitin ligase for the NMDA receptor subunit GluN2D. Neuropharmacology. 74: 96-107. PMID 23639431 DOI: 10.1016/j.neuropharm.2013.04.035  0.76
2013 Liu W, Baker SS, Trinidad J, Burlingame AL, Baker RD, Forte JG, Virtuoso LP, Egilmez NK, Zhu L. Inhibition of lysosomal enzyme activities by proton pump inhibitors. Journal of Gastroenterology. 48: 1343-52. PMID 23478938 DOI: 10.1007/s00535-013-0774-5  0.76
2013 Just S, Illing S, Trester-Zedlitz M, Lau EK, Kotowski SJ, Miess E, Mann A, Doll C, Trinidad JC, Burlingame AL, von Zastrow M, Schulz S. Differentiation of opioid drug effects by hierarchical multi-site phosphorylation. Molecular Pharmacology. 83: 633-9. PMID 23239825 DOI: 10.1124/mol.112.082875  0.76
2013 Trinidad JC, Thalhammer A, Burlingame AL, Schoepfer R. Activity-dependent protein dynamics define interconnected cores of co-regulated postsynaptic proteins. Molecular & Cellular Proteomics : McP. 12: 29-41. PMID 23035237 DOI: 10.1074/mcp.M112.019976  0.76
2012 Mitchell DJ, Blasier KR, Jeffery ED, Ross MW, Pullikuth AK, Suo D, Park J, Smiley WR, Lo KW, Shabanowitz J, Deppmann CD, Trinidad JC, Hunt DF, Catling AD, Pfister KK. Trk activation of the ERK1/2 kinase pathway stimulates intermediate chain phosphorylation and recruits cytoplasmic dynein to signaling endosomes for retrograde axonal transport. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 15495-510. PMID 23115187 DOI: 10.1523/JNEUROSCI.5599-11.2012  0.76
2012 Shimbo K, Hsu GW, Nguyen H, Mahrus S, Trinidad JC, Burlingame AL, Wells JA. Quantitative profiling of caspase-cleaved substrates reveals different drug-induced and cell-type patterns in apoptosis. Proceedings of the National Academy of Sciences of the United States of America. 109: 12432-7. PMID 22802652 DOI: 10.1073/pnas.1208616109  0.76
2012 Trinidad JC, Barkan DT, Gulledge BF, Thalhammer A, Sali A, Schoepfer R, Burlingame AL. Global identification and characterization of both O-GlcNAcylation and phosphorylation at the murine synapse. Molecular & Cellular Proteomics : McP. 11: 215-29. PMID 22645316 DOI: 10.1074/mcp.O112.018366  0.76
2012 Agard NJ, Mahrus S, Trinidad JC, Lynn A, Burlingame AL, Wells JA. Global kinetic analysis of proteolysis via quantitative targeted proteomics. Proceedings of the National Academy of Sciences of the United States of America. 109: 1913-8. PMID 22308409 DOI: 10.1073/pnas.1117158109  0.76
2012 Medzihradszky KF, Trinidad JC. Unusual fragmentation of Pro-Ser/Thr-containing peptides detected in collision-induced dissociation spectra. Journal of the American Society For Mass Spectrometry. 23: 602-7. PMID 21952759 DOI: 10.1007/s13361-011-0216-7  0.76
2011 Lau EK, Trester-Zedlitz M, Trinidad JC, Kotowski SJ, Krutchinsky AN, Burlingame AL, von Zastrow M. Quantitative encoding of the effect of a partial agonist on individual opioid receptors by multisite phosphorylation and threshold detection. Science Signaling. 4: ra52. PMID 21868358 DOI: 10.1126/scisignal.2001748  0.76
2011 Baker PR, Trinidad JC, Chalkley RJ. Modification site localization scoring integrated into a search engine. Molecular & Cellular Proteomics : McP. 10: M111.008078. PMID 21490164 DOI: 10.1074/mcp.M111.008078  0.76
2010 David DC, Ollikainen N, Trinidad JC, Cary MP, Burlingame AL, Kenyon C. Widespread protein aggregation as an inherent part of aging in C. elegans. Plos Biology. 8: e1000450. PMID 20711477 DOI: 10.1371/journal.pbio.1000450  0.76
2009 Fernandez F, Trinidad JC, Blank M, Feng DD, Burlingame AL, Garner CC. Normal protein composition of synapses in Ts65Dn mice: a mouse model of Down syndrome. Journal of Neurochemistry. 110: 157-69. PMID 19453946 DOI: 10.1111/j.1471-4159.2009.06110.x  0.76
2009 Zhang W, St-Gelais F, Grabner CP, Trinidad JC, Sumioka A, Morimoto-Tomita M, Kim KS, Straub C, Burlingame AL, Howe JR, Tomita S. A transmembrane accessory subunit that modulates kainate-type glutamate receptors. Neuron. 61: 385-96. PMID 19217376 DOI: 10.1016/j.neuron.2008.12.014  0.76
2009 Thalhammer A, Trinidad JC, Burlingame AL, Schoepfer R. Densin-180: revised membrane topology, domain structure and phosphorylation status. Journal of Neurochemistry. 109: 297-302. PMID 19187442 DOI: 10.1111/j.1471-4159.2009.05951.x  0.76
2008 Mahrus S, Trinidad JC, Barkan DT, Sali A, Burlingame AL, Wells JA. Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini. Cell. 134: 866-76. PMID 18722006 DOI: 10.1016/j.cell.2008.08.012  0.76
2008 Trinidad JC, Thalhammer A, Specht CG, Lynn AJ, Baker PR, Schoepfer R, Burlingame AL. Quantitative analysis of synaptic phosphorylation and protein expression. Molecular & Cellular Proteomics : McP. 7: 684-96. PMID 18056256 DOI: 10.1074/mcp.M700170-MCP200  0.76
2007 Olsen O, Funke L, Long JF, Fukata M, Kazuta T, Trinidad JC, Moore KA, Misawa H, Welling PA, Burlingame AL, Zhang M, Bredt DS. Renal defects associated with improper polarization of the CRB and DLG polarity complexes in MALS-3 knockout mice. The Journal of Cell Biology. 179: 151-64. PMID 17923534 DOI: 10.1083/jcb.200702054  0.76
2007 Hirsch J, Hansen KC, Sapru A, Frank JA, Chalkley RJ, Fang X, Trinidad JC, Baker P, Burlingame AL, Matthay MA. Impact of low and high tidal volumes on the rat alveolar epithelial type II cell proteome. American Journal of Respiratory and Critical Care Medicine. 175: 1006-13. PMID 17363773 DOI: 10.1164/rccm.200605-621OC  0.76
2006 Vosseller K, Trinidad JC, Chalkley RJ, Specht CG, Thalhammer A, Lynn AJ, Snedecor JO, Guan S, Medzihradszky KF, Maltby DA, Schoepfer R, Burlingame AL. O-linked N-acetylglucosamine proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry. Molecular & Cellular Proteomics : McP. 5: 923-34. PMID 16452088 DOI: 10.1074/mcp.T500040-MCP200  0.76
2006 Trinidad JC, Specht CG, Thalhammer A, Schoepfer R, Burlingame AL. Comprehensive identification of phosphorylation sites in postsynaptic density preparations. Molecular & Cellular Proteomics : McP. 5: 914-22. PMID 16452087 DOI: 10.1074/mcp.T500041-MCP200  0.76
2005 Olsen O, Moore KA, Fukata M, Kazuta T, Trinidad JC, Kauer FW, Streuli M, Misawa H, Burlingame AL, Nicoll RA, Bredt DS. Neurotransmitter release regulated by a MALS-liprin-alpha presynaptic complex. The Journal of Cell Biology. 170: 1127-34. PMID 16186258 DOI: 10.1083/jcb.200503011  0.76
2005 Fukata Y, Tzingounis AV, Trinidad JC, Fukata M, Burlingame AL, Nicoll RA, Bredt DS. Molecular constituents of neuronal AMPA receptors. The Journal of Cell Biology. 169: 399-404. PMID 15883194 DOI: 10.1083/jcb.200501121  0.76
2005 Trinidad JC, Thalhammer A, Specht CG, Schoepfer R, Burlingame AL. Phosphorylation state of postsynaptic density proteins. Journal of Neurochemistry. 92: 1306-16. PMID 15748150 DOI: 10.1111/j.1471-4159.2004.02943.x  0.76
2005 Vosseller K, Hansen KC, Chalkley RJ, Trinidad JC, Wells L, Hart GW, Burlingame AL. Quantitative analysis of both protein expression and serine / threonine post-translational modifications through stable isotope labeling with dithiothreitol. Proteomics. 5: 388-98. PMID 15648052 DOI: 10.1002/pmic.200401066  0.76
2004 Trinidad JC, Cohen JB. Neuregulin inhibits acetylcholine receptor aggregation in myotubes. The Journal of Biological Chemistry. 279: 31622-8. PMID 15155732 DOI: 10.1074/jbc.M400044200  0.76
2003 Chiara DC, Trinidad JC, Wang D, Ziebell MR, Sullivan D, Cohen JB. Identification of amino acids in the nicotinic acetylcholine receptor agonist binding site and ion channel photolabeled by 4-[(3-trifluoromethyl)-3H-diazirin-3-yl]benzoylcholine, a novel photoaffinity antagonist. Biochemistry. 42: 271-83. PMID 12525154 DOI: 10.1021/bi0269815  0.76
2000 Trinidad JC, Fischbach GD, Cohen JB. The Agrin/MuSK signaling pathway is spatially segregated from the neuregulin/ErbB receptor signaling pathway at the neuromuscular junction. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 20: 8762-70. PMID 11102484  0.76
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