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Carlo Colantuoni, Ph.D. - Publications

Affiliations: 
2002 Johns Hopkins University, Baltimore, MD 
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40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Ament SA, Cortes-Gutierrez M, Herb BR, Mocci E, Colantuoni C, McCarthy MM. A single-cell genomic atlas for maturation of the human cerebellum during early childhood. Science Translational Medicine. 15: eade1283. PMID 37824600 DOI: 10.1126/scitranslmed.ade1283  0.38
2023 Ji L, Wang A, Sonthalia S, Naiman DQ, Younes L, Colantuoni C, Geman D. CellCover Defines Conserved Cell Types and Temporal Progression in scRNA-seq Data across Mammalian Neocortical Development. Biorxiv : the Preprint Server For Biology. PMID 37383947 DOI: 10.1101/2023.04.06.535943  0.332
2022 Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, et al. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Research. PMID 36318260 DOI: 10.1093/nar/gkac962  0.323
2020 Sullivan MN, Brill SA, Mangus LM, Jeong YJ, Solis CV, Knight AC, Colantuoni C, Keceli G, Paolocci N, Queen SE, Mankowski JL. Upregulation of Superoxide Dismutase 2 by Astrocytes in the SIV/Macaque Model of HIV-Associated Neurologic Disease. Journal of Neuropathology and Experimental Neurology. PMID 32783052 DOI: 10.1093/Jnen/Nlaa084  0.3
2020 Micali N, Kim SK, Diaz-Bustamante M, Stein-O'Brien G, Seo S, Shin JH, Rash BG, Ma S, Wang Y, Olivares NA, Arellano JI, Maynard KR, Fertig EJ, Cross AJ, Bürli RW, ... ... Colantuoni C, et al. Variation of Human Neural Stem Cells Generating Organizer States In Vitro before Committing to Cortical Excitatory or Inhibitory Neuronal Fates. Cell Reports. 31: 107599. PMID 32375049 DOI: 10.1016/J.Celrep.2020.107599  0.34
2020 Burke EE, Chenoweth JG, Shin JH, Collado-Torres L, Kim SK, Micali N, Wang Y, Colantuoni C, Straub RE, Hoeppner DJ, Chen HY, Sellers A, Shibbani K, Hamersky GR, Diaz Bustamante M, et al. Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs. Nature Communications. 11: 462. PMID 31974374 DOI: 10.1038/S41467-019-14266-Z  0.36
2019 Gådin JR, Buil A, Colantuoni C, Jaffe AE, Nielsen J, Shin JH, Hyde TM, Kleinman JE, Plath N, Eriksson P, Brunak S, Didriksen M, Weinberger DR, Folkersen L. Comparison of quantitative trait loci methods: Total expression and allelic imbalance method in brain RNA-seq. Plos One. 14: e0217765. PMID 31206532 DOI: 10.1371/Journal.Pone.0217765  0.394
2019 Stein-O'Brien GL, Clark BS, Sherman T, Zibetti C, Hu Q, Sealfon R, Liu S, Qian J, Colantuoni C, Blackshaw S, Goff LA, Fertig EJ. Decomposing Cell Identity for Transfer Learning across Cellular Measurements, Platforms, Tissues, and Species. Cell Systems. 8: 395-411.e8. PMID 31121116 DOI: 10.1016/J.Cels.2019.04.004  0.367
2019 Pearl JR, Colantuoni C, Bergey DE, Funk CC, Shannon P, Basu B, Casella AM, Oshone RT, Hood L, Price ND, Ament SA. Genome-Scale Transcriptional Regulatory Network Models of Psychiatric and Neurodegenerative Disorders. Cell Systems. PMID 30772379 DOI: 10.1016/J.Cels.2019.01.002  0.491
2018 Jaffe AE, Straub RE, Shin JH, Tao R, Gao Y, Collado-Torres L, Kam-Thong T, Xi HS, Quan J, Chen Q, Colantuoni C, Ulrich WS, Maher BJ, Deep-Soboslay A, et al. Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis. Nature Neuroscience. 21: 1117-1125. PMID 30050107 DOI: 10.1038/S41593-018-0197-Y  0.464
2018 Ursini G, Punzi G, Chen Q, Marenco S, Robinson JF, Porcelli A, Hamilton EG, Mitjans M, Maddalena G, Begemann M, Seidel J, Yanamori H, Jaffe AE, Berman KF, Egan MF, ... ... Colantuoni C, et al. Convergence of placenta biology and genetic risk for schizophrenia. Nature Medicine. PMID 29808008 DOI: 10.1038/S41591-018-0021-Y  0.394
2018 Ursini G, Punzi G, Chen Q, Marenco S, Robinson JF, Porcelli A, Hamilton E, Mitjans M, Maddalena G, Begemann M, Seidel J, Yanamori H, Jaffe AE, Berman KF, Egan MF, ... ... Colantuoni C, et al. O4.7. PLACENTAL GENE EXPRESSION, OBSTETRICAL HISTORY AND POLYGENIC RISK FOR SCHIZOPHRENIA Schizophrenia Bulletin. 44: S85-S86. DOI: 10.1093/Schbul/Sby015.213  0.369
2017 Stein-O'Brien GL, Carey JL, Lee WS, Considine M, Favorov AV, Flam E, Guo T, Li S, Marchionni L, Sherman T, Sivy S, Gaykalova DA, McKay RD, Ochs MF, Colantuoni C, et al. PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF. Bioinformatics (Oxford, England). PMID 28174896 DOI: 10.1093/Bioinformatics/Btx058  0.379
2017 Ursini G, Punzi G, Chen Q, Marenco S, Jaffe A, Straub R, Berman K, Hashimoto R, Colantuoni C, Blasi G, Annamaria P, Giancarlo M, Joshua R, Emily H, Allessandro B, et al. 115.1 Placental Gene Expression Mediates the Interaction Between Obstetrical History and Genetic Risk for Schizophrenia Schizophrenia Bulletin. 43: S60-S60. DOI: 10.1093/Schbul/Sbx021.158  0.415
2016 Horiuchi Y, Kondo MA, Okada K, Takayanagi Y, Tanaka T, Ho T, Varvaris M, Tajinda K, Hiyama H, Ni K, Colantuoni C, Schretlen D, Cascella NG, Pevsner J, Ishizuka K, et al. Molecular signatures associated with cognitive deficits in schizophrenia: a study of biopsied olfactory neural epithelium. Translational Psychiatry. 6: e915. PMID 27727244 DOI: 10.1038/Tp.2016.154  0.606
2015 Jaffe AE, Hyde T, Kleinman J, Weinbergern DR, Chenoweth JG, McKay RD, Leek JT, Colantuoni C. Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis. Bmc Bioinformatics. 16: 372. PMID 26545828 DOI: 10.1186/S12859-015-0808-5  0.401
2014 Fertig EJ, Stein-O'Brien G, Jaffe A, Colantuoni C. Pattern identification in time-course gene expression data with the CoGAPS matrix factorization. Methods in Molecular Biology (Clifton, N.J.). 1101: 87-112. PMID 24233779 DOI: 10.1007/978-1-62703-721-1_6  0.393
2013 Haberman RP, Colantuoni C, Koh MT, Gallagher M. Behaviorally activated mRNA expression profiles produce signatures of learning and enhanced inhibition in aged rats with preserved memory. Plos One. 8: e83674. PMID 24349543 DOI: 10.1371/Journal.Pone.0083674  0.314
2013 Horiuchi Y, Kano S, Ishizuka K, Cascella NG, Ishii S, Talbot CC, Jaffe AE, Okano H, Pevsner J, Colantuoni C, Sawa A. Olfactory cells via nasal biopsy reflect the developing brain in gene expression profiles: utility and limitation of the surrogate tissues in research for brain disorders. Neuroscience Research. 77: 247-50. PMID 24120685 DOI: 10.1016/J.Neures.2013.09.010  0.654
2013 Kondo MA, Tajinda K, Colantuoni C, Hiyama H, Seshadri S, Huang B, Pou S, Furukori K, Hookway C, Jaaro-Peled H, Kano SI, Matsuoka N, Harada K, Ni K, Pevsner J, et al. Unique pharmacological actions of atypical neuroleptic quetiapine: possible role in cell cycle/fate control. Translational Psychiatry. 3: e243. PMID 23549417 DOI: 10.1038/Tp.2013.19  0.641
2013 Mor E, Kano S, Colantuoni C, Sawa A, Navon R, Shomron N. MicroRNA-382 expression is elevated in the olfactory neuroepithelium of schizophrenia patients. Neurobiology of Disease. 55: 1-10. PMID 23542694 DOI: 10.1016/J.Nbd.2013.03.011  0.392
2012 Numata S, Ye T, Hyde TM, Guitart-Navarro X, Tao R, Wininger M, Colantuoni C, Weinberger DR, Kleinman JE, Lipska BK. DNA methylation signatures in development and aging of the human prefrontal cortex. American Journal of Human Genetics. 90: 260-72. PMID 22305529 DOI: 10.1016/j.ajhg.2011.12.020  0.389
2011 Colantuoni C, Lipska BK, Ye T, Hyde TM, Tao R, Leek JT, Colantuoni EA, Elkahloun AG, Herman MM, Weinberger DR, Kleinman JE. Temporal dynamics and genetic control of transcription in the human prefrontal cortex. Nature. 478: 519-23. PMID 22031444 DOI: 10.1038/Nature10524  0.439
2011 Hyde TM, Lipska BK, Ali T, Mathew SV, Law AJ, Metitiri OE, Straub RE, Ye T, Colantuoni C, Herman MM, Bigelow LB, Weinberger DR, Kleinman JE. Expression of GABA signaling molecules KCC2, NKCC1, and GAD1 in cortical development and schizophrenia. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 11088-95. PMID 21795557 DOI: 10.1523/Jneurosci.1234-11.2011  0.373
2011 Haberman RP, Colantuoni C, Stocker AM, Schmidt AC, Pedersen JT, Gallagher M. Prominent hippocampal CA3 gene expression profile in neurocognitive aging. Neurobiology of Aging. 32: 1678-92. PMID 19913943 DOI: 10.1016/J.Neurobiolaging.2009.10.005  0.345
2010 Barth AS, Kumordzie A, Colantuoni C, Margulies KB, Cappola TP, Tomaselli GF. Reciprocal regulation of metabolic and signaling pathways. Bmc Genomics. 11: 197. PMID 20334672 DOI: 10.1186/1471-2164-11-197  0.414
2010 Ishizuka K, Kano S, Colantuoni C, Schretlen D, Cascella NG, Sawa A. A translational approach for schizophrenia: Systematic cell/tissue engineering combined with detailed phenotypic characterization and molecular brain imaging Neuroscience Research. 68: e18. DOI: 10.1016/J.Neures.2010.07.315  0.352
2008 Colantuoni C, Hyde TM, Mitkus S, Joseph A, Sartorius L, Aguirre C, Creswell J, Johnson E, Deep-Soboslay A, Herman MM, Lipska BK, Weinberger DR, Kleinman JE. Age-related changes in the expression of schizophrenia susceptibility genes in the human prefrontal cortex. Brain Structure & Function. 213: 255-71. PMID 18470533 DOI: 10.1007/S00429-008-0181-5  0.519
2008 Menezes LF, Piontek K, Colantuoni C, Patterson S, Bader J, Germino GG. 165: Establishing a Framework to Infer Gene Regulatory Networks for Kidney Development American Journal of Kidney Diseases. 51: B69. DOI: 10.1053/J.Ajkd.2008.02.174  0.327
2008 Colantuoni C, Hyde TM, Mitkus S, Joseph A, Sartorius L, Aguirre C, Creswell J, Johnson E, Deep-Soboslay A, Herman MM, Lipska BK, Weinberger DR, Kleinman JE. Age-related changes in the expression of schizophrenia susceptibility genes in the human prefrontal cortex (Brain Structure and Function (2008) DOI: 10.1007/s00429-008-0181-5) Brain Structure and Function. 213: 273. DOI: 10.1007/S00429-008-0188-Y  0.456
2006 Gallagher M, Colantuoni C, Eichenbaum H, Haberman RP, Rapp PR, Tanila H, Wilson IA. Individual differences in neurocognitive aging of the medial temporal lobe. Age (Dordrecht, Netherlands). 28: 221-33. PMID 22253491 DOI: 10.1007/S11357-006-9017-5  0.318
2006 Lehrmann E, Colantuoni C, Deep-Soboslay A, Becker KG, Lowe R, Huestis MA, Hyde TM, Kleinman JE, Freed WJ. Transcriptional changes common to human cocaine, cannabis and phencyclidine abuse. Plos One. 1: e114. PMID 17205118 DOI: 10.1371/Journal.Pone.0000114  0.336
2004 Abounader R, Reznik T, Colantuoni C, Martinez-Murillo F, Rosen EM, Laterra J. Regulation of c-Met-dependent gene expression by PTEN. Oncogene. 23: 9173-82. PMID 15516982 DOI: 10.1038/Sj.Onc.1208146  0.414
2002 Colantuoni C, Henry G, Zeger S, Pevsner J. SNOMAD (Standardization and NOrmalization of MicroArray Data): web-accessible gene expression data analysis. Bioinformatics (Oxford, England). 18: 1540-1. PMID 12424128 DOI: 10.1093/Bioinformatics/18.11.1540  0.615
2002 Colantuoni C, Henry G, Zeger S, Pevsner J. Local mean normalization of microarray element signal intensities across an array surface: quality control and correction of spatially systematic artifacts. Biotechniques. 32: 1316-20. PMID 12074162 DOI: 10.2144/02326Mt02  0.566
2002 Colantuoni C, Comi A, Purcell AE, Pevsner J. The use of microarrays to study childhood developmental brain disorders Current Genomics. 3: 21-31. DOI: 10.2174/1389202023350660  0.719
2001 Colantuoni C, Jeon OH, Hyder K, Chenchik A, Khimani AH, Narayanan V, Hoffman EP, Kaufmann WE, Naidu S, Pevsner J. Gene expression profiling in postmortem Rett Syndrome brain: differential gene expression and patient classification. Neurobiology of Disease. 8: 847-65. PMID 11592853 DOI: 10.1006/Nbdi.2001.0428  0.72
2000 Colantuoni C, Purcell AE, Bouton CM, Pevsner J. High throughput analysis of gene expression in the human brain. Journal of Neuroscience Research. 59: 1-10. PMID 10658179 DOI: 10.1002/(Sici)1097-4547(20000101)59:1<1::Aid-Jnr1>3.0.Co;2-2  0.701
2000 Colantuoni C, Jeon O, Bouton C, Purcell A, Hyder K, Chenchik A, Khimani A, Yolken R, Zeger S, Kaufmann W, Naidu S, Pevsner J. 29. Differential gene expression in human postmortem Rett syndrome brain revealed by cDNA microarray Biological Psychiatry. 47: S8-S9. DOI: 10.1016/S0006-3223(00)00287-0  0.746
1999 Khimani AH, Colantuoni C, Pevsner J, Garlick RK, Killian JB. MICROMAX™ microarray system I: a complete system for high throughput gene expression analysis and drug discovery Nature Genetics. 23: 55-55. DOI: 10.1038/14340  0.685
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