James H. Thomas - Publications

University of Washington, Seattle, Seattle, WA 

79 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Schneider SE, Thomas JH. Accidental genetic engineers: horizontal sequence transfer from parasitoid wasps to their Lepidopteran hosts. Plos One. 9: e109446. PMID 25296163 DOI: 10.1371/Journal.Pone.0109446  0.514
2014 Schwartz JJ, Roach DJ, Thomas JH, Shendure J. Primate evolution of the recombination regulator PRDM9. Nature Communications. 5: 4370. PMID 25001002 DOI: 10.1038/Ncomms5370  0.333
2013 Lachowiec J, Lemus T, Thomas JH, Murphy PJ, Nemhauser JL, Queitsch C. The protein chaperone HSP90 can facilitate the divergence of gene duplicates. Genetics. 193: 1269-77. PMID 23410833 DOI: 10.1534/Genetics.112.148098  0.351
2012 Santoni de Sio FR, Barde I, Offner S, Kapopoulou A, Corsinotti A, Bojkowska K, Genolet R, Thomas JH, Luescher IF, Pinschewer D, Harris N, Trono D. KAP1 regulates gene networks controlling T-cell development and responsiveness. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 26: 4561-75. PMID 22872677 DOI: 10.1096/Fj.12-206177  0.336
2012 Santoni de Sio FR, Massacand J, Barde I, Offner S, Corsinotti A, Kapopoulou A, Bojkowska K, Dagklis A, Fernandez M, Ghia P, Thomas JH, Pinschewer D, Harris N, Trono D. KAP1 regulates gene networks controlling mouse B-lymphoid cell differentiation and function. Blood. 119: 4675-85. PMID 22452978 DOI: 10.1182/Blood-2011-12-401117  0.349
2011 Emerson RO, Thomas JH. Gypsy and the birth of the SCAN domain. Journal of Virology. 85: 12043-52. PMID 21865395 DOI: 10.1128/Jvi.00867-11  0.624
2011 George RD, McVicker G, Diederich R, Ng SB, MacKenzie AP, Swanson WJ, Shendure J, Thomas JH. Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection. Genome Research. 21: 1686-94. PMID 21795384 DOI: 10.1101/Gr.121327.111  0.318
2011 Thomas JH, Schneider S. Coevolution of retroelements and tandem zinc finger genes. Genome Research. 21: 1800-12. PMID 21784874 DOI: 10.1101/Gr.121749.111  0.616
2010 Jafari G, Burghoorn J, Kawano T, Mathew M, Mörck C, Axäng C, Ailion M, Thomas JH, Culotti JG, Swoboda P, Pilon M. Genetics of extracellular matrix remodeling during organ growth using the Caenorhabditis elegans pharynx model. Genetics. 186: 969-82. PMID 20805556 DOI: 10.1534/Genetics.110.120519  0.706
2009 Thomas JH, Emerson RO, Shendure J. Extraordinary molecular evolution in the PRDM9 fertility gene. Plos One. 4: e8505. PMID 20041164 DOI: 10.1371/Journal.Pone.0008505  0.639
2009 Thomas JH, Emerson RO. Evolution of C2H2-zinc finger genes revisited. Bmc Evolutionary Biology. 9: 51. PMID 19261184 DOI: 10.1186/1471-2148-9-51  0.665
2009 Emerson RO, Thomas JH. Adaptive evolution in zinc finger transcription factors. Plos Genetics. 5: e1000325. PMID 19119423 DOI: 10.1371/Journal.Pgen.1000325  0.665
2008 Mahoney TR, Luo S, Round EK, Brauner M, Gottschalk A, Thomas JH, Nonet ML. Intestinal signaling to GABAergic neurons regulates a rhythmic behavior in Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 105: 16350-5. PMID 18852466 DOI: 10.1073/Pnas.0803617105  0.758
2008 Thomas JH, Robertson HM. The Caenorhabditis chemoreceptor gene families. Bmc Biology. 6: 42. PMID 18837995 DOI: 10.1186/1741-7007-6-42  0.377
2008 Reiner DJ, Ailion M, Thomas JH, Meyer BJ. C. elegans anaplastic lymphoma kinase ortholog SCD-2 controls dauer formation by modulating TGF-beta signaling. Current Biology : Cb. 18: 1101-9. PMID 18674914 DOI: 10.1016/J.Cub.2008.06.060  0.692
2008 Biron D, Wasserman S, Thomas JH, Samuel AD, Sengupta P. An olfactory neuron responds stochastically to temperature and modulates Caenorhabditis elegans thermotactic behavior. Proceedings of the National Academy of Sciences of the United States of America. 105: 11002-7. PMID 18667708 DOI: 10.1073/Pnas.0805004105  0.303
2008 Merrihew GE, Davis C, Ewing B, Williams G, Käll L, Frewen BE, Noble WS, Green P, Thomas JH, MacCoss MJ. Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations. Genome Research. 18: 1660-9. PMID 18653799 DOI: 10.1101/Gr.077644.108  0.586
2008 Thomas JH. Genome evolution in Caenorhabditis. Briefings in Functional Genomics & Proteomics. 7: 211-6. PMID 18573804 DOI: 10.1093/Bfgp/Eln022  0.451
2008 Smith ED, Tsuchiya M, Fox LA, Dang N, Hu D, Kerr EO, Johnston ED, Tchao BN, Pak DN, Welton KL, Promislow DE, Thomas JH, Kaeberlein M, Kennedy BK. Quantitative evidence for conserved longevity pathways between divergent eukaryotic species. Genome Research. 18: 564-70. PMID 18340043 DOI: 10.1101/Gr.074724.107  0.449
2007 Inoue T, Ailion M, Poon S, Kim HK, Thomas JH, Sternberg PW. Genetic analysis of dauer formation in Caenorhabditis briggsae. Genetics. 177: 809-18. PMID 17660533 DOI: 10.1534/Genetics.107.078857  0.718
2007 McElwee JJ, Schuster E, Blanc E, Piper MD, Thomas JH, Patel DS, Selman C, Withers DJ, Thornton JM, Partridge L, Gems D. Evolutionary conservation of regulated longevity assurance mechanisms. Genome Biology. 8: R132. PMID 17612391 DOI: 10.1186/Gb-2007-8-7-R132  0.707
2007 Thomas JH. Rapid birth-death evolution specific to xenobiotic cytochrome P450 genes in vertebrates. Plos Genetics. 3: e67. PMID 17500592 DOI: 10.1371/Journal.Pgen.0030067  0.434
2007 Maydan JS, Flibotte S, Edgley ML, Lau J, Selzer RR, Richmond TA, Pofahl NJ, Thomas JH, Moerman DG. Efficient high-resolution deletion discovery in Caenorhabditis elegans by array comparative genomic hybridization. Genome Research. 17: 337-47. PMID 17267812 DOI: 10.1101/Gr.5690307  0.319
2007 Zhao Z, Thomas JH, Chen N, Sheps JA, Baillie DL. Comparative genomics and adaptive selection of the ATP-binding-cassette gene family in caenorhabditis species. Genetics. 175: 1407-18. PMID 17194779 DOI: 10.1534/Genetics.106.066720  0.408
2006 Wheeler JM, Thomas JH. Identification of a novel gene family involved in osmotic stress response in Caenorhabditis elegans. Genetics. 174: 1327-36. PMID 16980399 DOI: 10.1534/Genetics.106.059089  0.634
2006 Harris J, Lowden M, Clejan I, Tzoneva M, Thomas JH, Hodgkin J, Ahmed S. Mutator phenotype of Caenorhabditis elegans DNA damage checkpoint mutants. Genetics. 174: 601-16. PMID 16951081 DOI: 10.1534/Genetics.106.058701  0.303
2006 Thomas JH. Adaptive evolution in two large families of ubiquitin-ligase adapters in nematodes and plants. Genome Research. 16: 1017-30. PMID 16825662 DOI: 10.1101/Gr.5089806  0.374
2006 Reiner DJ, Weinshenker D, Tian H, Thomas JH, Nishiwaki K, Miwa J, Gruninger T, Leboeuf B, Garcia LR. Behavioral genetics of caenorhabditis elegans unc-103-encoded erg-like K(+) channel. Journal of Neurogenetics. 20: 41-66. PMID 16807195 DOI: 10.1080/01677060600788826  0.615
2006 Kraemer BC, Burgess JK, Chen JH, Thomas JH, Schellenberg GD. Molecular pathways that influence human tau-induced pathology in Caenorhabditis elegans. Human Molecular Genetics. 15: 1483-96. PMID 16600994 DOI: 10.1093/Hmg/Ddl067  0.406
2006 Thomas JH. Concerted evolution of two novel protein families in Caenorhabditis species. Genetics. 172: 2269-81. PMID 16415360 DOI: 10.1534/Genetics.105.052746  0.415
2006 Thomas JH. Analysis of homologous gene clusters in Caenorhabditis elegans reveals striking regional cluster domains. Genetics. 172: 127-43. PMID 16291650 DOI: 10.1534/Genetics.104.040030  0.381
2006 Choy RK, Kemner JM, Thomas JH. Fluoxetine-resistance genes in Caenorhabditis elegans function in the intestine and may act in drug transport. Genetics. 172: 885-92. PMID 16118202 DOI: 10.1534/Genetics.103.024869  0.789
2005 Efimenko E, Bubb K, Mak HY, Holzman T, Leroux MR, Ruvkun G, Thomas JH, Swoboda P. Analysis of xbx genes in C. elegans. Development (Cambridge, England). 132: 1923-34. PMID 15790967 DOI: 10.1242/Dev.01775  0.46
2005 Thomas JH, Kelley JL, Robertson HM, Ly K, Swanson WJ. Adaptive evolution in the SRZ chemoreceptor families of Caenorhabditis elegans and Caenorhabditis briggsae. Proceedings of the National Academy of Sciences of the United States of America. 102: 4476-81. PMID 15761060 DOI: 10.1073/Pnas.0406469102  0.364
2005 Stewart MK, Clark NL, Merrihew G, Galloway EM, Thomas JH. High genetic diversity in the chemoreceptor superfamily of Caenorhabditis elegans. Genetics. 169: 1985-96. PMID 15520260 DOI: 10.1534/Genetics.104.035329  0.442
2004 Li J, Brown G, Ailion M, Lee S, Thomas JH. NCR-1 and NCR-2, the C. elegans homologs of the human Niemann-Pick type C1 disease protein, function upstream of DAF-9 in the dauer formation pathways. Development (Cambridge, England). 131: 5741-52. PMID 15509773 DOI: 10.1242/Dev.01408  0.727
2004 McElwee JJ, Schuster E, Blanc E, Thomas JH, Gems D. Shared transcriptional signature in Caenorhabditis elegans Dauer larvae and long-lived daf-2 mutants implicates detoxification system in longevity assurance. The Journal of Biological Chemistry. 279: 44533-43. PMID 15308663 DOI: 10.1074/Jbc.M406207200  0.702
2004 Petersen CI, McFarland TR, Stepanovic SZ, Yang P, Reiner DJ, Hayashi K, George AL, Roden DM, Thomas JH, Balser JR. In vivo identification of genes that modify ether-a-go-go-related gene activity in Caenorhabditis elegans may also affect human cardiac arrhythmia. Proceedings of the National Academy of Sciences of the United States of America. 101: 11773-8. PMID 15280551 DOI: 10.1073/Pnas.0306005101  0.392
2003 Ailion M, Thomas JH. Isolation and characterization of high-temperature-induced Dauer formation mutants in Caenorhabditis elegans. Genetics. 165: 127-44. PMID 14504222  0.727
2003 McElwee J, Bubb K, Thomas JH. Transcriptional outputs of the Caenorhabditis elegans forkhead protein DAF-16. Aging Cell. 2: 111-21. PMID 12882324 DOI: 10.1046/J.1474-9728.2003.00043.X  0.724
2003 Kraemer BC, Zhang B, Leverenz JB, Thomas JH, Trojanowski JQ, Schellenberg GD. Neurodegeneration and defective neurotransmission in a Caenorhabditis elegans model of tauopathy. Proceedings of the National Academy of Sciences of the United States of America. 100: 9980-5. PMID 12872001 DOI: 10.1073/Pnas.1533448100  0.306
2003 Schafer JC, Haycraft CJ, Thomas JH, Yoder BK, Swoboda P. XBX-1 encodes a dynein light intermediate chain required for retrograde intraflagellar transport and cilia assembly in Caenorhabditis elegans. Molecular Biology of the Cell. 14: 2057-70. PMID 12802075 DOI: 10.1091/Mbc.E02-10-0677  0.383
2001 Thomas JH. Nematodes are smarter than you think Neuron. 30: 7-8. PMID 11343638 DOI: 10.1016/S0896-6273(01)00256-2  0.304
2001 Haycraft CJ, Swoboda P, Taulman PD, Thomas JH, Yoder BK. The C. elegans homolog of the murine cystic kidney disease gene Tg737 functions in a ciliogenic pathway and is disrupted in osm-5 mutant worms. Development (Cambridge, England). 128: 1493-505. PMID 11290289  0.355
2001 Robatzek M, Niacaris T, Steger K, Avery L, Thomas JH. eat-11 encodes GPB-2, a Gβ5 ortholog that interacts with Goα and Gqα to regulate C. elegans behavior Current Biology. 11: 288-293. PMID 11250160 DOI: 10.1016/S0960-9822(01)00074-4  0.355
2000 Inoue T, Thomas JH. Suppressors of transforming growth factor-β pathway mutants in the Caenorhabditis elegans dauer formation pathway Genetics. 156: 1035-1046. PMID 11063683  0.352
2000 Kunkel MT, Johnstone DB, Thomas JH, Salkoff L. Mutants of a temperature-sensitive two-P domain potassium channel. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 20: 7517-24. PMID 11027209 DOI: 10.1523/Jneurosci.20-20-07517.2000  0.336
2000 Swoboda P, Adler HT, Thomas JH. The RFX-type transcription factor DAF-19 regulates sensory neuron cilium formation in C. elegans Molecular Cell. 5: 411-421. PMID 10882127 DOI: 10.1016/S1097-2765(00)80436-0  0.396
2000 Birnby DA, Link EM, Vowels JJ, Tian H, Colacurcio PL, Thomas JH. A transmembrane guanylyl cyclase (DAF-11) and Hsp90 (DAF-21) regulate a common set of chemosensory behaviors in Caenorhabditis elegans Genetics. 155: 85-104. PMID 10790386  0.359
2000 Chamberlin HM, Thomas JH. The bromodomain protein LIN-49 and trithorax-related protein LIN-59 affect development and gene expression in Caenorhabditis elegans Development. 127: 713-723. PMID 10648230  0.336
2000 Inoue T, Thomas JH. Targets of TGF-β signaling in caenorhabditis elegans dauer formation Developmental Biology. 217: 192-204. PMID 10625546 DOI: 10.1006/Dbio.1999.9545  0.359
1999 Reiner DJ, Newton EM, Tian H, Thomas JH. Diverse behavioural defects caused by mutations in Caenorhabditis elegans unc-43 CaM kinase II Nature. 402: 199-202. PMID 10647014 DOI: 10.1038/46072  0.369
1999 Thomas JH. The effects of sensory deprivation Nature. 402: 740-741. PMID 10617194 DOI: 10.1038/45422  0.433
1999 Darby C, Cosma CL, Thomas JH, Manoil C. Lethal paralysis of Caenorhabditis elegans by Pseudomonas aeruginosa Proceedings of the National Academy of Sciences of the United States of America. 96: 15202-15207. PMID 10611362 DOI: 10.1073/Pnas.96.26.15202  0.399
1999 Weinshenker D, Wei A, Salkoff L, Thomas JH. Block of an ether-a-go-go-like K(+) channel by imipramine rescues egl-2 excitation defects in Caenorhabditis elegans. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 19: 9831-40. PMID 10559392 DOI: 10.1523/Jneurosci.19-22-09831.1999  0.556
1999 Chamberlin HM, Brown KB, Sternberg PW, Thomas JH. Characterization of seven genes affecting Caenorhabditis elegans hindgut development. Genetics. 153: 731-42. PMID 10511553  0.359
1999 Choy RK, Thomas JH. Fluoxetine-resistant mutants in C. elegans define a novel family of transmembrane proteins. Molecular Cell. 4: 143-52. PMID 10488330 DOI: 10.1016/S1097-2765(00)80362-7  0.78
1999 Ailion M, Inoue T, Weaver CI, Holdcraft RW, Thomas JH. Neurosecretory control of aging in Caenorhabditis elegans Proceedings of the National Academy of Sciences of the United States of America. 96: 7394-7397. PMID 10377425 DOI: 10.1073/Pnas.96.13.7394  0.718
1999 Paradis S, Ailion M, Toker A, Thomas JH, Ruvkun G. A PDK1 homolog is necessary and sufficient to transduce AGE-1 PI3 kinase signals that regulate diapause in Caenorhabditis elegans. Genes & Development. 13: 1438-52. PMID 10364160 DOI: 10.1101/Gad.13.11.1438  0.697
1998 Thomas JH. Social life and the single nucleotide: Foraging behavior in C. elegans Cell. 94: 549-550. PMID 9741618 DOI: 10.1016/S0092-8674(00)81595-0  0.349
1998 Thomas JH, Inoue T. Methuselah meets diabetes Bioessays. 20: 113-115. PMID 9631656 DOI: 10.1002/(Sici)1521-1878(199802)20:2<113::Aid-Bies3>3.0.Co;2-U  0.382
1997 Tax FE, Thomas JH, Ferguson EL, Horvitz HR. Identification and characterization of genes that interact with lin-12 in Caenorhabditis elegans. Genetics. 147: 1675-95. PMID 9409830  0.327
1997 Chamberlin HM, Palmer RE, Newman AP, Sternberg PW, Baillie DL, Thomas JH. The PAX gene egl-38 mediates developmental patterning in Caenorhabditis elegans. Development (Cambridge, England). 124: 3919-28. PMID 9374390  0.341
1997 Johnstone DB, Wei A, Butler A, Salkoff L, Thomas JH. Behavioral defects in C. elegans egl-36 mutants result from potassium channels shifted in voltage-dependence of activation. Neuron. 19: 151-64. PMID 9247271 DOI: 10.1016/S0896-6273(00)80355-4  0.365
1997 Iwasaki K, Staunton J, Saifee O, Nonet M, Thomas JH. aex-3 encodes a novel regulator of presynaptic activity in C. elegans. Neuron. 18: 613-22. PMID 9136770 DOI: 10.1016/S0896-6273(00)80302-5  0.376
1997 Iwasaki K, Thomas JH. Genetics in rhythm Trends in Genetics. 13: 111-115. PMID 9066270 DOI: 10.1016/S0168-9525(97)01059-7  0.311
1996 Schackwitz WS, Inoue T, Thomas JH. Chemosensory neurons function in parallel to mediate a pheromone response in C. elegans Neuron. 17: 719-728. PMID 8893028 DOI: 10.1016/S0896-6273(00)80203-2  0.408
1996 Malone EA, Inoue T, Thomas JH. Genetic analysis of the roles of daf-28 and age-1 in regulating Caenorhabditis elegans dauer formation. Genetics. 143: 1193-205. PMID 8807293  0.315
1995 Reiner DJ, Weinshenker D, Thomas JH. Analysis of dominant mutations affecting muscle excitation in Caenorhabditis elegans. Genetics. 141: 961-76. PMID 8582640  0.577
1995 Iwasaki K, Liu DWC, Thomas JH. Genes that control a temperature-compensated ultradian clock in Caenorhabditis elegans Proceedings of the National Academy of Sciences of the United States of America. 92: 10317-10321. PMID 7479775 DOI: 10.1073/Pnas.92.22.10317  0.356
1995 Weinshenker D, Garriga G, Thomas JH. Genetic and pharmacological analysis of neurotransmitters controlling egg laying in C. elegans. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 15: 6975-85. PMID 7472454 DOI: 10.1523/Jneurosci.15-10-06975.1995  0.549
1994 Tax FE, Yeargers JJ, Thomas JH. Sequence of C. elegans lag-2 reveals a cell-signalling domain shared with Delta and Serrate of Drosophila Nature. 368: 150-154. PMID 8139658 DOI: 10.1038/368150A0  0.452
1994 Malone EA, Thomas JH. A screen for nonconditional dauer-constitutive mutations in Caenorhabditis elegans. Genetics. 136: 879-86. PMID 8005442  0.306
1994 Tax FE, Thomas JH. Cell-Cell Interactions: Receiving signals in the nematode embryo Current Biology. 4: 914-916. PMID 7850427 DOI: 10.1016/S0960-9822(00)00203-7  0.317
1993 Thomas JH, Birnby DA, Vowels JJ. Evidence for parallel processing of sensory information controlling dauer formation in Caenorhabditis elegans Genetics. 134: 1105-1117. PMID 8375650  0.344
1993 Thomas JH. Thinking about genetic redundancy Trends in Genetics. 9: 395-399. PMID 8310537 DOI: 10.1016/0168-9525(93)90140-D  0.361
1993 Thomas JH. Chemosensory regulation of development in C. elegans Bioessays. 15: 791-797. PMID 8141797 DOI: 10.1002/Bies.950151204  0.386
1992 Vowels JJ, Thomas JH. Genetic analysis of chemosensory control of dauer formation in Caenorhabditis elegans Genetics. 130: 105-123. PMID 1732156  0.359
1990 Thomas JH. Genetic analysis of defecation in Caenorhabditis elegans Genetics. 124: 855-872. PMID 2323555  0.307
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