Giorgio A. Ascoli - Publications

George Mason University, Washington, DC 

156 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Peng H, Liu Y, Jiang S, Li Y, Zhao S, Yun Z, Zhao ZH, Zhang L, Wang G, Chen X, Manubens-Gil L, Hang Y, Garcia-Forn M, Wang W, De Rubeis S, ... ... Ascoli G, et al. Full-Spectrum Neuronal Diversity and Stereotypy through Whole Brain Morphometry. Research Square. PMID 37546984 DOI: 10.21203/  0.379
2023 Wheeler D, Banduri S, Sankararaman S, Vinay S, Ascoli G. Unsupervised classification of brain-wide axons reveals neuronal projection blueprint. Research Square. PMID 37461601 DOI: 10.21203/  0.626
2023 Wheeler DW, Kopsick JD, Sutton N, Tecuatl C, Komendantov AO, Nadella K, Ascoli GA. v2.0: a knowledge base enabling data-driven spiking neural network simulations of rodent hippocampal circuits. Biorxiv : the Preprint Server For Biology. PMID 37425693 DOI: 10.1101/2023.05.12.540597  0.67
2023 Liu L, Yun Z, Manubens-Gil L, Chen H, Xiong F, Dong HW, Zeng H, Hawrylycz M, Ascoli G, Peng H. Neuronal Connectivity as a Determinant of Cell Types and Subtypes. Research Square. PMID 37398060 DOI: 10.21203/  0.369
2023 Hawrylycz M, Martone ME, Ascoli GA, Bjaalie JG, Dong HW, Ghosh SS, Gillis J, Hertzano R, Haynor DR, Hof PR, Kim Y, Lein E, Liu Y, Miller JA, Mitra PP, et al. A guide to the BRAIN Initiative Cell Census Network data ecosystem. Plos Biology. 21: e3002133. PMID 37390046 DOI: 10.1371/journal.pbio.3002133  0.51
2023 Mehta K, Goldin RF, Ascoli GA. Circuit analysis of the brain using connectivity-based neuronal classification reveals organization of key communication pathways. Network Neuroscience (Cambridge, Mass.). 7: 269-298. PMID 37339321 DOI: 10.1162/netn_a_00283  0.364
2023 Nanda S, Bhattacharjee S, Cox DN, Ascoli GA. Local Microtubule and F-Actin Distributions Fully Constrain the Spatial Geometry of Sensory Dendritic Arbors. International Journal of Molecular Sciences. 24. PMID 37047715 DOI: 10.3390/ijms24076741  0.356
2023 Nanda S, Bhattacharjee S, Cox DN, Ascoli GA. Local microtubule and F-actin distributions fully determine the spatial geometry of sensory dendritic arbors. Biorxiv : the Preprint Server For Biology. PMID 36909461 DOI: 10.1101/2023.02.24.529978  0.329
2022 Bhattacharjee S, Lottes EN, Nanda S, Golshir A, Patel AA, Ascoli GA, Cox DN. PP2A phosphatase regulates cell-type specific cytoskeletal organization to drive dendrite diversity. Frontiers in Molecular Neuroscience. 15: 926567. PMID 36452406 DOI: 10.3389/fnmol.2022.926567  0.337
2022 Ascoli GA. Cell morphologies in the nervous system: Glia steal the limelight. The Journal of Comparative Neurology. PMID 36316800 DOI: 10.1002/cne.25429  0.409
2022 Liu Y, Wang G, Ascoli GA, Zhou J, Liu L. Neuron Tracing from Light Microscopy Images: Automation, Deep Learning, and Bench Testing. Bioinformatics (Oxford, England). PMID 36303315 DOI: 10.1093/bioinformatics/btac712  0.354
2022 Akram MA, Wei Q, Ascoli GA. Machine learning classification reveals robust morphometric biomarker of glial and neuronal arbors. Journal of Neuroscience Research. PMID 36196621 DOI: 10.1002/jnr.25131  0.393
2022 Ljungquist B, Akram MA, Ascoli GA. Large scale similarity search across digital reconstructions of neural morphology. Neuroscience Research. 181: 39-45. PMID 35580795 DOI: 10.1016/j.neures.2022.05.004  0.338
2022 Moradi K, Aldarraji Z, Luthra M, Madison GP, Ascoli GA. Normalized unitary synaptic signaling of the hippocampus and entorhinal cortex predicted by deep learning of experimental recordings. Communications Biology. 5: 418. PMID 35513471 DOI: 10.1038/s42003-022-03329-5  0.303
2022 Attili SM, Moradi K, Wheeler DW, Ascoli GA. Quantification of neuron types in the rodent hippocampal formation by data mining and numerical optimization. The European Journal of Neuroscience. 55: 1724-1741. PMID 35301768 DOI: 10.1111/ejn.15639  0.669
2022 Jiang S, Wang Y, Liu L, Ding L, Ruan Z, Dong HW, Ascoli GA, Hawrylycz M, Zeng H, Peng H. Petabyte-Scale Multi-Morphometry of Single Neurons for Whole Brains. Neuroinformatics. PMID 35182359 DOI: 10.1007/s12021-022-09569-4  0.413
2022 Poline JB, Kennedy DN, Sommer FT, Ascoli GA, Van Essen DC, Ferguson AR, Grethe JS, Hawrylycz MJ, Thompson PM, Poldrack RA, Ghosh SS, Keator DB, Athey TL, Vogelstein JT, Mayberg HS, et al. Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data. Neuroinformatics. PMID 35061216 DOI: 10.1007/s12021-021-09557-0  0.46
2021 de la Prida LM, Ascoli GA. Explorers of the cells: Toward cross-platform knowledge integration to evaluate neuronal function. Neuron. 109: 3535-3537. PMID 34793702 DOI: 10.1016/j.neuron.2021.10.025  0.314
2021 Mehta K, Goldin RF, Marchette D, Vogelstein JT, Priebe CE, Ascoli GA. Neuronal classification from network connectivity via adjacency spectral embedding. Network Neuroscience (Cambridge, Mass.). 5: 689-710. PMID 34746623 DOI: 10.1162/netn_a_00195  0.34
2021 Bijari K, Valera G, López-Schier H, Ascoli GA. Quantitative neuronal morphometry by supervised and unsupervised learning. Star Protocols. 2: 100867. PMID 34647039 DOI: 10.1016/j.xpro.2021.100867  0.332
2021 Muñoz-Castañeda R, Zingg B, Matho KS, Chen X, Wang Q, Foster NN, Li A, Narasimhan A, Hirokawa KE, Huo B, Bannerjee S, Korobkova L, Park CS, Park YG, Bienkowski MS, ... ... Ascoli GA, et al. Cellular anatomy of the mouse primary motor cortex. Nature. 598: 159-166. PMID 34616071 DOI: 10.1038/s41586-021-03970-w  0.603
2021 Sutton NM, Ascoli GA. Spiking Neural Networks and Hippocampal Function: A Web-Accessible Survey of Simulations, Modeling Methods, and Underlying Theories. Cognitive Systems Research. 70: 80-92. PMID 34504394 DOI: 10.1016/j.cogsys.2021.07.008  0.312
2021 Tecuatl C, Wheeler DW, Ascoli GA. A Method for Estimating the Potential Synaptic Connections Between Axons and Dendrites From 2D Neuronal Images. Bio-Protocol. 11: e4073. PMID 34327270 DOI: 10.21769/BioProtoc.4073  0.687
2021 Nanda S, Bhattacharjee S, Cox DN, Ascoli GA. An imaging analysis protocol to trace, quantify, and model multi-signal neuron morphology. Star Protocols. 2: 100567. PMID 34151294 DOI: 10.1016/j.xpro.2021.100567  0.353
2021 Gao Y, Ascoli GA, Zhao L. BEAN: Interpretable and Efficient Learning With Biologically-Enhanced Artificial Neuronal Assembly Regularization. Frontiers in Neurorobotics. 15: 567482. PMID 34140886 DOI: 10.3389/fnbot.2021.567482  0.35
2021 Akram MA, Ljungquist B, Ascoli GA. Efficient metadata mining of web-accessible neural morphologies. Progress in Biophysics and Molecular Biology. PMID 34022302 DOI: 10.1016/j.pbiomolbio.2021.05.005  0.351
2021 Hintiryan H, Bowman I, Johnson DL, Korobkova L, Zhu M, Khanjani N, Gou L, Gao L, Yamashita S, Bienkowski MS, Garcia L, Foster NN, Benavidez NL, Song MY, Lo D, ... ... Ascoli GA, et al. Connectivity characterization of the mouse basolateral amygdalar complex. Nature Communications. 12: 2859. PMID 34001873 DOI: 10.1038/s41467-021-22915-5  0.317
2021 Sanchez-Aguilera A, Wheeler DW, Jurado-Parras T, Valero M, Nokia MS, Cid E, Fernandez-Lamo I, Sutton N, García-Rincón D, de la Prida LM, Ascoli GA. An update to by integrating single-cell phenotypes with circuit function in vivo. Plos Biology. 19: e3001213. PMID 33956790 DOI: 10.1371/journal.pbio.3001213  0.645
2020 Tecuatl C, Wheeler DW, Sutton N, Ascoli GA. Comprehensive estimates of potential synaptic connections in local circuits of the rodent hippocampal formation by axonal-dendritic overlap. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 33361464 DOI: 10.1523/JNEUROSCI.1193-20.2020  0.692
2020 Attili SM, Mackesey ST, Ascoli GA. Operations Research Methods for Estimating the Population Size of Neuron Types. Annals of Operations Research. 289: 33-50. PMID 33343053 DOI: 10.1007/s10479-020-03542-7  0.441
2020 Yuste R, Hawrylycz M, Aalling N, Aguilar-Valles A, Arendt D, Arnedillo RA, Ascoli GA, Bielza C, Bokharaie V, Bergmann TB, Bystron I, Capogna M, Chang Y, Clemens A, de Kock CPJ, et al. A community-based transcriptomics classification and nomenclature of neocortical cell types. Nature Neuroscience. PMID 32839617 DOI: 10.1038/S41593-020-0685-8  0.345
2020 Venkadesh S, Barreto E, Ascoli GA. Itinerant complexity in networks of intrinsically bursting neurons. Chaos (Woodbury, N.Y.). 30: 061106. PMID 32611128 DOI: 10.1063/5.0010334  0.424
2020 Bijari K, Akram MA, Ascoli GA. An open-source framework for neuroscience metadata management applied to digital reconstructions of neuronal morphology. Brain Informatics. 7: 2. PMID 32219575 DOI: 10.1186/s40708-020-00103-3  0.402
2019 Komendantov AO, Venkadesh S, Rees CL, Wheeler DW, Hamilton DJ, Ascoli GA. Quantitative firing pattern phenotyping of hippocampal neuron types. Scientific Reports. 9: 17915. PMID 31784578 DOI: 10.1038/S41598-019-52611-W  0.697
2019 Venkadesh S, Komendantov AO, Wheeler DW, Hamilton DJ, Ascoli GA. Simple models of quantitative firing phenotypes in hippocampal neurons: Comprehensive coverage of intrinsic diversity. Plos Computational Biology. 15: e1007462. PMID 31658260 DOI: 10.1371/Journal.Pcbi.1007462  0.703
2019 White CM, Rees CL, Wheeler DW, Hamilton DJ, Ascoli GA. Molecular expression profiles of morphologically defined hippocampal neuron types: Empirical evidence and relational inferences. Hippocampus. PMID 31596053 DOI: 10.1002/Hipo.23165  0.706
2019 Moradi K, Ascoli GA. A comprehensive knowledge base of synaptic electrophysiology in the rodent hippocampal formation. Hippocampus. PMID 31472001 DOI: 10.1002/hipo.23148  0.439
2019 Attili SM, Silva MFM, Nguyen TV, Ascoli GA. Cell numbers, distribution, shape, and regional variation throughout the murine hippocampal formation from the adult brain Allen Reference Atlas. Brain Structure & Function. PMID 31444616 DOI: 10.1007/S00429-019-01940-7  0.421
2019 Shepherd GM, Marenco L, Hines ML, Migliore M, McDougal RA, Carnevale NT, Newton AJH, Surles-Zeigler M, Ascoli GA. Neuron Names: A Gene- and Property-Based Name Format, With Special Reference to Cortical Neurons. Frontiers in Neuroanatomy. 13: 25. PMID 30949034 DOI: 10.3389/fnana.2019.00025  0.618
2019 Wang X, Tucciarone J, Jiang S, Yin F, Wang BS, Wang D, Jia Y, Jia X, Li Y, Yang T, Xu Z, Akram MA, Wang Y, Zeng S, Ascoli GA, et al. Genetic Single Neuron Anatomy Reveals Fine Granularity of Cortical Axo-Axonic Cells. Cell Reports. 26: 3145-3159.e5. PMID 30865900 DOI: 10.1016/J.Celrep.2019.02.040  0.481
2018 Venkadesh S, Komendantov AO, Listopad S, Scott EO, De Jong K, Krichmar JL, Ascoli GA. Evolving Simple Models of Diverse Intrinsic Dynamics in Hippocampal Neuron Types. Frontiers in Neuroinformatics. 12: 8. PMID 29593519 DOI: 10.3389/Fninf.2018.00008  0.503
2018 Akram MA, Nanda S, Maraver P, Armañanzas R, Ascoli GA. An open repository for single-cell reconstructions of the brain forest. Scientific Data. 5: 180006. PMID 29485626 DOI: 10.1038/sdata.2018.6  0.456
2018 Nanda S, Chen H, Das R, Bhattacharjee S, Cuntz H, Torben-Nielsen B, Peng H, Cox DN, De Schutter E, Ascoli GA. Design and implementation of multi-signal and time-varying neural reconstructions. Scientific Data. 5: 170207. PMID 29360104 DOI: 10.1038/Sdata.2017.207  0.456
2017 Nanda S, Das R, Bhattacharjee S, Cox DN, Ascoli GA. Morphological determinants of dendritic arborization neurons in Drosophila larva. Brain Structure & Function. PMID 29094302 DOI: 10.1007/S00429-017-1541-9  0.479
2017 Das R, Bhattacharjee S, Patel AA, Harris JM, Bhattacharya S, Letcher JM, Clark SG, Nanda S, Iyer EPR, Ascoli GA, Cox DN. Dendritic Cytoskeletal Architecture Is Modulated by Combinatorial Transcriptional Regulation in Drosophila melanogaster. Genetics. PMID 29025914 DOI: 10.1534/Genetics.117.300393  0.309
2017 Li Y, Wang D, Ascoli GA, Mitra P, Wang Y. Metrics for comparing neuronal tree shapes based on persistent homology. Plos One. 12: e0182184. PMID 28809960 DOI: 10.1371/Journal.Pone.0182184  0.467
2017 Hamilton DJ, White CM, Rees CL, Wheeler DW, Ascoli GA. Molecular fingerprinting of principal neurons in the rodent hippocampus: A neuroinformatics approach. Journal of Pharmaceutical and Biomedical Analysis. PMID 28549853 DOI: 10.1016/J.Jpba.2017.03.062  0.703
2017 Rees CL, White CM, Ascoli GA. Neurochemical Markers in the Mammalian Brain: Structure, Roles in Synaptic Communication, and Pharmacological Relevance. Current Medicinal Chemistry. PMID 28413962 DOI: 10.2174/0929867324666170414163506  0.408
2017 Peng H, Zhou Z, Meijering E, Zhao T, Ascoli GA, Hawrylycz M. Automatic tracing of ultra-volumes of neuronal images. Nature Methods. 14: 332-333. PMID 28362437 DOI: 10.1038/nmeth.4233  0.395
2017 Polavaram S, Ascoli GA. An ontology-based search engine for digital reconstructions of neuronal morphology. Brain Informatics. PMID 28337675 DOI: 10.1007/s40708-017-0062-x  0.517
2016 Rees CL, Moradi K, Ascoli GA. Weighing the Evidence in Peters' Rule: Does Neuronal Morphology Predict Connectivity? Trends in Neurosciences. PMID 28041634 DOI: 10.1016/j.tins.2016.11.007  0.485
2016 Rees CL, Wheeler DW, Hamilton DJ, White CM, Komendantov AO, Ascoli GA. Graph Theoretic and Motif Analyses of the Hippocampal Neuron Type Potential Connectome. Eneuro. 3. PMID 27896314 DOI: 10.1523/ENEURO.0205-16.2016  0.678
2016 Hamilton DJ, Wheeler DW, White CM, Rees CL, Komendantov AO, Bergamino M, Ascoli GA. Name-calling in the hippocampus (and beyond): coming to terms with neuron types and properties. Brain Informatics. PMID 27747821 DOI: 10.1007/S40708-016-0053-3  0.81
2016 Ascoli GA, Wheeler DW. In search of a periodic table of the neurons: Axonal-dendritic circuitry as the organizing principle: Patterns of axons and dendrites within distinct anatomical parcels provide the blueprint for circuit-based neuronal classification. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 27516119 DOI: 10.1002/Bies.201600067  0.694
2015 Ferrante M, Ascoli GA. Distinct and synergistic feedforward inhibition of pyramidal cells by basket and bistratified interneurons. Frontiers in Cellular Neuroscience. 9: 439. PMID 26594151 DOI: 10.3389/Fncel.2015.00439  0.601
2015 Ascoli GA. Sharing Neuron Data: Carrots, Sticks, and Digital Records. Plos Biology. 13: e1002275. PMID 26447712 DOI: 10.1371/journal.pbio.1002275  0.385
2015 Wheeler DW, White CM, Rees CL, Komendantov AO, Hamilton DJ, Ascoli GA. a knowledge base of neuron types in the rodent hippocampus. Elife. 4. PMID 26402459 DOI: 10.7554/Elife.09960  0.716
2015 Ascoli GA. On Synaptic Circuits, Memory, and Kumquats. The New England Journal of Medicine. 373: 1170-2. PMID 26376141 DOI: 10.1056/NEJMcibr1509692  0.38
2015 Peng H, Hawrylycz M, Roskams J, Hill S, Spruston N, Meijering E, Ascoli GA. BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images. Neuron. 87: 252-6. PMID 26182412 DOI: 10.1016/J.Neuron.2015.06.036  0.479
2015 Gillette TA, Ascoli GA. Topological characterization of neuronal arbor morphology via sequence representation: I--motif analysis. Bmc Bioinformatics. 16: 216. PMID 26156313 DOI: 10.1186/s12859-015-0604-2  0.466
2015 Gillette TA, Hosseini P, Ascoli GA. Topological characterization of neuronal arbor morphology via sequence representation: II--global alignment. Bmc Bioinformatics. 16: 209. PMID 26141505 DOI: 10.1186/S12859-015-0605-1  0.461
2015 Peng H, Meijering E, Ascoli GA. From DIADEM to BigNeuron. Neuroinformatics. 13: 259-60. PMID 25920534 DOI: 10.1007/s12021-015-9270-9  0.509
2015 Mainetti M, Ascoli GA. A neural mechanism for background information-gated learning based on axonal-dendritic overlaps. Plos Computational Biology. 11: e1004155. PMID 25767887 DOI: 10.1371/journal.pcbi.1004155  0.436
2015 Armañanzas R, Ascoli GA. Towards the automatic classification of neurons. Trends in Neurosciences. 38: 307-18. PMID 25765323 DOI: 10.1016/j.tins.2015.02.004  0.439
2015 Parekh R, Armañanzas R, Ascoli GA. The importance of metadata to assess information content in digital reconstructions of neuronal morphology. Cell and Tissue Research. 360: 121-7. PMID 25653123 DOI: 10.1007/S00441-014-2103-6  0.664
2015 Nanda S, Allaham MM, Bergamino M, Polavaram S, Armañanzas R, Ascoli GA, Parekh R. Doubling up on the fly: NeuroMorpho.Org Meets Big Data. Neuroinformatics. 13: 127-9. PMID 25576225 DOI: 10.1007/S12021-014-9257-Y  0.778
2015 Parekh R, Ascoli GA. Quantitative investigations of axonal and dendritic arbors: development, structure, function, and pathology. The Neuroscientist : a Review Journal Bringing Neurobiology, Neurology and Psychiatry. 21: 241-54. PMID 24972604 DOI: 10.1177/1073858414540216  0.682
2015 Wheeler DW, White CM, Rees CL, Komendantov AO, Hamilton DJ, Ascoli GA. Author response: a knowledge base of neuron types in the rodent hippocampus Elife. DOI: 10.7554/Elife.09960.014  0.655
2015 Peng H, Hawrylycz M, Roskams J, Hill S, Spruston N, Meijering E, Ascoli GA. BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images Neuron. 87: 252-256. DOI: 10.1016/j.neuron.2015.06.036  0.375
2014 Polavaram S, Gillette TA, Parekh R, Ascoli GA. Statistical analysis and data mining of digital reconstructions of dendritic morphologies. Frontiers in Neuroanatomy. 8: 138. PMID 25538569 DOI: 10.3389/Fnana.2014.00138  0.67
2014 Mut F, Wright S, Ascoli GA, Cebral JR. Morphometric, geographic, and territorial characterization of brain arterial trees. International Journal For Numerical Methods in Biomedical Engineering. 30: 755-66. PMID 24470176 DOI: 10.1002/Cnm.2627  0.537
2013 Martone ME, Ascoli GA. Connecting connectomes. Neuroinformatics. 11: 389-92. PMID 24096724 DOI: 10.1007/s12021-013-9207-0  0.454
2013 Sugihara I, Brown KM, Ascoli GA. New insights on vertebrate olivo-cerebellar climbing fibers from computerized morphological reconstructions. Bioarchitecture. 3: 38-41. PMID 23756373 DOI: 10.4161/bioa.24062  0.66
2013 Wright SN, Kochunov P, Mut F, Bergamino M, Brown KM, Mazziotta JC, Toga AW, Cebral JR, Ascoli GA. Digital reconstruction and morphometric analysis of human brain arterial vasculature from magnetic resonance angiography. Neuroimage. 82: 170-81. PMID 23727319 DOI: 10.1016/J.Neuroimage.2013.05.089  0.773
2013 Parekh R, Ascoli GA. Neuronal morphology goes digital: a research hub for cellular and system neuroscience. Neuron. 77: 1017-38. PMID 23522039 DOI: 10.1016/J.Neuron.2013.03.008  0.661
2013 DeFelipe J, López-Cruz PL, Benavides-Piccione R, Bielza C, Larrañaga P, Anderson S, Burkhalter A, Cauli B, Fairén A, Feldmeyer D, Fishell G, Fitzpatrick D, Freund TF, González-Burgos G, Hestrin S, ... ... Ascoli GA, et al. New insights into the classification and nomenclature of cortical GABAergic interneurons. Nature Reviews. Neuroscience. 14: 202-16. PMID 23385869 DOI: 10.1038/Nrn3444  0.442
2013 Ferrante M, Migliore M, Ascoli GA. Functional impact of dendritic branch-point morphology. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 2156-65. PMID 23365251 DOI: 10.1523/Jneurosci.3495-12.2013  0.715
2013 Ascoli GA. Global neuroscience: distributing the management of brain knowledge worldwide. Neuroinformatics. 11: 1-3. PMID 23224666 DOI: 10.1007/s12021-012-9173-y  0.411
2013 Berzhanskaya J, Chernyy N, Gluckman BJ, Schiff SJ, Ascoli GA. Modulation of hippocampal rhythms by subthreshold electric fields and network topology. Journal of Computational Neuroscience. 34: 369-89. PMID 23053863 DOI: 10.1007/s10827-012-0426-4  0.588
2013 Parekh R, Ascoli GA. Errata to Neuronal Morphology Goes Digital: A Research Hub for Cellular and System Neuroscience [Imaging calcium in neurons. Neuron 73, (2012) 862-885] Neuron. 78: 206. DOI: 10.1016/j.neuron.2013.03.015  0.584
2012 Brown KM, Sugihara I, Shinoda Y, Ascoli GA. Digital morphometry of rat cerebellar climbing fibers reveals distinct branch and bouton types. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 14670-84. PMID 23077053 DOI: 10.1523/Jneurosci.2018-12.2012  0.614
2012 Hamilton DJ, Shepherd GM, Martone ME, Ascoli GA. An ontological approach to describing neurons and their relationships. Frontiers in Neuroinformatics. 6: 15. PMID 22557965 DOI: 10.3389/Fninf.2012.00015  0.638
2012 Halavi M, Hamilton KA, Parekh R, Ascoli GA. Digital reconstructions of neuronal morphology: three decades of research trends. Frontiers in Neuroscience. 6: 49. PMID 22536169 DOI: 10.3389/Fnins.2012.00049  0.83
2012 Myatt DR, Hadlington T, Ascoli GA, Nasuto SJ. Neuromantic - from semi-manual to semi-automatic reconstruction of neuron morphology. Frontiers in Neuroinformatics. 6: 4. PMID 22438842 DOI: 10.3389/fninf.2012.00004  0.455
2012 Ascoli GA. Twenty questions for neuroscience metadata. Neuroinformatics. 10: 115-7. PMID 22354746 DOI: 10.1007/s12021-012-9143-4  0.351
2012 Ascoli GA. Potential connectomics complements the endeavour of 'no synapse left behind' in the cortex. The Journal of Physiology. 590: 651-2. PMID 22344980 DOI: 10.1113/jphysiol.2011.225664  0.492
2012 Ropireddy D, Bachus SE, Ascoli GA. Non-homogeneous stereological properties of the rat hippocampus from high-resolution 3D serial reconstruction of thin histological sections. Neuroscience. 205: 91-111. PMID 22245503 DOI: 10.1016/J.Neuroscience.2011.12.055  0.805
2011 Ropireddy D, Ascoli GA. Potential Synaptic Connectivity of Different Neurons onto Pyramidal Cells in a 3D Reconstruction of the Rat Hippocampus. Frontiers in Neuroinformatics. 5: 5. PMID 21779242 DOI: 10.3389/Fninf.2011.00005  0.822
2011 Gillette TA, Brown KM, Ascoli GA. The DIADEM metric: comparing multiple reconstructions of the same neuron. Neuroinformatics. 9: 233-45. PMID 21519813 DOI: 10.1007/S12021-011-9117-Y  0.692
2011 Baker JL, Ascoli GA. Tracking the source of quantitative knowledge in neuroscience: a neuroinformatics role for computational models. Neuroinformatics. 9: 1-2. PMID 21301997 DOI: 10.1007/S12021-011-9100-7  0.531
2011 Brown KM, Barrionuevo G, Canty AJ, De Paola V, Hirsch JA, Jefferis GS, Lu J, Snippe M, Sugihara I, Ascoli GA. The DIADEM data sets: representative light microscopy images of neuronal morphology to advance automation of digital reconstructions. Neuroinformatics. 9: 143-57. PMID 21249531 DOI: 10.1007/S12021-010-9095-5  0.674
2011 Perez-Rosello T, Baker JL, Ferrante M, Iyengar S, Ascoli GA, Barrionuevo G. Passive and active shaping of unitary responses from associational/commissural and perforant path synapses in hippocampal CA3 pyramidal cells. Journal of Computational Neuroscience. 31: 159-82. PMID 21207127 DOI: 10.1007/S10827-010-0303-Y  0.647
2011 Baker JL, Perez-Rosello T, Migliore M, Barrionuevo G, Ascoli GA. A computer model of unitary responses from associational/commissural and perforant path synapses in hippocampal CA3 pyramidal cells. Journal of Computational Neuroscience. 31: 137-58. PMID 21191641 DOI: 10.1007/S10827-010-0304-X  0.649
2011 Ropireddy D, Scorcioni R, Lasher B, Buzsáki G, Ascoli GA. Axonal morphometry of hippocampal pyramidal neurons semi-automatically reconstructed after in vivo labeling in different CA3 locations. Brain Structure & Function. 216: 1-15. PMID 21128083 DOI: 10.1007/S00429-010-0291-8  0.792
2011 Donohue DE, Ascoli GA. Automated reconstruction of neuronal morphology: an overview. Brain Research Reviews. 67: 94-102. PMID 21118703 DOI: 10.1016/J.Brainresrev.2010.11.003  0.779
2011 Gillette TA, Brown KM, Svoboda K, Liu Y, Ascoli GA. DIADEMchallenge.Org: A compendium of resources fostering the continuous development of automated neuronal reconstruction Neuroinformatics. 9: 303-304. DOI: 10.1007/S12021-011-9104-3  0.643
2011 Baker JL, Perez-Rosello T, Migliore M, Barrionuevo G, Ascoli GA. Erratum to: Journal of Computational Neuroscience, DOI 10.1007/s10827-010-0303-y and DOI 10.1007/s10827-010-0304-x Journal of Computational Neuroscience. 31: 183-183. DOI: 10.1007/S10827-011-0364-6  0.456
2010 Ascoli GA, Gasparini S, Medinilla V, Migliore M. Local control of postinhibitory rebound spiking in CA1 pyramidal neuron dendrites. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 6434-42. PMID 20445069 DOI: 10.1523/JNEUROSCI.4066-09.2010  0.615
2009 Ferrante M, Migliore M, Ascoli GA. Feed-forward inhibition as a buffer of the neuronal input-output relation. Proceedings of the National Academy of Sciences of the United States of America. 106: 18004-9. PMID 19815518 DOI: 10.1073/Pnas.0904784106  0.694
2009 Ascoli GA, Brown KM, Calixto E, Card JP, Galván EJ, Perez-Rosello T, Barrionuevo G. Quantitative morphometry of electrophysiologically identified CA3b interneurons reveals robust local geometry and distinct cell classes. The Journal of Comparative Neurology. 515: 677-95. PMID 19496174 DOI: 10.1002/Cne.22082  0.65
2009 Hemond P, Migliore M, Ascoli GA, Jaffe DB. The membrane response of hippocampal CA3b pyramidal neurons near rest: Heterogeneity of passive properties and the contribution of hyperpolarization-activated currents. Neuroscience. 160: 359-70. PMID 19232379 DOI: 10.1016/j.neuroscience.2009.01.082  0.615
2009 Komendantov AO, Ascoli GA. Dendritic excitability and neuronal morphology as determinants of synaptic efficacy. Journal of Neurophysiology. 101: 1847-66. PMID 19176614 DOI: 10.1152/jn.01235.2007  0.476
2009 Mut F, Wright S, Putman C, Ascoli G, Cebral J. Image-based modeling of hemodynamics in cerebral arterial trees Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7262. DOI: 10.1117/12.810149  0.542
2008 Marenco L, Ascoli GA, Martone ME, Shepherd GM, Miller PL. The NIF LinkOut broker: a web resource to facilitate federated data integration using NCBI identifiers. Neuroinformatics. 6: 219-27. PMID 18975149 DOI: 10.1007/S12021-008-9025-Y  0.537
2008 Bug WJ, Ascoli GA, Grethe JS, Gupta A, Fennema-Notestine C, Laird AR, Larson SD, Rubin D, Shepherd GM, Turner JA, Martone ME. The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience. Neuroinformatics. 6: 175-94. PMID 18975148 DOI: 10.1007/S12021-008-9032-Z  0.545
2008 Halavi M, Polavaram S, Donohue DE, Hamilton G, Hoyt J, Smith KP, Ascoli GA. NeuroMorpho.Org implementation of digital neuroscience: dense coverage and integration with the NIF. Neuroinformatics. 6: 241-52. PMID 18949582 DOI: 10.1007/S12021-008-9030-1  0.803
2008 Gardner D, Akil H, Ascoli GA, Bowden DM, Bug W, Donohue DE, Goldberg DH, Grafstein B, Grethe JS, Gupta A, Halavi M, Kennedy DN, Marenco L, Martone ME, Miller PL, et al. The neuroscience information framework: a data and knowledge environment for neuroscience. Neuroinformatics. 6: 149-60. PMID 18946742 DOI: 10.1007/S12021-008-9024-Z  0.762
2008 Ferrante M, Blackwell KT, Migliore M, Ascoli GA. Computational models of neuronal biophysics and the characterization of potential neuropharmacological targets. Current Medicinal Chemistry. 15: 2456-71. PMID 18855673 DOI: 10.2174/092986708785909094  0.663
2008 Brown KM, Gillette TA, Ascoli GA. Quantifying neuronal size: summing up trees and splitting the branch difference. Seminars in Cell & Developmental Biology. 19: 485-93. PMID 18771743 DOI: 10.1016/J.Semcdb.2008.08.005  0.676
2008 Scorcioni R, Hamilton DJ, Ascoli GA. Self-sustaining non-repetitive activity in a large scale neuronal-level model of the hippocampal circuit. Neural Networks : the Official Journal of the International Neural Network Society. 21: 1153-63. PMID 18595658 DOI: 10.1186/1471-2202-9-S1-P62  0.806
2008 Ascoli GA, Alonso-Nanclares L, Anderson SA, Barrionuevo G, Benavides-Piccione R, Burkhalter A, Buzsáki G, Cauli B, Defelipe J, Fairén A, Feldmeyer D, Fishell G, Fregnac Y, Freund TF, et al. Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex. Nature Reviews. Neuroscience. 9: 557-68. PMID 18568015 DOI: 10.1038/Nrn2402  0.423
2008 Donohue DE, Ascoli GA. A comparative computer simulation of dendritic morphology. Plos Computational Biology. 4: e1000089. PMID 18483611 DOI: 10.1371/Journal.Pcbi.1000089  0.776
2008 Scorcioni R, Polavaram S, Ascoli GA. L-Measure: a web-accessible tool for the analysis, comparison and search of digital reconstructions of neuronal morphologies. Nature Protocols. 3: 866-76. PMID 18451794 DOI: 10.1038/Nprot.2008.51  0.811
2008 Scorcioni R, Wright SN, Patrick Card J, Ascoli GA, Barrionuevo G. Point Analysis in Java applied to histological images of the perforant pathway: a user's account. Neuroinformatics. 6: 63-7. PMID 18350259 DOI: 10.1007/S12021-008-9011-4  0.768
2008 Li X, Ascoli GA. Effects of synaptic synchrony on the neuronal input-output relationship. Neural Computation. 20: 1717-31. PMID 18254692 DOI: 10.1162/neco.2008.10-06-385  0.386
2008 Ascoli GA. Neuroinformatics grand challenges. Neuroinformatics. 6: 1-3. PMID 18253866 DOI: 10.1007/s12021-008-9010-5  0.458
2008 Hemond P, Epstein D, Boley A, Migliore M, Ascoli GA, Jaffe DB. Distinct classes of pyramidal cells exhibit mutually exclusive firing patterns in hippocampal area CA3b. Hippocampus. 18: 411-24. PMID 18189311 DOI: 10.1002/Hipo.20404  0.582
2008 Berzhanskaya J, Schiff SJ, Ascoli GA. Electric field modulation of theta and gamma rhythms: probe into network connectivity Bmc Neuroscience. 9. DOI: 10.1186/1471-2202-9-S1-P8  0.603
2008 Ropireddy D, Bachus SE, Scorcioni R, Ascoli GA. Computational Neuroanatomy of the rat Hippocampus: Implications and Applications to Epilepsy Computational Neuroscience in Epilepsy. 71-85. DOI: 10.1016/B978-012373649-9.50009-0  0.732
2007 Ascoli GA. Successes and rewards in sharing digital reconstructions of neuronal morphology. Neuroinformatics. 5: 154-60. PMID 17917126 DOI: 10.1007/s12021-007-0010-7  0.529
2007 Liu Y, Ascoli GA. Value added by data sharing: long-term potentiation of neuroscience research. A commentary on the 2007 SfN Satellite Symposium on data sharing. Neuroinformatics. 5: 143-5. PMID 17917124 DOI: 10.1007/s12021-007-0009-0  0.366
2007 Ascoli GA, Donohue DE, Halavi M. NeuroMorpho.Org: a central resource for neuronal morphologies. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 27: 9247-51. PMID 17728438 DOI: 10.1523/Jneurosci.2055-07.2007  0.79
2007 Duque A, Tepper JM, Detari L, Ascoli GA, Zaborszky L. Morphological characterization of electrophysiologically and immunohistochemically identified basal forebrain cholinergic and neuropeptide Y-containing neurons. Brain Structure & Function. 212: 55-73. PMID 17717698 DOI: 10.1007/S00429-007-0143-3  0.485
2006 Krichmar JL, Velasquez D, Ascoli GA. Effects of beta-catenin on dendritic morphology and simulated firing patterns in cultured hippocampal neurons. The Biological Bulletin. 211: 31-43. PMID 16946239 DOI: 10.2307/4134575  0.41
2006 Li X, Ascoli GA. Computational simulation of the input-output relationship in hippocampal pyramidal cells. Journal of Computational Neuroscience. 21: 191-209. PMID 16871350 DOI: 10.1007/s10827-006-8797-z  0.464
2006 Ascoli GA. Mobilizing the base of neuroscience data: the case of neuronal morphologies. Nature Reviews. Neuroscience. 7: 318-24. PMID 16552417 DOI: 10.1038/nrn1885  0.427
2006 Samsonovich AV, Ascoli GA. Morphological homeostasis in cortical dendrites. Proceedings of the National Academy of Sciences of the United States of America. 103: 1569-74. PMID 16418293 DOI: 10.1073/pnas.0510057103  0.513
2006 Ascoli GA, Scorcioni R. Neuron and network modeling Neuroanatomical Tract-Tracing 3: Molecules, Neurons, and Systems. 604-630. DOI: 10.1007/0-387-28942-9_19  0.797
2005 Migliore M, Ferrante M, Ascoli GA. Signal propagation in oblique dendrites of CA1 pyramidal cells. Journal of Neurophysiology. 94: 4145-55. PMID 16293591 DOI: 10.1152/Jn.00521.2005  0.703
2005 Brown KM, Donohue DE, D'Alessandro G, Ascoli GA. A cross-platform freeware tool for digital reconstruction of neuronal arborizations from image stacks. Neuroinformatics. 3: 343-60. PMID 16284416 DOI: 10.1385/Ni:3:4:343  0.832
2005 Donohue DE, Ascoli GA. Local diameter fully constrains dendritic size in basal but not apical trees of CA1 pyramidal neurons. Journal of Computational Neuroscience. 19: 223-38. PMID 16133820 DOI: 10.1007/S10827-005-1850-5  0.776
2005 Li Y, Brewer D, Burke RE, Ascoli GA. Developmental changes in spinal motoneuron dendrites in neonatal mice. The Journal of Comparative Neurology. 483: 304-17. PMID 15682391 DOI: 10.1002/cne.20438  0.308
2005 Ascoli GA, Atkeson JC. Incorporating anatomically realistic cellular-level connectivity in neural network models of the rat hippocampus. Bio Systems. 79: 173-81. PMID 15649602 DOI: 10.1016/j.biosystems.2004.09.024  0.458
2005 Samsonovich AV, Ascoli GA. Statistical determinants of dendritic morphology in hippocampal pyramidal neurons: A hidden Markov model. Hippocampus. 15: 166-83. PMID 15390156 DOI: 10.1002/hipo.20041  0.467
2005 Scorcioni R, Ascoli GA. Algorithmic reconstruction of complete axonal arborizations in rat hippocampal neurons Neurocomputing. 65: 15-22. DOI: 10.1016/J.Neucom.2004.10.105  0.812
2005 Samsonovich AV, Ascoli GA. Algorithmic description of hippocampal granule cell dendritic morphology Neurocomputing. 65: 253-260. DOI: 10.1016/j.neucom.2004.10.017  0.439
2004 Scorcioni R, Lazarewicz MT, Ascoli GA. Quantitative morphometry of hippocampal pyramidal cells: differences between anatomical classes and reconstructing laboratories. The Journal of Comparative Neurology. 473: 177-93. PMID 15101088 DOI: 10.1002/Cne.20067  0.81
2003 Ascoli GA. From data to knowledge. Neuroinformatics. 1: 145-7. PMID 15046237 DOI: 10.1007/s12021-003-0001-2  0.458
2003 Samsonovich AV, Ascoli GA. Statistical morphological analysis of hippocampal principal neurons indicates cell-specific repulsion of dendrites from their own cell. Journal of Neuroscience Research. 71: 173-87. PMID 12503080 DOI: 10.1002/jnr.10475  0.504
2002 Lazarewicz MT, Migliore M, Ascoli GA. A new bursting model of CA3 pyramidal cell physiology suggests multiple locations for spike initiation. Bio Systems. 67: 129-37. PMID 12459292 DOI: 10.1016/S0303-2647(02)00071-0  0.806
2002 Ascoli GA. Neuroanatomical algorithms for dendritic modelling. Network (Bristol, England). 13: 247-60. PMID 12222813 DOI: 10.1088/0954-898X/13/3/301  0.438
2002 Krichmar JL, Nasuto SJ, Scorcioni R, Washington SD, Ascoli GA. Effects of dendritic morphology on CA3 pyramidal cell electrophysiology: a simulation study. Brain Research. 941: 11-28. PMID 12031543 DOI: 10.1016/S0006-8993(02)02488-5  0.811
2002 Scorcioni R, Bouteiller JM, Ascoli GA. A real-scale anatomical model of the dentate gyrus based on single cell reconstructions and 3D rendering of a brain atlas Neurocomputing. 44: 629-634. DOI: 10.1016/S0925-2312(02)00450-2  0.785
2001 Ascoli GA, Krichmar JL, Scorcioni R, Nasuto SJ, Senft SL. Computer generation and quantitative morphometric analysis of virtual neurons. Anatomy and Embryology. 204: 283-301. PMID 11720234 DOI: 10.1007/S004290100201  0.817
2001 Ascoli GA, Krichmar JL, Nasuto SJ, Senft SL. Generation, description and storage of dendritic morphology data. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 356: 1131-45. PMID 11545695 DOI: 10.1098/Rstb.2001.0905  0.516
2001 Nasuto SJ, Knape RM, Krichmar JL, Ascoli GA. Relation between neuronal morphology and electrophysiology in the Kainate lesion model of Alzheimer's disease Neurocomputing. 38: 1477-1487. DOI: 10.1016/S0925-2312(01)00507-0  0.426
2001 Scorcioni R, Ascoli GA. Algorithmic extraction of morphological statistics from electronic archives of neuroanatomy Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2084: 30-37.  0.73
2000 Ascoli GA, Krichmar JL. L-neuron: A modeling tool for the efficient generation and parsimonious description of dendritic morphology Neurocomputing. 32: 1003-1011. DOI: 10.1016/S0925-2312(00)00272-1  0.457
2000 Washington SD, Ascoli GA, Krichmar JL. A statistical analysis of dendritic morphology's effect on neuron electrophysiology of CA3 pyramidal cells Neurocomputing. 32: 261-269. DOI: 10.1016/S0925-2312(00)00173-9  0.471
1999 Ascoli GA. Progress and perspectives in computational neuroanatomy. The Anatomical Record. 257: 195-207. PMID 10620749 DOI: 10.1002/(SICI)1097-0185(19991215)257:6<195::AID-AR5>3.0.CO;2-H  0.493
1998 Ascoli GA, Pergami P, Luu KX, Alkon DL, Bramanti E, Bertucci C, Di Bari L, Salvadori P. Use of CD and FT-IR to determine the secondary structure of purified proteins in the low-microgram range. Enantiomer. 3: 371-81. PMID 9861703  0.382
1997 Ascoli GA, Luu KX, Olds JL, Nelson TJ, Gusev PA, Bertucci C, Bramanti E, Raffaelli A, Salvadori P, Alkon DL. Secondary structure and Ca2+-induced conformational change of calexcitin, a learning-associated protein. The Journal of Biological Chemistry. 272: 24771-9. PMID 9312073 DOI: 10.1074/Jbc.272.40.24771  0.66
1997 Ascoli GA, Goldin RF. Coordinate systems for dendritic spines: A somatocentric approach Complexity. 2: 40-48. DOI: 10.1002/(SICI)1099-0526(199703/04)2:4<40::AID-CPLX9>3.0.CO;2-Z  0.411
1997 Krichmar JL, Ascoli GA, Hunter L, Olds JL. A model of cerebellar saccadie motor learning using qualitative reasoning Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1240: 133-145.  0.484
1996 Nelson TJ, Cavallaro S, Yi CL, McPhie D, Schreurs BG, Gusev PA, Favit A, Zohar O, Kim J, Beushausen S, Ascoli G, Olds J, Neve R, Alkon DL. Calexcitin: a signaling protein that binds calcium and GTP, inhibits potassium channels, and enhances membrane excitability. Proceedings of the National Academy of Sciences of the United States of America. 93: 13808-13. PMID 8943017 DOI: 10.1073/Pnas.93.24.13808  0.668
1995 Olds JL, Favit A, Nelson T, Ascoli G, Gerstein A, Cameron M, Cameron L, Lester DS, Rakow T, De Barry J. Imaging protein kinase C activation in living sea urchin eggs after fertilization. Developmental Biology. 172: 675-82. PMID 8612981 DOI: 10.1006/Dbio.1995.8060  0.557
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