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Sriram Kosuri - Publications

Affiliations: 
Chemistry University of California, Los Angeles, Los Angeles, CA 
Area:
Biochemistry, Systems Biology and Biological Regulation, Synthetic Biology, Molecular Biology, Genomic
Website:
https://bioscience.ucla.edu/people/sriram-kosuri/
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Boldridge WC, Ljubetič A, Kim H, Lubock N, Szilágyi D, Lee J, Brodnik A, Jerala R, Kosuri S. A multiplexed bacterial two-hybrid for rapid characterization of protein-protein interactions and iterative protein design. Nature Communications. 14: 4636. PMID 37532706 DOI: 10.1038/s41467-023-38697-x  0.768
2021 Srivatsan S, Heidl S, Pfau B, Martin BK, Han PD, Zhong W, van Raay K, McDermot E, Opsahl J, Gamboa L, Smith N, Truong M, Cho S, Barrow KA, Rich LM, ... ... Kosuri S, et al. SwabExpress: An end-to-end protocol for extraction-free covid-19 testing. Clinical Chemistry. PMID 34286830 DOI: 10.1093/clinchem/hvab132  0.436
2021 Bloom JS, Sathe L, Munugala C, Jones EM, Gasperini M, Lubock NB, Yarza F, Thompson EM, Kovary KM, Park J, Marquette D, Kay S, Lucas M, Love T, Sina Booeshaghi A, ... ... Kosuri S, et al. Massively scaled-up testing for SARS-CoV-2 RNA via next-generation sequencing of pooled and barcoded nasal and saliva samples. Nature Biomedical Engineering. PMID 34211145 DOI: 10.1038/s41551-021-00754-5  0.759
2020 Renganaath K, Cheung R, Day L, Kosuri S, Kruglyak L, Albert FW. Systematic identification of -regulatory variants that cause gene expression differences in a yeast cross. Elife. 9. PMID 33179598 DOI: 10.7554/eLife.62669  0.324
2020 Jones EM, Lubock NB, Venkatakrishnan AJ, Wang J, Tseng AM, Paggi JM, Latorraca NR, Cancilla D, Satyadi M, Davis JE, Babu MM, Dror RO, Kosuri S. Structural and functional characterization of G protein-coupled receptors with deep mutational scanning. Elife. 9. PMID 33084570 DOI: 10.7554/eLife.54895  0.746
2020 Bloom JS, Jones EM, Gasperini M, Lubock NB, Sathe L, Munugala C, Booeshaghi AS, Brandenberg OF, Guo L, Boocock J, Simpkins SW, Lin I, LaPierre N, Hong D, Zhang Y, ... ... Kosuri S, et al. Swab-Seq: A high-throughput platform for massively scaled up SARS-CoV-2 testing. Medrxiv : the Preprint Server For Health Sciences. PMID 32909008 DOI: 10.1101/2020.08.04.20167874  0.767
2020 Sidore AM, Plesa C, Samson JA, Lubock NB, Kosuri S. DropSynth 2.0: high-fidelity multiplexed gene synthesis in emulsions. Nucleic Acids Research. PMID 32692349 DOI: 10.1093/Nar/Gkaa600  0.768
2020 Davis JE, Insigne KD, Jones EM, Hastings QA, Boldridge WC, Kosuri S. Dissection of c-AMP Response Element Architecture by Using Genomic and Episomal Massively Parallel Reporter Assays. Cell Systems. PMID 32603702 DOI: 10.1016/J.Cels.2020.05.011  0.686
2020 Srivatsan S, Han PD, van Raay K, Wolf CR, McCulloch DJ, Kim AE, Brandstetter E, Martin B, Gehring J, Chen W, Kosuri S, Konnick EQ, Lockwood CM, Rieder MJ, et al. Preliminary support for a "dry swab, extraction free" protocol for SARS-CoV-2 testing via RT-qPCR. Biorxiv : the Preprint Server For Biology. PMID 32511368 DOI: 10.1101/2020.04.22.056283  0.477
2019 Jones EM, Jajoo R, Cancilla D, Lubock NB, Wang J, Satyadi M, Cheung R, de March C, Bloom JS, Matsunami H, Kosuri S. A Scalable, Multiplexed Assay for Decoding GPCR-Ligand Interactions with RNA Sequencing. Cell Systems. PMID 30904378 DOI: 10.1016/J.Cels.2019.02.009  0.75
2018 Cheung R, Insigne KD, Yao D, Burghard CP, Wang J, Hsiao YE, Jones EM, Goodman DB, Xiao X, Kosuri S. A Multiplexed Assay for Exon Recognition Reveals that an Unappreciated Fraction of Rare Genetic Variants Cause Large-Effect Splicing Disruptions. Molecular Cell. PMID 30503770 DOI: 10.1016/J.Molcel.2018.10.037  0.766
2018 Johns NI, Gomes ALC, Yim SS, Yang A, Blazejewski T, Smillie CS, Smith MB, Alm EJ, Kosuri S, Wang HH. Metagenomic mining of regulatory elements enables programmable species-selective gene expression. Nature Methods. 15: 323-329. PMID 30052624 DOI: 10.1038/Nmeth.4633  0.609
2018 Sadhu MJ, Bloom JS, Day L, Siegel JJ, Kosuri S, Kruglyak L. Highly parallel genome variant engineering with CRISPR-Cas9. Nature Genetics. 50: 510-514. PMID 29632376 DOI: 10.1038/S41588-018-0087-Y  0.486
2018 Urtecho G, Tripp AD, Insigne K, Kim H, Kosuri S. Systematic Dissection of Sequence Elements Controlling σ70 Promoters Using a Genomically-Encoded Multiplexed Reporter Assay in E. coli. Biochemistry. PMID 29388765 DOI: 10.1021/Acs.Biochem.7B01069  0.406
2018 Plesa C, Sidore AM, Lubock NB, Zhang D, Kosuri S. Multiplexed gene synthesis in emulsions for exploring protein functional landscapes. Science (New York, N.Y.). PMID 29301959 DOI: 10.1126/Science.Aao5167  0.765
2017 Lubock NB, Zhang D, Sidore AM, Church GM, Kosuri S. A systematic comparison of error correction enzymes by next-generation sequencing. Nucleic Acids Research. 45: 9206-9217. PMID 28911123 DOI: 10.1093/Nar/Gkx691  0.768
2017 Lubock NB, Kosuri S. Genetic engineering: Lassoing genomic libraries Nature Biomedical Engineering. 1. DOI: 10.1038/S41551-017-0098  0.391
2016 Taylor ND, Garruss AS, Moretti R, Chan S, Arbing MA, Cascio D, Rogers JK, Isaacs FJ, Kosuri S, Baker D, Fields S, Church GM, Raman S. Engineering an allosteric transcription factor to respond to new ligands. Nature Methods. 13: 177-83. PMID 26689263 DOI: 10.1038/Nmeth.3696  0.756
2015 Bonde MT, Kosuri S, Genee HJ, Sarup-Lytzen K, Church GM, Sommer MO, Wang HH. Direct mutagenesis of thousands of genomic targets using microarray-derived oligonucleotides. Acs Synthetic Biology. 4: 17-22. PMID 24856730 DOI: 10.1021/Sb5001565  0.771
2014 Kosuri S, Church GM. Large-scale de novo DNA synthesis: technologies and applications. Nature Methods. 11: 499-507. PMID 24781323 DOI: 10.1038/Nmeth.2918  0.516
2013 Lajoie MJ, Kosuri S, Mosberg JA, Gregg CJ, Zhang D, Church GM. Probing the limits of genetic recoding in essential genes. Science (New York, N.Y.). 342: 361-3. PMID 24136967 DOI: 10.1126/Science.1241460  0.761
2013 Goodman DB, Church GM, Kosuri S. Causes and effects of N-terminal codon bias in bacterial genes. Science (New York, N.Y.). 342: 475-9. PMID 24072823 DOI: 10.1126/Science.1241934  0.705
2013 Kosuri S, Goodman DB, Cambray G, Mutalik VK, Gao Y, Arkin AP, Endy D, Church GM. Composability of regulatory sequences controlling transcription and translation in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 110: 14024-9. PMID 23924614 DOI: 10.1073/Pnas.1301301110  0.784
2013 Mali P, Aach J, Stranges PB, Esvelt KM, Moosburner M, Kosuri S, Yang L, Church GM. CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Nature Biotechnology. 31: 833-8. PMID 23907171 DOI: 10.1038/Nbt.2675  0.774
2012 Eroshenko N, Kosuri S, Marblestone AH, Conway N, Church GM. Gene Assembly from Chip-Synthesized Oligonucleotides. Current Protocols in Chemical Biology. 2012. PMID 25077042 DOI: 10.1002/9780470559277.Ch110190  0.756
2012 Church GM, Gao Y, Kosuri S. Next-generation digital information storage in DNA. Science (New York, N.Y.). 337: 1628. PMID 22903519 DOI: 10.1126/Science.1226355  0.468
2011 Zhang F, Cong L, Lodato S, Kosuri S, Church GM, Arlotta P. Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription. Nature Biotechnology. 29: 149-53. PMID 21248753 DOI: 10.1038/Nbt.1775  0.7
2010 Kosuri S, Eroshenko N, Leproust EM, Super M, Way J, Li JB, Church GM. Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips. Nature Biotechnology. 28: 1295-9. PMID 21113165 DOI: 10.1038/Nbt.1716  0.612
2007 Kosuri S, Kelly JR, Endy D. TABASCO: A single molecule, base-pair resolved gene expression simulator. Bmc Bioinformatics. 8: 480. PMID 18093293 DOI: 10.1186/1471-2105-8-480  0.688
2005 Chan LY, Kosuri S, Endy D. Refactoring bacteriophage T7. Molecular Systems Biology. 1: 2005.0018. PMID 16729053 DOI: 10.1038/Msb4100025  0.684
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