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Eftychios A. Pnevmatikakis, Ph.D. - Publications

Affiliations: 
2010 Columbia University, New York, NY 
Area:
Cognitive/Systems Neuroscience, Synapses and Circuits, Theoretical Neuroscience, Sensory Physiology
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27/44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Taxidis J, Pnevmatikakis EA, Dorian CC, Mylavarapu AL, Arora JS, Samadian KD, Hoffberg EA, Golshani P. Differential Emergence and Stability of Sensory and Temporal Representations in Context-Specific Hippocampal Sequences. Neuron. PMID 32949502 DOI: 10.1016/J.Neuron.2020.08.028  0.366
2019 Najafi F, Elsayed GF, Cao R, Pnevmatikakis E, Latham PE, Cunningham JP, Churchland AK. Excitatory and Inhibitory Subnetworks Are Equally Selective during Decision-Making and Emerge Simultaneously during Learning. Neuron. PMID 31753580 DOI: 10.1016/J.Neuron.2019.09.045  0.429
2019 Lacefield CO, Pnevmatikakis EA, Paninski L, Bruno RM. Reinforcement Learning Recruits Somata and Apical Dendrites across Layers of Primary Sensory Cortex. Cell Reports. 26: 2000-2008.e2. PMID 30784583 DOI: 10.1016/J.Celrep.2019.01.093  0.359
2019 Giovannucci A, Friedrich J, Gunn P, Kalfon J, Brown BL, Koay SA, Taxidis J, Najafi F, Gauthier JL, Zhou P, Khakh BS, Tank DW, Chklovskii DB, Pnevmatikakis EA. CaImAn an open source tool for scalable calcium imaging data analysis. Elife. 8. PMID 30652683 DOI: 10.7554/Elife.38173  0.341
2018 Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, et al. A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters. Nature Chemical Biology. PMID 29483642 DOI: 10.1038/S41589-018-0004-9  0.317
2018 Zhou P, Resendez SL, Rodriguez-Romaguera J, Jimenez JC, Neufeld SQ, Giovannucci A, Friedrich J, Pnevmatikakis EA, Stuber GD, Hen R, Kheirbek MA, Sabatini BL, Kass RE, Paninski L. Efficient and accurate extraction ofcalcium signals from microendoscopic video data. Elife. 7. PMID 29469809 DOI: 10.7554/Elife.28728  0.42
2017 Giovannucci A, Badura A, Deverett B, Najafi F, Pereira TD, Gao Z, Ozden I, Kloth AD, Pnevmatikakis E, Paninski L, De Zeeuw CI, Medina JF, Wang SS. Cerebellar granule cells acquire a widespread predictive feedback signal during motor learning. Nature Neuroscience. PMID 28319608 DOI: 10.1038/Nn.4531  0.359
2016 Picardo MA, Merel J, Katlowitz KA, Vallentin D, Okobi DE, Benezra SE, Clary RC, Pnevmatikakis EA, Paninski L, Long MA. Population-Level Representation of a Temporal Sequence Underlying Song Production in the Zebra Finch. Neuron. 90: 866-76. PMID 27196976 DOI: 10.1016/J.Neuron.2016.02.016  0.428
2016 Pnevmatikakis EA, Soudry D, Gao Y, Machado TA, Merel J, Pfau D, Reardon T, Mu Y, Lacefield C, Yang W, Ahrens M, Bruno R, Jessell TM, Peterka DS, Yuste R, et al. Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data. Neuron. PMID 26774160 DOI: 10.1016/J.Neuron.2015.11.037  0.434
2016 Yang W, Miller JK, Carrillo-Reid L, Pnevmatikakis E, Paninski L, Yuste R, Peterka DS. Simultaneous Multi-plane Imaging of Neural Circuits. Neuron. PMID 26774159 DOI: 10.1016/J.Neuron.2015.12.012  0.515
2016 Yang W, Miller JK, Carrillo-Reid L, Pnevmatikakis E, Paninski L, Peterka DS, Yuste R. Two-photon multiplane imaging of neural circuits(Conference Presentation) Proceedings of Spie. 9690: 969016. DOI: 10.1117/12.2219843  0.372
2015 Machado TA, Pnevmatikakis E, Paninski L, Jessell TM, Miri A. Primacy of Flexor Locomotor Pattern Revealed by Ancestral Reversion of Motor Neuron Identity. Cell. 162: 338-50. PMID 26186188 DOI: 10.1016/J.Cell.2015.06.036  0.387
2014 Michailidis IE, Abele-Henckels K, Zhang WK, Lin B, Yu Y, Geyman LS, Ehlers MD, Pnevmatikakis EA, Yang J. Age-related homeostatic midchannel proteolysis of neuronal L-type voltage-gated Ca²⁺ channels. Neuron. 82: 1045-57. PMID 24908485 DOI: 10.1016/J.Neuron.2014.04.017  0.326
2014 Ramirez A, Pnevmatikakis EA, Merel J, Paninski L, Miller KD, Bruno RM. Spatiotemporal receptive fields of barrel cortex revealed by reverse correlation of synaptic input. Nature Neuroscience. 17: 866-75. PMID 24836076 DOI: 10.1038/Nn.3720  0.474
2013 Lazar AA, Pnevmatikakis EA, Zhou Y. The power of connectivity: identity preserving transformations on visual streams in the spike domain. Neural Networks : the Official Journal of the International Neural Network Society. 44: 22-35. PMID 23545540 DOI: 10.1016/J.Neunet.2013.02.013  0.65
2012 Pnevmatikakis EA, Kelleher K, Chen R, Saggau P, Josi? K, Paninski L. Fast spatiotemporal smoothing of calcium measurements in dendritic trees. Plos Computational Biology. 8: e1002569. PMID 22787437 DOI: 10.1371/Journal.Pcbi.1002569  0.336
2011 Lazar AA, Pnevmatikakis EA. Video time encoding machines. Ieee Transactions On Neural Networks / a Publication of the Ieee Neural Networks Council. 22: 461-73. PMID 21296708 DOI: 10.1109/Tnn.2010.2103323  0.693
2011 Lazar AA, Pnevmatikakis EA. Encoding of multivariate stimuli with MIMO neural circuits Ieee International Symposium On Information Theory - Proceedings. 943-947. DOI: 10.1109/ISIT.2011.6034277  0.655
2010 Lazar AA, Pnevmatikakis EA, Zhou Y. Encoding natural scenes with neural circuits with random thresholds. Vision Research. 50: 2200-12. PMID 20350565 DOI: 10.1016/J.Visres.2010.03.015  0.704
2010 Lazar AA, Pnevmatikakis EA. Consistent recovery of sensory stimuli encoded with MIMO neural circuits. Computational Intelligence and Neuroscience. 469658. PMID 19809513 DOI: 10.1155/2010/469658  0.715
2009 Lazar AA, Pnevmatikakis EA. Reconstruction of Sensory Stimuli Encoded with Integrate-and-Fire Neurons with Random Thresholds. Eurasip Journal On Advances in Signal Processing. 2009: 682930. PMID 24077610 DOI: 10.1155/2009/682930  0.674
2009 Lazar AA, Pnevmatikakis EA. Reconstruction and classification of stimuli encoded with neural circuits with feedback Bmc Neuroscience. 10. DOI: 10.1186/1471-2202-10-S1-P123  0.629
2009 Lazar AA, Pnevmatikakis EA. Consistent recovery of stimuli encoded with a neural ensemble Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 3497-3500. DOI: 10.1109/ICASSP.2009.4960379  0.683
2008 Lazar AA, Pnevmatikakis EA. Faithful representation of stimuli with a population of integrate-and-fire neurons. Neural Computation. 20: 2715-44. PMID 18533815 DOI: 10.1162/Neco.2008.06-07-559  0.693
2008 Lazar AA, Pnevmatikakis EA. A simple spiking retina model for exact video stimulus representation Bmc Neuroscience. 9. DOI: 10.1186/1471-2202-9-S1-P130  0.683
2008 Lazar AA, Pnevmatikakis EA. A video time encoding machine Proceedings - International Conference On Image Processing, Icip. 717-720. DOI: 10.1109/ICIP.2008.4711855  0.629
2007 Lazar AA, Pnevmatikakis E. Multi input multi output neural population encoding Bmc Neuroscience. 8. DOI: 10.1186/1471-2202-8-S2-S5  0.606
Low-probability matches (unlikely to be authored by this person)
2017 Pnevmatikakis EA, Giovannucci A. NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data. Journal of Neuroscience Methods. PMID 28782629 DOI: 10.1016/J.Jneumeth.2017.07.031  0.292
2013 Michailidis IE, Abele K, Zhang WK, Geyman L, Lin B, Yu Y, Pnevmatikakis E, Yang J. Voltage-Gated Calcium Channels Exist and Function as Fragment-Channels in Neuronal Plasma Membranes Biophysical Journal. 104: 462a. DOI: 10.1016/J.Bpj.2012.11.2555  0.287
2021 Friedrich J, Giovannucci A, Pnevmatikakis EA. Online analysis of microendoscopic 1-photon calcium imaging data streams. Plos Computational Biology. 17: e1008565. PMID 33507937 DOI: 10.1371/journal.pcbi.1008565  0.281
2018 Zhou P, Resendez SL, Rodriguez-Romaguera J, Jimenez JC, Neufeld SQ, Giovannucci A, Friedrich J, Pnevmatikakis EA, Stuber GD, Hen R, Kheirbek MA, Sabatini BL, Kass RE, Paninski L. Author response: Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data Elife. DOI: 10.7554/Elife.28728.031  0.277
2023 Cai C, Dong C, Friedrich J, Rozsa M, Pnevmatikakis EA, Giovannucci A. FIOLA: an accelerated pipeline for fluorescence imaging online analysis. Nature Methods. 20: 1417-1425. PMID 37679524 DOI: 10.1038/s41592-023-01964-2  0.272
2014 Pnevmatikakis EA, Rad KR, Huggins J, Paninski L. Fast kalman filtering and forward-backward smoothing via a low- rank perturbative approach Journal of Computational and Graphical Statistics. 23: 316-339. DOI: 10.1080/10618600.2012.760461  0.266
2018 Pnevmatikakis EA. Analysis pipelines for calcium imaging data. Current Opinion in Neurobiology. 55: 15-21. PMID 30529147 DOI: 10.1016/j.conb.2018.11.004  0.259
2020 Pacheco DA, Thiberge SY, Pnevmatikakis E, Murthy M. Auditory activity is diverse and widespread throughout the central brain of Drosophila. Nature Neuroscience. PMID 33230320 DOI: 10.1038/s41593-020-00743-y  0.259
2017 Giovannucci A, Pnevmatikakis EA, Deverett B, Pereira T, Fondriest J, Brady MJ, Wang SS, Abbas W, Parés P, Masip D. Automated gesture tracking in head-fixed mice. Journal of Neuroscience Methods. PMID 28728948 DOI: 10.1016/J.Jneumeth.2017.07.014  0.242
2018 Giovannucci A, Friedrich J, Gunn P, Kalfon J, Brown BL, Koay SA, Taxidis J, Najafi F, Gauthier JL, Zhou P, Khakh BS, Tank DW, Chklovskii DB, Pnevmatikakis EA. Author response: CaImAn an open source tool for scalable calcium imaging data analysis Elife. DOI: 10.7554/Elife.38173.028  0.237
2021 Cai C, Friedrich J, Singh A, Eybposh MH, Pnevmatikakis EA, Podgorski K, Giovannucci A. VolPy: Automated and scalable analysis pipelines for voltage imaging datasets. Plos Computational Biology. 17: e1008806. PMID 33852574 DOI: 10.1371/journal.pcbi.1008806  0.228
2018 Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, et al. Publisher Correction: A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters. Nature Chemical Biology. PMID 29520042 DOI: 10.1038/S41589-018-0023-6  0.215
2013 Pnevmatikakis EA, Merel J, Pakman A, Paninski L. Bayesian spike inference from calcium imaging data Conference Record - Asilomar Conference On Signals, Systems and Computers. 349-353. DOI: 10.1109/ACSSC.2013.6810293  0.159
2013 Pfau D, Pnevmatikakis EA, Paninski L. Robust learning of low-dimensional dynamics from large neural ensembles Advances in Neural Information Processing Systems.  0.156
2008 Pnevmatikakis EA, Maragos P. An inpainting system for automatic image structure-texture restoration with text removal Proceedings - International Conference On Image Processing, Icip. 2616-2619. DOI: 10.1109/ICIP.2008.4712330  0.125
2013 Pnevmatikakis EA, Paninski L. Sparse nonnegative deconvolution for compressive calcium imaging: Algorithms and phase transitions Advances in Neural Information Processing Systems.  0.116
2012 Pnevmatikakis EA, Paninski L. Fast interior-point inference in high-dimensional sparse, penalized state-space models Journal of Machine Learning Research. 22: 895-904.  0.111
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