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Haiyan Huang - Publications

Affiliations: 
Statistics University of California, Berkeley, Berkeley, CA, United States 
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Liu K, Theusch E, Zhou Y, Ashuach T, Dose AC, Bickel PJ, Medina MW, Huang H. GeneFishing to reconstruct context specific portraits of biological processes. Proceedings of the National Academy of Sciences of the United States of America. PMID 31484776 DOI: 10.1073/Pnas.1820340116  0.357
2017 Schiffman C, Lin C, Shi F, Chen L, Sohn L, Huang H. SIDEseq: A Cell Similarity Measure Defined by Shared Identified Differentially Expressed Genes for Single-Cell RNA sequencing Data. Statistics in Biosciences. 9: 200-216. PMID 30774736 DOI: 10.1007/S12561-017-9194-Z  0.343
2017 Wang YXR, Liu K, Theusch E, Rotter JI, Medina MW, Waterman MS, Huang H. Generalized correlation measure using count statistics for gene expression data with ordered samples. Bioinformatics (Oxford, England). PMID 29040382 DOI: 10.1093/Bioinformatics/Btx641  0.353
2017 Shi F, Huang H. Identifying Cell Subpopulations and Their Genetic Drivers from Single-Cell RNA-Seq Data Using a Biclustering Approach. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 24: 663-674. PMID 28657835 DOI: 10.1089/Cmb.2017.0049  0.339
2015 Rache Wang YX, Jiang K, Feldman LJ, Bickel PJ, Huang H. Inferring gene–gene interactions and functional modules using sparse canonical correlation analysis Annals of Applied Statistics. 9: 300-323. DOI: 10.1214/14-Aoas792  0.35
2014 Wang YX, Waterman MS, Huang H. Gene coexpression measures in large heterogeneous samples using count statistics. Proceedings of the National Academy of Sciences of the United States of America. 111: 16371-6. PMID 25288767 DOI: 10.1073/Pnas.1417128111  0.385
2014 Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, Gardner K, Hillier LW, Janette J, Jiang L, Kasper D, Kawli T, Kheradpour P, Kundaje A, Li JJ, ... ... Huang H, et al. Comparative analysis of regulatory information and circuits across distant species. Nature. 512: 453-6. PMID 25164757 DOI: 10.1038/Nature13668  0.328
2014 Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, ... ... Huang H, et al. Comparative analysis of the transcriptome across distant species. Nature. 512: 445-8. PMID 25164755 DOI: 10.1038/Nature13424  0.333
2014 Li JJ, Huang H, Bickel PJ, Brenner SE. Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data. Genome Research. 24: 1086-101. PMID 24985912 DOI: 10.1101/Gr.170100.113  0.304
2014 Wang YX, Huang H. Review on statistical methods for gene network reconstruction using expression data. Journal of Theoretical Biology. 362: 53-61. PMID 24726980 DOI: 10.1016/J.Jtbi.2014.03.040  0.352
2013 Chapman MR, Balakrishnan KR, Li J, Conboy MJ, Huang H, Mohanty SK, Jabart E, Hack J, Conboy IM, Sohn LL. Sorting single satellite cells from individual myofibers reveals heterogeneity in cell-surface markers and myogenic capacity. Integrative Biology : Quantitative Biosciences From Nano to Macro. 5: 692-702. PMID 23407661 DOI: 10.1039/C3Ib20290A  0.303
2012 Gao Q, Ho C, Jia Y, Li JJ, Huang H. Biclustering of linear patterns in gene expression data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 19: 619-31. PMID 22697238 DOI: 10.1089/Cmb.2012.0032  0.363
2012 Kim K, Jiang K, Teng SL, Feldman LJ, Huang H. Using biologically interrelated experiments to identify pathway genes in Arabidopsis. Bioinformatics (Oxford, England). 28: 815-22. PMID 22271267 DOI: 10.1093/Bioinformatics/Bts038  0.564
2012 Chapman MR, Balakrishnan K, Conboy MJ, Mohanty SK, Jabart E, Li J, Huang H, Hack J, Conboy I, Sohn LL. Label-free screening of niche-to-niche variation in satellite stem cells using functionalized pores Bulletin of the American Physical Society. 38-42. DOI: 10.1039/9781849735278-00038  0.308
2010 Huang H, Liu CC, Zhou XJ. Bayesian approach to transforming public gene expression repositories into disease diagnosis databases. Proceedings of the National Academy of Sciences of the United States of America. 107: 6823-8. PMID 20360561 DOI: 10.1073/Pnas.0912043107  0.334
2010 Jiang K, Zhu T, Diao Z, Huang H, Feldman LJ. The maize root stem cell niche: a partnership between two sister cell populations. Planta. 231: 411-24. PMID 20041334 DOI: 10.1007/S00425-009-1059-3  0.373
2009 Wang F, Jiang T, Sun Z, Teng SL, Luo X, Zhu Z, Zang Y, Zhang H, Yue W, Qu M, Lu T, Hong N, Huang H, Blumberg HP, Zhang D. Neuregulin 1 genetic variation and anterior cingulum integrity in patients with schizophrenia and healthy controls. Journal of Psychiatry & Neuroscience : Jpn. 34: 181-6. PMID 19448847  0.438
2009 Teng SL, Huang H. A Statistical Framework to Infer Functional Gene Relationships From Biologically Interrelated Microarray Experiments Journal of the American Statistical Association. 104: 465-473. DOI: 10.1198/Jasa.2009.0037  0.355
2008 Huang H, Cai L, Wong WH. Clustering analysis of SAGE transcription profiles using a Poisson approach Methods in Molecular Biology (Clifton, N.J.). 387: 185-198. PMID 18287632 DOI: 10.1007/978-1-59745-454-4_14  0.341
2007 Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, ... ... Huang H, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 447: 799-816. PMID 17571346 DOI: 10.1038/Nature05874  0.311
2007 Kim K, Zhang S, Jiang K, Cai L, Lee IB, Feldman LJ, Huang H. Measuring similarities between gene expression profiles through new data transformations. Bmc Bioinformatics. 8: 29. PMID 17257435 DOI: 10.1186/1471-2105-8-29  0.341
2006 Jiang K, Zhang S, Lee S, Tsai G, Kim K, Huang H, Chilcott C, Zhu T, Feldman LJ. Transcription profile analyses identify genes and pathways central to root cap functions in maize. Plant Molecular Biology. 60: 343-63. PMID 16514559 DOI: 10.1007/S11103-005-4209-4  0.378
2005 Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S, Zeng C, Zhang J, Zhang Y, Li R, Xu Z, Li S, ... ... Huang H, et al. The Genomes of Oryza sativa: a history of duplications. Plos Biology. 3: e38. PMID 15685292 DOI: 10.1371/Journal.Pbio.0030038  0.34
2005 Zhou XJ, Kao MC, Huang H, Wong A, Nunez-Iglesias J, Primig M, Aparicio OM, Finch CE, Morgan TE, Wong WH. Functional annotation and network reconstruction through cross-platform integration of microarray data. Nature Biotechnology. 23: 238-43. PMID 15654329 DOI: 10.1038/Nbt1058  0.339
2004 Xia Q, Zhou Z, Lu C, Cheng D, Dai F, Li B, Zhao P, Zha X, Cheng T, Chai C, Pan G, Xu J, Liu C, Lin Y, Qian J, ... ... Huang H, et al. A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science (New York, N.Y.). 306: 1937-40. PMID 15591204 DOI: 10.1126/Science.1102210  0.338
2004 Allinen M, Beroukhim R, Cai L, Brennan C, Lahti-Domenici J, Huang H, Porter D, Hu M, Chin L, Richardson A, Schnitt S, Sellers WR, Polyak K. Molecular characterization of the tumor microenvironment in breast cancer. Cancer Cell. 6: 17-32. PMID 15261139 DOI: 10.1016/J.Ccr.2004.06.010  0.326
2004 Cai L, Huang H, Blackshaw S, Liu JS, Cepko C, Wong WH. Clustering analysis of SAGE data using a Poisson approach. Genome Biology. 5: R51. PMID 15239836 DOI: 10.1186/Gb-2004-5-7-R51  0.314
2004 Blackshaw S, Harpavat S, Trimarchi J, Cai L, Huang H, Kuo WP, Weber G, Lee K, Fraioli RE, Cho SH, Yung R, Asch E, Ohno-Machado L, Wong WH, Cepko CL. Genomic analysis of mouse retinal development. Plos Biology. 2: E247. PMID 15226823 DOI: 10.1371/Journal.Pbio.0020247  0.36
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