Cody Geary, Ph.D. - Publications

Affiliations: 
2010 Chemistry University of California, Santa Barbara, Santa Barbara, CA, United States 
Area:
Materials Chemistry, Biochemistry and Biophysics, Molecular Design & Synthesis, Biomedical Sciences, Biology-Inspired Chemistry & Physics

24/61 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Liu J, McRae EKS, Zhang M, Geary C, Andersen ES, Ren G. Tertiary structure of single-instant RNA molecule reveals folding landscape. Biorxiv : the Preprint Server For Biology. PMID 37292713 DOI: 10.1101/2023.05.19.541511  0.536
2023 Vallina NS, Geary C, Jepsen M, Andersen ES. Computer-Aided Design and Production of RNA Origami as Protein Scaffolds and Biosensors. Methods in Molecular Biology (Clifton, N.J.). 2639: 51-67. PMID 37166710 DOI: 10.1007/978-1-0716-3028-0_3  0.681
2023 McRae EKS, Rasmussen HØ, Liu J, Bøggild A, Nguyen MTA, Sampedro Vallina N, Boesen T, Pedersen JS, Ren G, Geary C, Andersen ES. Structure, folding and flexibility of co-transcriptional RNA origami. Nature Nanotechnology. PMID 36849548 DOI: 10.1038/s41565-023-01321-6  0.684
2022 Sampedro Vallina N, McRae EKS, Geary C, Andersen ES. An RNA Paranemic Crossover Triangle as A 3D Module for Cotranscriptional Nanoassembly. Small (Weinheim An Der Bergstrasse, Germany). e2204651. PMID 36526605 DOI: 10.1002/smll.202204651  0.704
2021 Geary C, Grossi G, McRae EKS, Rothemund PWK, Andersen ES. RNA origami design tools enable cotranscriptional folding of kilobase-sized nanoscaffolds. Nature Chemistry. PMID 33972754 DOI: 10.1038/s41557-021-00679-1  0.611
2020 Liu D, Geary CW, Chen G, Shao Y, Li M, Mao C, Andersen ES, Piccirilli JA, Rothemund PWK, Weizmann Y. Branched kissing loops for the construction of diverse RNA homooligomeric nanostructures. Nature Chemistry. PMID 31959958 DOI: 10.1038/S41557-019-0406-7  0.613
2019 Geary C, Meunier PÉ, Schabanel N, Seki S. Oritatami: A Computational Model for Molecular Co-Transcriptional Folding. International Journal of Molecular Sciences. 20. PMID 31067813 DOI: 10.3390/Ijms20092259  0.528
2019 Stewart JM, Geary C, Franco E. Design and Characterization of RNA Nanotubes. Acs Nano. PMID 31007017 DOI: 10.1021/Acsnano.8B09421  0.726
2018 Zając S, Geary C, Andersen ES, Dabrowski-Tumanski P, Sulkowska JI, Sułkowski P. Genus trace reveals the topological complexity and domain structure of biomolecules. Scientific Reports. 8: 17537. PMID 30510290 DOI: 10.1038/S41598-018-35557-3  0.6
2018 Calkins ER, Zakrevsky P, Keleshian VL, Aguilar EG, Geary C, Jaeger L. Deducing putative ancestral forms of GNRA/receptor interactions from the ribosome. Nucleic Acids Research. PMID 30418638 DOI: 10.1093/Nar/Gky1111  0.684
2017 Geary C, Chworos A, Verzemnieks E, Voss NR, Jaeger L. Composing RNA nanostructures from a syntax of RNA structural modules. Nano Letters. PMID 29039189 DOI: 10.1021/Acs.Nanolett.7B03842  0.818
2017 Sparvath SL, Geary CW, Andersen ES. Computer-Aided Design of RNA Origami Structures. Methods in Molecular Biology (Clifton, N.J.). 1500: 51-80. PMID 27813001 DOI: 10.1007/978-1-4939-6454-3_5  0.679
2014 Geary C, Rothemund PW, Andersen ES. RNA nanostructures. A single-stranded architecture for cotranscriptional folding of RNA nanostructures. Science (New York, N.Y.). 345: 799-804. PMID 25124436 DOI: 10.1126/Science.1253920  0.725
2014 Geary CW, Andersen ES. Design principles for single-stranded RNA origami structures Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8727: 1-19.  0.645
2011 Geary C, Chworos A, Jaeger L. Promoting RNA helical stacking via A-minor junctions Nucleic Acids Research. 39: 1066-1080. PMID 20876687 DOI: 10.1093/Nar/Gkq748  0.815
2010 Severcan I, Geary C, Chworos A, Voss N, Jacovetty E, Jaeger L. A polyhedron made of tRNAs Nature Chemistry. 2: 772-779. PMID 20729899 DOI: 10.1038/Nchem.733  0.765
2010 Afonin KA, Grabow W, Geary C, Severcan I, Chworos A, Yaghoubian AJ, Voss N, Jacovetty E, Bindewald E, Shapiro BA, Jaeger L. Conference paper: Complementary strategies for efficient design and synthesis of 3d self-assembling RNA nano-scaffolds 7th Annual Conference On Foundations of Nanoscience: Self-Assembled Architectures and Devices, Fnano 2010 0.748
2009 Severcan I, Geary C, Verzemnieks E, Chworos A, Jaeger L. Square-shaped RNA particles from different RNA folds Nano Letters. 9: 1270-1277. PMID 19239258 DOI: 10.1021/Nl900261H  0.777
2009 Jaeger L, Verzemnieks EJ, Geary C. The UA_handle: a versatile submotif in stable RNA architectures. Nucleic Acids Research. 37: 215-30. PMID 19036788 DOI: 10.1093/Nar/Gkn911  0.779
2009 Severcan I, Geary C, Jaeger L, Bindewald E, Kasprzak W, Shapiro BA. Computational and Experimental RNA Nanoparticle Design Automation in Proteomics and Genomics: An Engineering Case-Based Approach. 193-220. DOI: 10.1002/9780470741191.ch8  0.74
2008 Geary C, Baudrey S, Jaeger L. Comprehensive features of natural and in vitro selected GNRA tetraloop-binding receptors. Nucleic Acids Research. 36: 1138-52. PMID 18158305 DOI: 10.1093/Nar/Gkm1048  0.643
2007 Geary C, Severcan I, Verzemieks E, Chworos A, Jaeger L. Sculpting addressable and responsive nano-architectures using a three-dimensional structure syntax of RNA 4th Conference On Foundations of Nanoscience: Self-Assembled Architectures and Devices, Fnano 2007. 49-51.  0.761
2006 Bates AD, Callen BP, Cooper JM, Cosstick R, Geary C, Glidle A, Jaeger L, Pearson JL, Proupín-Pérez M, Xu C, Cumming DR. Construction and characterization of a gold nanoparticle wire assembled using Mg2+-dependent RNA-RNA interactions. Nano Letters. 6: 445-8. PMID 16522039 DOI: 10.1021/Nl052316G  0.766
2006 Cumming DRS, Bates AD, Callen BP, Cooper JM, Cosstick R, Geary C, Glidle A, Jaeger L, Pearson JL, Proupín-Ṕrez M, Xu C. Gold nanoparticle wires made using RNA-based self-assembly Journal of Vacuum Science and Technology B: Microelectronics and Nanometer Structures. 24: 3196-3199. DOI: 10.1116/1.2363404  0.742
Low-probability matches (unlikely to be authored by this person)
2015 Tanaka M, Robinson BA, Chutiraka K, Geary CD, Reed JC, Lingappa JR. Mutations of conserved residues in the major homology region arrest assembling HIV-1 Gag as a membrane-targeted intermediate containing genomic RNA and cellular proteins. Journal of Virology. PMID 26656702 DOI: 10.1128/JVI.02698-15  0.219
2010 Geary C, Jones E, Fitzpatrick D, Kelly CP, Birkinshaw C. In-vitro evaluation of a polyurethane compliant-layer glenoid for use in shoulder arthroplasty. Proceedings of the Institution of Mechanical Engineers. Part H, Journal of Engineering in Medicine. 224: 551-63. PMID 20476503 DOI: 10.1243/09544119JEIM626  0.131
2012 Reed JC, Molter B, Geary CD, McNevin J, McElrath J, Giri S, Klein KC, Lingappa JR. HIV-1 Gag co-opts a cellular complex containing DDX6, a helicase that facilitates capsid assembly. The Journal of Cell Biology. 198: 439-56. PMID 22851315 DOI: 10.1083/jcb.201111012  0.121
2024 Vallina NS, McRae EKS, Geary C, Andersen ES. An RNA origami robot that traps and releases a fluorescent aptamer. Science Advances. 10: eadk1250. PMID 38507482 DOI: 10.1126/sciadv.adk1250  0.12
2014 Robinson BA, Reed JC, Geary CD, Swain JV, Lingappa JR. A temporospatial map that defines specific steps at which critical surfaces in the Gag MA and CA domains act during immature HIV-1 capsid assembly in cells. Journal of Virology. 88: 5718-41. PMID 24623418 DOI: 10.1128/JVI.03609-13  0.09
2014 MacConaghy KI, Geary CI, Kaar JL, Stoykovich MP. Photonic crystal kinase biosensor. Journal of the American Chemical Society. 136: 6896-9. PMID 24761969 DOI: 10.1021/Ja5031062  0.073
2011 Geary C, Rosenthal SL. Sustained impact of MBSR on stress, well-being, and daily spiritual experiences for 1 year in academic health care employees. Journal of Alternative and Complementary Medicine (New York, N.Y.). 17: 939-44. PMID 22010779 DOI: 10.1089/acm.2010.0335  0.063
2008 Geary C, Birkinshaw C, Jones E. Characterisation of Bionate polycarbonate polyurethanes for orthopaedic applications Journal of Materials Science: Materials in Medicine. 19: 3355-3363. PMID 18548336 DOI: 10.1007/s10856-008-3472-8  0.062
2007 Geary CM. Mondes virtuels: Les représentations des peuples d'afrique de l'ouest par les cartes postales, 1895-1935 Temps Des Medias. 8: 75-104. DOI: 10.3917/tdm.008.0075  0.059
2014 Geary C, Parker W, Rogers S, Haney E, Njihia C, Haile A, Walakira E. Gender differences in HIV disclosure, stigma, and perceptions of health Aids Care - Psychological and Socio-Medical Aspects of Aids/Hiv. 26: 1419-1425. PMID 24921155 DOI: 10.1080/09540121.2014.921278  0.051
2014 Geiger TL, Abt MC, Gasteiger G, Firth MA, O'Connor MH, Geary CD, O'Sullivan TE, van den Brink MR, Pamer EG, Hanash AM, Sun JC. Nfil3 is crucial for development of innate lymphoid cells and host protection against intestinal pathogens. The Journal of Experimental Medicine. 211: 1723-31. PMID 25113970 DOI: 10.1084/Jem.20140212  0.034
2012 D'Souza JN, Geary C, Mukerji S. Neonatal parotid gland enlargement: Is it suppurative parotitis? a case report American Journal of Case Reports. 13: 41-43.  0.032
2014 Zhang Y, Balilionis G, Casaru C, Geary C, Schumacker RE, Neggers YH, Curtner-Smith MD, Richardson MT, Bishop PA, Green JM. Effects of caffeine and menthol on cognition and mood during simulated firefighting in the heat. Applied Ergonomics. 45: 510-4. PMID 23891504 DOI: 10.1016/J.Apergo.2013.07.005  0.029
2014 Geary CW, Bukusi EA. Women and ARV-based HIV prevention - Challenges and opportunities Journal of the International Aids Society. 17. PMID 25224621 DOI: 10.7448/Ias.17.3.19356  0.026
2015 Tosur M, Geary CA, Matalon R, Radhakrishnan RS, Swischuk LE, Tarry WF, Dong J, Lee PD. Persistence of müllerian duct structures in a genetic male with distal monosomy 10q. American Journal of Medical Genetics. Part A. 167: 791-6. PMID 25820398 DOI: 10.1002/ajmg.a.37014  0.02
2008 Geary C, Caskey M, Fonseca R, Malloy M. Decreased incidence of bronchopulmonary dysplasia after early management changes, including surfactant and nasal continuous positive airway pressure treatment at delivery, lowered oxygen saturation goals, and early amino acid administration: a historical cohort study. Pediatrics. 121: 89-96. PMID 18166561 DOI: 10.1542/peds.2007-0225  0.018
2010 Geary C, O'Donnell GE, Jones E, FitzPatrick D, Birkinshaw C. Automated in-vitro testing of orthopaedic implants: a case study in shoulder joint replacement. Proceedings of the Institution of Mechanical Engineers. Part H, Journal of Engineering in Medicine. 224: 1297-309. PMID 21218692 DOI: 10.1243/09544119JEIM746  0.016
2013 Moreira A, February M, Geary C. Parathyroid hormone in neonates Journal of Paediatrics and Child Health. 49: E12-E16. PMID 23293851 DOI: 10.1111/jpc.12052  0.015
2008 Geary CW, Burke HM, Johnson L, Liku J, Castelnau L, Neupane S, Niang C. Personal involvement of young people in HIV prevention campaign messages: the role of message format, culture, and gender. Health Education & Behavior : the Official Publication of the Society For Public Health Education. 35: 190-206. PMID 17114332 DOI: 10.1177/1090198106288252  0.014
2014 Geary C, McKee J, Triana C, Buck E, Walton S, Valdez D, Sierpina V, Kreitzer MJ. Bridging the compassion and empathy gap in medical school: the physician healer track at UTMB-Health. Explore (New York, N.Y.). 10: 203-5. PMID 24767269 DOI: 10.1016/j.explore.2014.02.012  0.013
2012 David J, Satoh S, Wu X, Geary C, Deluca J. Beam energy tracking system on Optima XEx high energy ion implanter Aip Conference Proceedings. 1496: 364-367. DOI: 10.1063/1.4766564  0.012
2013 Ramos MM, Greenberg C, Sapien R, Bauer-Creegan J, Hine B, Geary C. Behavioral health emergencies managed by school nurses working with adolescents Journal of School Health. 83: 712-717. PMID 24020685 DOI: 10.1111/josh.12085  0.011
2014 Moreira A, Swischuk L, Malloy M, Mudd D, Blanco C, Geary C. Parathyroid hormone as a marker for metabolic bone disease of prematurity. Journal of Perinatology : Official Journal of the California Perinatal Association. 34: 787-91. PMID 24875407 DOI: 10.1038/jp.2014.97  0.01
2014 Rolland Y, Resnick B, Katz PR, Little MO, Ouslander JG, Bonner A, Geary CR, Schumacher KL, Thompson S, Martin FC, Wilbers J, Zúñiga F, Ausserhofer D, Schwendimann R, Schüssler S, et al. Nursing home research: the first International Association of Gerontology and Geriatrics (IAGG) research conference. Journal of the American Medical Directors Association. 15: 313-25. PMID 24767432 DOI: 10.1016/J.Jamda.2014.03.004  0.01
2014 Satoh S, Coolbaugh R, Geary C, Deluca J. Productivity improvements utilizing OptiScan, interlaced beam scanning, for Axcelis Purion XE implanter Proceedings of the International Conference On Ion Implantation Technology. DOI: 10.1109/IIT.2014.6940026  0.01
2013 Geary CW, Baumgartner JN, Wedderburn M, Montoya T, Catone J. Sexual agency and ambivalence in the narratives of first time sexual experiences of adolescent girls in Jamaica: implications for sex education Sex Education. 13: 437-449. DOI: 10.1080/14681811.2012.750603  0.01
2013 Geary CM. The past in the present: Photographic portraiture and the evocation of multiple histories in the Bamum Kingdom of Cameroon Portraiture and Photography in Africa. 213-252.  0.01
2012 Laster J, Geary C, Sierpina VS, Kreitzer MJ. A student initiative for reducing stress in medical students: Stress-Less-Fest. Explore (New York, N.Y.). 8: 314-6. PMID 22938752 DOI: 10.1016/J.Explore.2012.06.012  0.01
2012 Geary CW, Gebreselassie H, Awah P, Pearson E. Attitudes toward abortion in Zambia. International Journal of Gynaecology and Obstetrics: the Official Organ of the International Federation of Gynaecology and Obstetrics. 118: S148-51. PMID 22920619 DOI: 10.1016/S0020-7292(12)60014-9  0.01
2012 Geary CR, Schumacher KL. Care transitions: Integrating transition theory and complexity science concepts Advances in Nursing Science. 35: 236-248. PMID 22869210 DOI: 10.1097/ANS.0b013e31826260a5  0.01
2012 Berger AM, Hertzog M, Geary CR, Fischer P, Farr L. Circadian rhythms, symptoms, physical functioning, and body mass index in breast cancer survivors. Journal of Cancer Survivorship : Research and Practice. 6: 305-14. PMID 22484807 DOI: 10.1007/S11764-012-0218-X  0.01
2012 Moreira A, Caskey M, Fonseca R, Malloy M, Geary C. Impact of providing vitamin A to the routine pulmonary care of extremely low birth weight infants. The Journal of Maternal-Fetal & Neonatal Medicine : the Official Journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians. 25: 84-8. PMID 21740337 DOI: 10.3109/14767058.2011.561893  0.01
2009 Geary C, McKee J, Sierpina VS, Kreitzer MJ. The art of healing: an adaptation of the healer's art course for fourth-year students. Explore (New York, N.Y.). 5: 306-7. PMID 19733819 DOI: 10.1016/j.explore.2009.06.010  0.01
2009 Wagman J, Baumgartner JN, Geary CW, Nakyanjo N, Ddaaki WG, Serwadda D, Gray R, Nalugoda FK, Wawer MJ. Experiences of sexual coercion among adolescent women: Qualitative findings from Rakai District, Uganda Journal of Interpersonal Violence. 24: 2073-2095. PMID 19109534 DOI: 10.1177/0886260508327707  0.01
2009 Baumgartner JN, Geary CW, Tucker H, Wedderburn M. The influence of early sexual debut and sexual violence on adolescent pregnancy: A matched case-control study in Jamaica International Perspectives On Sexual and Reproductive Health. 35: 21-28. DOI: 10.1363/3502109  0.01
2009 Geary C. Nephrotic syndrome in a bee-keeper Journal of the Royal College of Physicians of Edinburgh. 39.  0.01
2008 Geary CA, Fonseca RA, Caskey MA, Malloy MH. Improved growth and decreased morbidities in <1000 g neonates after early management changes. Journal of Perinatology : Official Journal of the California Perinatal Association. 28: 347-53. PMID 18337743 DOI: 10.1038/jp.2008.15  0.01
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