| Year |
Citation |
Score |
| 2021 |
Paull ML, Bozekowski JD, Daugherty PS. Mapping antibody binding using multiplexed epitope substitution analysis. Journal of Immunological Methods. 499: 113178. PMID 34757083 DOI: 10.1016/j.jim.2021.113178 |
0.344 |
|
| 2020 |
Kamath K, Reifert J, Johnston T, Gable C, Pantazes RJ, Rivera HN, McAuliffe I, Handali S, Daugherty PS. Antibody epitope repertoire analysis enables rapid antigen discovery and multiplex serology. Scientific Reports. 10: 5294. PMID 32210339 DOI: 10.1038/S41598-020-62256-9 |
0.439 |
|
| 2020 |
Yoo JI, Daugherty PS, O'Malley MA. Bridging non-overlapping reads illuminates high-order epistasis between distal protein sites in a GPCR. Nature Communications. 11: 690. PMID 32019920 DOI: 10.1038/S41467-020-14495-7 |
0.354 |
|
| 2019 |
Paull ML, Johnston T, Ibsen KN, Bozekowski JD, Daugherty PS. A general approach for predicting protein epitopes targeted by antibody repertoires using whole proteomes. Plos One. 14: e0217668. PMID 31490930 DOI: 10.1371/Journal.Pone.0217668 |
0.398 |
|
| 2018 |
Ballew JT, Reifert JR, Daugherty PS. Antibody Biomarker Discovery Via In Vitro Evolution of Peptides. Methods in Molecular Biology (Clifton, N.J.). 1785: 249-268. PMID 29714024 DOI: 10.1007/978-1-4939-7841-0_17 |
0.819 |
|
| 2018 |
Stach N, Kalinska M, Zdzalik M, Kitel R, Karim A, Serwin K, Rut W, Larsen K, Jabaiah A, Firlej M, Wladyka B, Daugherty P, Stennicke H, Drag M, Potempa J, et al. Unique Substrate Specificity of SplE Serine Protease from Staphylococcus aureus. Structure (London, England : 1993). PMID 29526434 DOI: 10.1016/J.Str.2018.02.008 |
0.797 |
|
| 2018 |
Bozekowski J, Graham AJ, Daugherty PS. High-titer antibody depletion enhances discovery of diverse serum antibody specificities. Journal of Immunological Methods. PMID 29360471 DOI: 10.1016/J.Jim.2018.01.003 |
0.388 |
|
| 2018 |
Paull ML, Daugherty PS. Mapping serum antibody repertoires using peptide libraries Current Opinion in Chemical Engineering. 19: 21-26. DOI: 10.1016/J.Coche.2017.12.001 |
0.446 |
|
| 2017 |
Ibsen KN, Daugherty PS. Prediction of antibody structural epitopes via random peptide library screening and next generation sequencing. Journal of Immunological Methods. PMID 28827189 DOI: 10.1016/J.Jim.2017.08.004 |
0.478 |
|
| 2016 |
Guerrero JL, Daugherty PS, O'Malley MA. Emerging technologies for protease engineering: New tools to clear out disease. Biotechnology and Bioengineering. PMID 27497426 DOI: 10.1002/Bit.26066 |
0.431 |
|
| 2016 |
Pantazes RJ, Reifert J, Bozekowski J, Ibsen KN, Murray JA, Daugherty PS. Identification of disease-specific motifs in the antibody specificity repertoire via next-generation sequencing. Scientific Reports. 6: 30312. PMID 27481573 DOI: 10.1038/Srep30312 |
0.458 |
|
| 2016 |
Elliott SE, Parchim NF, Kellems RE, Xia Y, Soffici AR, Daugherty PS. A pre-eclampsia-associated Epstein-Barr virus antibody cross-reacts with placental GPR50. Clinical Immunology (Orlando, Fla.). PMID 27181993 DOI: 10.1016/J.Clim.2016.05.002 |
0.431 |
|
| 2016 |
Guerrero JL, O'Malley MA, Daugherty PS. Intracellular FRET-based screen for redesigning the specificity of secreted proteases. Acs Chemical Biology. PMID 26730612 DOI: 10.1021/Acschembio.5B01051 |
0.508 |
|
| 2015 |
Shivange AV, Daugherty PS. De novo discovery of bioactive cyclic peptides using bacterial display and flow cytometry. Methods in Molecular Biology (Clifton, N.J.). 1248: 139-53. PMID 25616331 DOI: 10.1007/978-1-4939-2020-4_10 |
0.53 |
|
| 2014 |
Elliott SE, Parchim NF, Liu C, Xia Y, Kellems RE, Soffici AR, Daugherty PS. Characterization of antibody specificities associated with preeclampsia. Hypertension. 63: 1086-93. PMID 24446060 DOI: 10.1161/Hypertensionaha.113.02362 |
0.452 |
|
| 2014 |
Spatola BN, Kaukinen K, Collin P, Mäki M, Kagnoff MF, Daugherty PS. Persistence of elevated deamidated gliadin peptide antibodies on a gluten-free diet indicates nonresponsive coeliac disease. Alimentary Pharmacology & Therapeutics. 39: 407-17. PMID 24392888 DOI: 10.1111/Apt.12603 |
0.797 |
|
| 2014 |
Shropshire TD, Reifert J, Rajagopalan S, Baker D, Feinstein SC, Daugherty PS. Amyloid β peptide cleavage by kallikrein 7 attenuates fibril growth and rescues neurons from Aβ-mediated toxicity in vitro. Biological Chemistry. 395: 109-18. PMID 23989112 DOI: 10.1515/Hsz-2013-0230 |
0.791 |
|
| 2013 |
Henriques ST, Thorstholm L, Huang YH, Getz JA, Daugherty PS, Craik DJ. A novel quantitative kinase assay using bacterial surface display and flow cytometry. Plos One. 8: e80474. PMID 24260399 DOI: 10.1371/Journal.Pone.0080474 |
0.785 |
|
| 2013 |
Ballew JT, Murray JA, Collin P, Mäki M, Kagnoff MF, Kaukinen K, Daugherty PS. Antibody biomarker discovery through in vitro directed evolution of consensus recognition epitopes. Proceedings of the National Academy of Sciences of the United States of America. 110: 19330-5. PMID 24222690 DOI: 10.1073/Pnas.1314792110 |
0.804 |
|
| 2013 |
Desnoyers LR, Vasiljeva O, Richardson JH, Yang A, Menendez EE, Liang TW, Wong C, Bessette PH, Kamath K, Moore SJ, Sagert JG, Hostetter DR, Han F, Gee J, Flandez J, ... ... Daugherty PS, et al. Tumor-specific activation of an EGFR-targeting probody enhances therapeutic index. Science Translational Medicine. 5: 207ra144. PMID 24132639 DOI: 10.1126/Scitranslmed.3006682 |
0.333 |
|
| 2013 |
Zdzalik M, Kalinska M, Wysocka M, Stec-Niemczyk J, Cichon P, Stach N, Gruba N, Stennicke HR, Jabaiah A, Markiewicz M, Kedracka-Krok S, Wladyka B, Daugherty PS, Lesner A, Rolka K, et al. Biochemical and structural characterization of SplD protease from Staphylococcus aureus. Plos One. 8: e76812. PMID 24130791 DOI: 10.1371/Journal.Pone.0076812 |
0.817 |
|
| 2013 |
Getz JA, Cheneval O, Craik DJ, Daugherty PS. Design of a cyclotide antagonist of neuropilin-1 and -2 that potently inhibits endothelial cell migration. Acs Chemical Biology. 8: 1147-54. PMID 23537207 DOI: 10.1021/Cb4000585 |
0.829 |
|
| 2013 |
Spatola BN, Murray JA, Kagnoff M, Kaukinen K, Daugherty PS. Antibody repertoire profiling using bacterial display identifies reactivity signatures of celiac disease. Analytical Chemistry. 85: 1215-22. PMID 23234559 DOI: 10.1021/Ac303201D |
0.819 |
|
| 2012 |
Elliott SE, Soffici AR, Daugherty PS. OS042. Discovery and characterization of antibody biomarkers ofpre-eclampsia and reagents for their detection Pregnancy Hypertension: An International Journal of Women's Cardiovascular Health. 2: 199-200. PMID 26105256 DOI: 10.1016/J.Preghy.2012.04.043 |
0.493 |
|
| 2012 |
Jabaiah AM, Getz JA, Witkowski WA, Hardy JA, Daugherty PS. Identification of protease exosite-interacting peptides that enhance substrate cleavage kinetics. Biological Chemistry. 393: 933-41. PMID 22944693 DOI: 10.1515/Hsz-2012-0162 |
0.83 |
|
| 2012 |
Erster O, Thomas JM, Hamzah J, Jabaiah AM, Getz JA, Schoep TD, Hall SS, Ruoslahti E, Daugherty PS. Site-specific targeting of antibody activity in vivo mediated by disease-associated proteases. Journal of Controlled Release : Official Journal of the Controlled Release Society. 161: 804-12. PMID 22634092 DOI: 10.1016/J.Jconrel.2012.05.035 |
0.773 |
|
| 2012 |
Getz JA, Schoep TD, Daugherty PS. Peptide discovery using bacterial display and flow cytometry. Methods in Enzymology. 503: 75-97. PMID 22230566 DOI: 10.1016/B978-0-12-396962-0.00004-5 |
0.84 |
|
| 2012 |
Kalińska M, Kantyka T, Greenbaum DC, Larsen KS, Władyka B, Jabaiah A, Bogyo M, Daugherty PS, Wysocka M, Jaros M, Lesner A, Rolka K, Schaschke N, Stennicke H, Dubin A, et al. Substrate specificity of Staphylococcus aureus cysteine proteases--Staphopains A, B and C. Biochimie. 94: 318-27. PMID 21802486 DOI: 10.1016/J.Biochi.2011.07.020 |
0.796 |
|
| 2011 |
Getz JA, Rice JJ, Daugherty PS. Protease-resistant peptide ligands from a knottin scaffold library. Acs Chemical Biology. 6: 837-44. PMID 21615106 DOI: 10.1021/Cb200039S |
0.838 |
|
| 2011 |
Jabaiah A, Daugherty PS. Directed evolution of protease beacons that enable sensitive detection of endogenous MT1-MMP activity in tumor cell lines. Chemistry & Biology. 18: 392-401. PMID 21439484 DOI: 10.1016/J.Chembiol.2010.12.017 |
0.817 |
|
| 2011 |
Little LE, Dane KY, Daugherty PS, Healy KE, Schaffer DV. Exploiting bacterial peptide display technology to engineer biomaterials for neural stem cell culture. Biomaterials. 32: 1484-94. PMID 21129772 DOI: 10.1016/J.Biomaterials.2010.10.032 |
0.811 |
|
| 2010 |
Xiao Y, Dane KY, Uzawa T, Csordas A, Qian J, Soh HT, Daugherty PS, Lagally ET, Heeger AJ, Plaxco KW. Detection of telomerase activity in high concentration of cell lysates using primer-modified gold nanoparticles. Journal of the American Chemical Society. 132: 15299-307. PMID 20932008 DOI: 10.1021/Ja106513F |
0.754 |
|
| 2010 |
Boulware KT, Jabaiah A, Daugherty PS. Evolutionary optimization of peptide substrates for proteases that exhibit rapid hydrolysis kinetics. Biotechnology and Bioengineering. 106: 339-46. PMID 20148412 DOI: 10.1002/Bit.22693 |
0.808 |
|
| 2010 |
Karim AY, Kulczycka M, Kantyka T, Dubin G, Jabaiah A, Daugherty PS, Thogersen IB, Enghild JJ, Nguyen KA, Potempa J. A novel matrix metalloprotease-like enzyme (karilysin) of the periodontal pathogen Tannerella forsythia ATCC 43037. Biological Chemistry. 391: 105-17. PMID 19919176 DOI: 10.1515/Bc.2010.009 |
0.803 |
|
| 2010 |
Kenrick SA, Daugherty PS. Bacterial display enables efficient and quantitative peptide affinity maturation. Protein Engineering, Design & Selection : Peds. 23: 9-17. PMID 19903738 DOI: 10.1093/Protein/Gzp065 |
0.821 |
|
| 2009 |
Thomas JM, Daugherty PS. Proligands with protease-regulated binding activity identified from cell-displayed prodomain libraries. Protein Science : a Publication of the Protein Society. 18: 2053-9. PMID 19653300 DOI: 10.1002/Pro.217 |
0.704 |
|
| 2009 |
Hall SS, Daugherty PS. Quantitative specificity-based display library screening identifies determinants of antibody-epitope binding specificity. Protein Science : a Publication of the Protein Society. 18: 1926-34. PMID 19610073 DOI: 10.1002/Pro.203 |
0.706 |
|
| 2009 |
Dane KY, Gottstein C, Daugherty PS. Cell surface profiling with peptide libraries yields ligand arrays that classify breast tumor subtypes. Molecular Cancer Therapeutics. 8: 1312-8. PMID 19417151 DOI: 10.1158/1535-7163.Mct-08-1105 |
0.796 |
|
| 2009 |
Stec-Niemczyk J, Pustelny K, Kisielewska M, Bista M, Boulware KT, Stennicke HR, Thogersen IB, Daugherty PS, Enghild JJ, Baczynski K, Popowicz GM, Dubin A, Potempa J, Dubin G. Structural and functional characterization of SplA, an exclusively specific protease of Staphylococcus aureus. The Biochemical Journal. 419: 555-64. PMID 19175361 DOI: 10.1042/Bj20081351 |
0.812 |
|
| 2009 |
Sooter LJ, Stratis-Cullum DN, Zhang Y, Rice JJ, Ballew JT, Soh HT, Daugherty PS, Pellegrino P, Stagliano N. Hand held biowarfare assays: Rapid biowarfare detection using the combined attributes of microfluidic in vitro selections and immunochromatographic assays Acs Symposium Series. 1016: 73-83. DOI: 10.1021/bk-2009-1016.ch006 |
0.771 |
|
| 2008 |
Kim U, Qian J, Kenrick SA, Daugherty PS, Soh HT. Multitarget dielectrophoresis activated cell sorter. Analytical Chemistry. 80: 8656-61. PMID 18939853 DOI: 10.1021/Ac8015938 |
0.752 |
|
| 2008 |
Rice JJ, Daugherty PS. Directed evolution of a biterminal bacterial display scaffold enhances the display of diverse peptides. Protein Engineering, Design & Selection : Peds. 21: 435-42. PMID 18480093 DOI: 10.1093/Protein/Gzn020 |
0.719 |
|
| 2008 |
Dubin G, Stec-Niemczyk J, Kisielewska M, Pustelny K, Popowicz GM, Bista M, Kantyka T, Boulware KT, Stennicke HR, Czarna A, Phopaisarn M, Daugherty PS, Thøgersen IB, Enghild JJ, Thornberry N, et al. Enzymatic activity of the Staphylococcus aureus SplB serine protease is induced by substrates containing the sequence Trp-Glu-Leu-Gln. Journal of Molecular Biology. 379: 343-56. PMID 18448121 DOI: 10.1016/J.Jmb.2008.03.059 |
0.803 |
|
| 2007 |
Kenrick S, Rice J, Daugherty P. Flow cytometric sorting of bacterial surface-displayed libraries Current Protocols in Cytometry / Editorial Board, J. Paul Robinson, Managing Editor ... [Et Al.]. Unit4.6. PMID 18770852 DOI: 10.1002/0471142956.Cy0406S42 |
0.832 |
|
| 2007 |
Kim U, Shu CW, Dane KY, Daugherty PS, Wang JY, Soh HT. Selection of mammalian cells based on their cell-cycle phase using dielectrophoresis. Proceedings of the National Academy of Sciences of the United States of America. 104: 20708-12. PMID 18093921 DOI: 10.1073/Pnas.0708760104 |
0.742 |
|
| 2007 |
Daugherty PS. Protein engineering with bacterial display. Current Opinion in Structural Biology. 17: 474-80. PMID 17728126 DOI: 10.1016/J.Sbi.2007.07.004 |
0.405 |
|
| 2007 |
Hall SS, Mitragotri S, Daugherty PS. Identification of peptide ligands facilitating nanoparticle attachment to erythrocytes. Biotechnology Progress. 23: 749-54. PMID 17469847 DOI: 10.1021/Bp060333L |
0.709 |
|
| 2007 |
Bessette PH, Hu X, Soh HT, Daugherty PS. Microfluidic library screening for mapping antibody epitopes. Analytical Chemistry. 79: 2174-8. PMID 17253874 DOI: 10.1021/Ac0616916 |
0.444 |
|
| 2007 |
Stratis-Cullum DN, Sooter LJ, Zhang Y, Daugherty PS, Soh HT, Pellegrino P, Stagliano N. Affinity reagent technology development and application to rapid immunochromatographic pathogen detection Proceedings of Spie - the International Society For Optical Engineering. 6759. DOI: 10.1117/12.732731 |
0.347 |
|
| 2007 |
Dane KY, Suit LA, Daugherty PS. Selection of peptides internalizing into tumor cells using fluorescent bacterial display libraries Aiche Annual Meeting, Conference Proceedings. |
0.819 |
|
| 2006 |
Oh SH, Lee SH, Kenrick SA, Daugherty PS, Soh HT. Microfluidic protein detection through genetically engineered bacterial cells. Journal of Proteome Research. 5: 3433-7. PMID 17137345 DOI: 10.1021/Pr060193A |
0.786 |
|
| 2006 |
You X, Nguyen AW, Jabaiah A, Sheff MA, Thorn KS, Daugherty PS. Intracellular protein interaction mapping with FRET hybrids. Proceedings of the National Academy of Sciences of the United States of America. 103: 18458-63. PMID 17130455 DOI: 10.1073/Pnas.0605422103 |
0.806 |
|
| 2006 |
Mena MA, Treynor TP, Mayo SL, Daugherty PS. Blue fluorescent proteins with enhanced brightness and photostability from a structurally targeted library. Nature Biotechnology. 24: 1569-71. PMID 17115054 DOI: 10.1038/Nbt1264 |
0.625 |
|
| 2006 |
Boulware KT, Daugherty PS. Protease specificity determination by using cellular libraries of peptide substrates (CLiPS). Proceedings of the National Academy of Sciences of the United States of America. 103: 7583-8. PMID 16672368 DOI: 10.1073/Pnas.0511108103 |
0.833 |
|
| 2006 |
Rice JJ, Schohn A, Bessette PH, Boulware KT, Daugherty PS. Bacterial display using circularly permuted outer membrane protein OmpX yields high affinity peptide ligands. Protein Science : a Publication of the Protein Society. 15: 825-36. PMID 16600968 DOI: 10.1110/Ps.051897806 |
0.835 |
|
| 2006 |
Dane KY, Chan LA, Rice JJ, Daugherty PS. Isolation of cell specific peptide ligands using fluorescent bacterial display libraries. Journal of Immunological Methods. 309: 120-9. PMID 16448666 DOI: 10.1016/J.Jim.2005.11.021 |
0.837 |
|
| 2006 |
Oh SH, Lee SH, Kenrick SA, Daugherty PS, Soh HT. Cell-based protein sensor array using genetically engineered microbes Proceedings of the Ieee International Conference On Micro Electro Mechanical Systems (Mems). 2006: 486-489. |
0.749 |
|
| 2006 |
Oh SH, Singh AK, Bessette PH, Kenrick SA, Rice JJ, Qian J, Daugherty PS, Soh HT. Screening of molecular libraries using the continuous-flow, micro-magnetic cell sorter Micro Total Analysis Systems - Proceedings of Microtas 2006 Conference: 10th International Conference On Miniaturized Systems For Chemistry and Life Sciences. 975-977. |
0.777 |
|
| 2005 |
Curnow P, Bessette PH, Kisailus D, Murr MM, Daugherty PS, Morse DE. Enzymatic synthesis of layered titanium phosphates at low temperature and neutral pH by cell-surface display of silicatein-alpha. Journal of the American Chemical Society. 127: 15749-55. PMID 16277517 DOI: 10.1021/Ja054307F |
0.341 |
|
| 2005 |
Mena MA, Daugherty PS. Automated design of degenerate codon libraries. Protein Engineering, Design & Selection : Peds. 18: 559-61. PMID 16239261 DOI: 10.1093/Protein/Gzi061 |
0.629 |
|
| 2005 |
Hu X, Bessette PH, Qian J, Meinhart CD, Daugherty PS, Soh HT. Marker-specific sorting of rare cells using dielectrophoresis. Proceedings of the National Academy of Sciences of the United States of America. 102: 15757-61. PMID 16236724 DOI: 10.1073/Pnas.0507719102 |
0.353 |
|
| 2005 |
Nguyen AW, Daugherty PS. Evolutionary optimization of fluorescent proteins for intracellular FRET. Nature Biotechnology. 23: 355-60. PMID 15696158 DOI: 10.1038/Nbt1066 |
0.738 |
|
| 2005 |
Dane KY, Rice JJ, Daugherty PS. Isolation of tumor targeting peptides using fluorescent bacterial display libraries Aiche Annual Meeting, Conference Proceedings. 9133. |
0.832 |
|
| 2005 |
Rice JJ, Schohn A, Daugherty PS. Engineering of high affinity binding peptides using N-terminal bacterial display Aiche Annual Meeting, Conference Proceedings. 8062. |
0.731 |
|
| 2005 |
Boulware KT, Daugherty PS. Bacterial substrate display: A new method for profiling protease activity Aiche Annual Meeting, Conference Proceedings. 9268. |
0.842 |
|
| 2005 |
Mena MA, Bessette PH, Dane KY, Daugherty PS. Blue fluorescent protein variants with enhanced brightness from a computationally designed library Aiche Annual Meeting, Conference Proceedings. 8712. |
0.736 |
|
| 2005 |
Oh SH, Wood DK, Lee SH, Dane KY, Daugherty PS, Soh HT, Cleland AN. Micromachined broadband RF cytometer for high-throughput analysis of mammalian cells Micro Total Analysis Systems - Proceedings of Microtas 2005 Conference: 9th International Conference On Miniaturized Systems For Chemistry and Life Sciences. 1: 1507-1509. |
0.738 |
|
| 2004 |
Bessette PH, Rice JJ, Daugherty PS. Rapid isolation of high-affinity protein binding peptides using bacterial display. Protein Engineering, Design & Selection : Peds. 17: 731-9. PMID 15531628 DOI: 10.1093/Protein/Gzh084 |
0.753 |
|
| 2004 |
Bessette PH, Daugherty PS. Flow cytometric screening of cDNA expression libraries for fluorescent proteins. Biotechnology Progress. 20: 963-7. PMID 15176905 DOI: 10.1021/Bp034308G |
0.363 |
|
| 2003 |
Nguyen AW, Daugherty PS. Production of randomly mutated plasmid libraries using mutator strains. Methods in Molecular Biology (Clifton, N.J.). 231: 39-44. PMID 12824600 DOI: 10.1385/1-59259-395-X:39 |
0.684 |
|
| 2003 |
Bessette PH, Mena MA, Nguyen AW, Daugherty PS. Construction of designed protein libraries using gene assembly mutagenesis. Methods in Molecular Biology (Clifton, N.J.). 231: 29-37. PMID 12824599 DOI: 10.1385/1-59259-395-X:29 |
0.764 |
|
| 2000 |
Olsen MJ, Stephens D, Griffiths D, Daugherty P, Georgiou G, Iverson BL. Function-based isolation of novel enzymes from a large library. Nature Biotechnology. 18: 1071-4. PMID 11017045 DOI: 10.1038/80267 |
0.475 |
|
| 2000 |
Daugherty PS, Chen G, Iverson BL, Georgiou G. Quantitative analysis of the effect of the mutation frequency on the affinity maturation of single chain Fv antibodies. Proceedings of the National Academy of Sciences of the United States of America. 97: 2029-34. PMID 10688877 DOI: 10.1073/Pnas.030527597 |
0.356 |
|
| 1999 |
Daugherty PS, Olsen MJ, Iverson BL, Georgiou G. Development of an optimized expression system for the screening of antibody libraries displayed on the Escherichia coli surface. Protein Engineering. 12: 613-21. PMID 10436088 DOI: 10.1093/Protein/12.7.613 |
0.375 |
|
| 1998 |
Daugherty PS, Chen G, Olsen MJ, Iverson BL, Georgiou G. Antibody affinity maturation using bacterial surface display. Protein Engineering. 11: 825-32. PMID 9796833 DOI: 10.1093/Protein/11.9.825 |
0.406 |
|
| 1997 |
Georgiou G, Stathopoulos C, Daugherty PS, Nayak AR, Iverson BL, Curtiss R. Display of heterologous proteins on the surface of microorganisms: from the screening of combinatorial libraries to live recombinant vaccines. Nature Biotechnology. 15: 29-34. PMID 9035102 DOI: 10.1038/Nbt0197-29 |
0.387 |
|
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