Milan Sonka - Publications

Affiliations: 
Biomedical Engineering University of Iowa, Iowa City, IA 
Area:
Biomedical, Ophthalmology, Electronics and Electrical

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Year Citation  Score
2023 Hyer DE, Caster J, Smith B, St-Aubin J, Snyder J, Shepard A, Zhang H, Mullan S, Geoghegan T, George B, Byrne J, Smith M, Buatti JM, Sonka M. A Technique to Enable Efficient Adaptive Radiation Therapy: Automated Contouring of Prostate and Adjacent Organs. Advances in Radiation Oncology. 9: 101336. PMID 38260219 DOI: 10.1016/j.adro.2023.101336  0.381
2023 Bathla G, Dhruba DD, Liu Y, Le NH, Soni N, Zhang H, Mohan S, Roberts-Wolfe D, Rathore S, Sonka M, Priya S, Agarwal A. Differentiation Between Glioblastoma and Metastatic Disease on Conventional MRI Imaging Using 3D-Convolutional Neural Networks: Model Development and Validation. Academic Radiology. PMID 37977889 DOI: 10.1016/j.acra.2023.10.044  0.45
2023 Bathla G, Dhruba DD, Soni N, Liu Y, Larson NB, Kassmeyer BA, Mohan S, Roberts-Wolfe D, Rathore S, Lee NH, Zhang H, Sonka M, Priya S. AI-based Classification of Three Common Malignant Tumors in Neuro-oncology: A Multi-Institutional Comparison of Machine Learning and Deep Learning Methods. Journal of Neuroradiology = Journal De Neuroradiologie. PMID 37652263 DOI: 10.1016/j.neurad.2023.08.007  0.363
2023 Zaman FA, Zhang L, Zhang H, Sonka M, Wu X. Segmentation quality assessment by automated detection of erroneous surface regions in medical images. Computers in Biology and Medicine. 164: 107324. PMID 37591161 DOI: 10.1016/j.compbiomed.2023.107324  0.533
2023 Ensley JE, Tachau KH, Walsh SA, Zhang H, Simon G, Moser L, Atha J, Dilley P, Hoffman EA, Sonka M. Using computed tomography to recover hidden medieval fragments beneath early modern leather bindings, first results. Heritage Science. 11: 82. PMID 37113562 DOI: 10.1186/s40494-023-00912-9  0.425
2023 Zhang L, Guo Z, Zhang H, van der Plas E, Koscik TR, Nopoulos PC, Sonka M. Assisted annotation in Deep LOGISMOS: Simultaneous multi-compartment 3D MRI segmentation of calf muscles. Medical Physics. PMID 36750977 DOI: 10.1002/mp.16284  0.484
2021 Bathla G, Liu Y, Zhang H, Sonka M, Derdeyn C. Computed Tomography Perfusion-Based Prediction of Core Infarct and Tissue at Risk: Can Artificial Intelligence Help Reduce Radiation Exposure? Stroke. 52: e755-e759. PMID 34670412 DOI: 10.1161/STROKEAHA.121.034266  0.427
2021 Priya S, Liu Y, Ward C, Le NH, Soni N, Pillenahalli Maheshwarappa R, Monga V, Zhang H, Sonka M, Bathla G. Radiomic Based Machine Learning Performance for a Three Class Problem in Neuro-Oncology: Time to Test the Waters? Cancers. 13. PMID 34073840 DOI: 10.3390/cancers13112568  0.403
2021 Priya S, Liu Y, Ward C, Le NH, Soni N, Pillenahalli Maheshwarappa R, Monga V, Zhang H, Sonka M, Bathla G. Machine learning based differentiation of glioblastoma from brain metastasis using MRI derived radiomics. Scientific Reports. 11: 10478. PMID 34006893 DOI: 10.1038/s41598-021-90032-w  0.404
2021 Bathla G, Priya S, Liu Y, Ward C, Le NH, Soni N, Maheshwarappa RP, Monga V, Zhang H, Sonka M. Radiomics-based differentiation between glioblastoma and primary central nervous system lymphoma: a comparison of diagnostic performance across different MRI sequences and machine learning techniques. European Radiology. PMID 33890149 DOI: 10.1007/s00330-021-07845-6  0.388
2020 Guo Z, Zhang H, Chen Z, van der Plas E, Gutmann L, Thedens D, Nopoulos P, Sonka M. Fully automated 3D segmentation of MR-imaged calf muscle compartments: Neighborhood relationship enhanced fully convolutional network. Computerized Medical Imaging and Graphics : the Official Journal of the Computerized Medical Imaging Society. 87: 101835. PMID 33373972 DOI: 10.1016/j.compmedimag.2020.101835  0.483
2020 Minaee S, Kafieh R, Sonka M, Yazdani S, Jamalipour Soufi G. Deep-COVID: Predicting COVID-19 from chest X-ray images using deep transfer learning. Medical Image Analysis. 65: 101794. PMID 32781377 DOI: 10.1016/J.Media.2020.101794  0.354
2020 Samaniego EA, Roa JA, Zhang H, Koscik TR, Ortega-Gutierrez S, Bathla G, Sonka M, Derdeyn C, Magnotta VA, Hasan D. Increased contrast enhancement of the parent vessel of unruptured intracranial aneurysms in 7T MR imaging. Journal of Neurointerventional Surgery. PMID 32424006 DOI: 10.1136/Neurintsurg-2020-015915  0.447
2020 Chen Z, Mullen S, Pazdernik M, Melenovsky V, Kautzner J, Karmazin V, Bedanova H, Tomasek A, Ozabalova E, Zhang H, Wahle A, Sonka M. Assessment of Cardiac Allograft Vasculopathy from Oct Images: Automated Analysis is as Good as Expert-Guided Approach The Journal of Heart and Lung Transplantation. 39: S77. DOI: 10.1016/J.Healun.2020.01.1296  0.622
2020 Pazdernik M, Hubacek J, Wohlfahrt P, Kautzner J, Melenovsky V, Stiavnicky P, Carna Z, Karmazin V, Kovarnik T, Bedanova H, Wahle A, Chen Z, Sonka M. Role of Genetics in Development of Cardiac Allograft Vasculopathy The Journal of Heart and Lung Transplantation. 39: S76. DOI: 10.1016/J.Healun.2020.01.1293  0.336
2019 Pazdernik M, Wichterle D, Chen Z, Bedanova H, Kautzner J, Melenovsky V, Karmazin V, Malek I, Stiavnicky P, Tomasek A, Ozabalova E, Krejci J, Wahle A, Zhang H, Kovarnik T, ... Sonka M, et al. Heart rate and early progression of cardiac allograft vasculopathy: A prospective study using highly automated 3-D optical coherence tomography analysis. Clinical Transplantation. e13773. PMID 31859379 DOI: 10.1111/Ctr.13773  0.461
2019 Kassis N, Kovarnik T, Weber J, Martin B, Chen Z, Wahle A, Sonka M, Lopez JJ. OPTICAL COHERENCE TOMOGRAPHY-BASED PREDICTORS OF CORONARY PLAQUE PROGRESSION USING VALIDATED, AUTOMATED COMPUTATIONAL METHODOLOGY Journal of the American College of Cardiology. 73: 1304. DOI: 10.1016/S0735-1097(19)31911-4  0.356
2019 Pazdernik M, Wichterle D, Chen Z, Zhang H, Wahle A, Kautzner J, Melenovsky V, Malek I, Karmazin V, Bedanova H, Ozabalova E, Tomasek A, Kovarnik T, Sonka M. Effect of Heart Rate on Early Progression of Cardiac Allograft Vasculopathy: A Prospective Study Using Highly Automated 3-D Optical Coherence Tomography Analysis Journal of Heart and Lung Transplantation. 38. DOI: 10.1016/J.Healun.2019.01.708  0.497
2019 Mullan S, Chen Z, Pazdernik M, Zhang H, Wahle A, Melenovsky V, Kautzner J, Karmazin V, Bedanova H, Tomasek A, Ozabalova E, Sonka M. Deep Learning Facilitates Automation of Wall Layer Quantification in Heart Transplant Coronary OCT The Journal of Heart and Lung Transplantation. 38: S281. DOI: 10.1016/J.Healun.2019.01.702  0.577
2019 Chen Z, Pazdernik M, Wahle A, Zhang H, Melenovsky V, Kautzner J, Karmazin V, Bedanova H, Tomasek A, Ozabalova E, Sonka M. Novel Descriptors of Coronary Wall Properties Measured by OCT at Baseline Are Associated with CAV-Related Intimal Thickening One Year after Heart Transplant The Journal of Heart and Lung Transplantation. 38: S98. DOI: 10.1016/J.Healun.2019.01.229  0.569
2018 Chen Z, Pazdernik M, Zhang H, Wahle A, Guo Z, Bedanova H, Kautzner J, Melenovsky V, Kovarnik T, Sonka M. Quantitative 3D Analysis of Coronary Wall Morphology in Heart Transplant Patients: OCT-Assessed Cardiac Allograft Vasculopathy Progression. Medical Image Analysis. 50: 95-105. PMID 30253306 DOI: 10.1016/J.Media.2018.09.003  0.568
2018 Kashyap S, Zhang H, Rao K, Sonka M. Learning-Based Cost Functions for 3-D and 4-D Multi-Surface Multi-Object Segmentation of Knee MRI: Data From the Osteoarthritis Initiative. Ieee Transactions On Medical Imaging. 37: 1103-1113. PMID 29727274 DOI: 10.1109/Tmi.2017.2781541  0.575
2018 Pazdernik M, Chen Z, Bedanova H, Kautzner J, Melenovsky V, Karmazin V, Malek I, Tomasek A, Ozabalova E, Krejci J, Franekova J, Wahle A, Zhang H, Kovarnik T, Sonka M. Early detection of cardiac allograft vasculopathy using highly automated 3-dimensional optical coherence tomography analysis. The Journal of Heart and Lung Transplantation : the Official Publication of the International Society For Heart Transplantation. PMID 29706574 DOI: 10.1016/J.Healun.2018.04.002  0.543
2018 Pazdernik M, Chen Z, Bedanova H, Kautzner J, Melenovsky V, Karmazin V, Malek I, Tomasek A, Ozabalova E, Krejci J, Franekova J, Wahle A, Zhang H, Kovarnik T, Sonka M. Detecting Early Cardiac Allograft Vasculopathy Using Highly Automated 3D Coronary Optical Coherence Tomography Segmentation Analysis The Journal of Heart and Lung Transplantation. 37: S105-S106. DOI: 10.1016/J.Healun.2018.01.252  0.557
2017 Guo Z, Kwon YH, Lee K, Wang K, Wahle A, Alward WLM, Fingert JH, Bettis DI, Johnson CA, Garvin MK, Sonka M, Abràmoff MD. Optical Coherence Tomography Analysis Based Prediction of Humphrey 24-2 Visual Field Thresholds in Patients With Glaucoma. Investigative Ophthalmology & Visual Science. 58: 3975-3985. PMID 28796875 DOI: 10.1167/Iovs.17-21832  0.632
2017 Zhang L, Wahle A, Chen Z, Lopez JJ, Kovarnik T, Sonka M. Predicting Locations of High-Risk Plaques in Coronary Arteries in Patients Receiving Statin Therapy. Ieee Transactions On Medical Imaging. PMID 28708548 DOI: 10.1109/Tmi.2017.2725443  0.36
2017 Guo Z, Kashyap S, Sonka M, Oguz I. Machine learning in a graph framework for subcortical segmentation. Proceedings of Spie--the International Society For Optical Engineering. 10133. PMID 28626291 DOI: 10.1117/12.2254874  0.431
2017 Miri MS, Abràmoff MD, Kwon YH, Sonka M, Garvin MK. A machine-learning graph-based approach for 3D segmentation of Bruch's membrane opening from glaucomatous SD-OCT volumes. Medical Image Analysis. 39: 206-217. PMID 28528295 DOI: 10.1016/J.Media.2017.04.007  0.668
2017 Zhang L, Kong H, Liu S, Wang T, Chen S, Sonka M. Graph-based segmentation of abnormal nuclei in cervical cytology. Computerized Medical Imaging and Graphics : the Official Journal of the Computerized Medical Imaging Society. 56: 38-48. PMID 28222324 DOI: 10.1016/J.Compmedimag.2017.01.002  0.38
2017 Pazdernik M, Bedanova H, Kautzner J, Melenovsky V, Karmazin V, Tomasek A, Kovarnik T, Malek I, Wahle A, Chen Z, Sonka M. 2193Insights to patophysiology and risk factors of cardiac allograft vasculopathy: A prospective study using highly automated coronary optical coherence tomography segmentation software in 3D European Heart Journal. 38. DOI: 10.1093/Eurheartj/Ehx502.2193  0.374
2017 Kashyap S, Zhang H, Sonka M. Accurate Fully Automated 4D Segmentation of Osteoarthritic Knee MRI Osteoarthritis and Cartilage. 25: S227-S228. DOI: 10.1016/J.Joca.2017.02.391  0.538
2017 Kashyap S, Wahle A, Zhang H, Sonka M. Automated Prediction of Cartilage Thickness Changes in OAI MR Dataset Osteoarthritis and Cartilage. 25: S225-S226. DOI: 10.1016/J.Joca.2017.02.389  0.472
2017 Kashyap S, Zhang H, Sonka M. Just Enough Interaction for Fast Minimally Interactive Correction of 4D Segmentation of Knee MRI Osteoarthritis and Cartilage. 25: S224-S225. DOI: 10.1016/J.Joca.2017.02.388  0.502
2017 Chen Z, Wahle A, Guo Z, Zhang H, Karmazin V, Tomasek A, Bedanova H, Lopez J, Kovarnik T, Pazdernik M, Sonka M. Highly Automated Analysis of Intimal and Medial Thickness in Heart-Transplant Coronary OCT Facilitates Longitudinal Studies of CAV Progression The Journal of Heart and Lung Transplantation. 36: S155. DOI: 10.1016/J.Healun.2017.01.407  0.498
2017 Pazdernik M, Kovarnik T, Chen Z, Wahle A, Karmazin V, Melenovsky V, Kautzner J, Tomasek A, Bedanova H, Sonka M. Increased Heart Rate After Heart Transplant Is Not Associated with Early Progression of Cardiac Allograft Vasculopathy (CAV) - A Prospective Study Using Highly Automatic Coronary Optical Coherence Tomography Segmentation Software in 3D The Journal of Heart and Lung Transplantation. 36: S297-S298. DOI: 10.1016/J.Healun.2017.01.1467  0.333
2017 Pazdernik M, Kovarnik T, Sonka M, Wahle A, Chen Z, Karmazin V, Kautzner J, Tomasek A, Melenovsky V, Bedanova H. Should We Pharmacologically Modulate Renin-Aldosterone-Angiotensin System (RAAS) to Attenuate Cardiac Allograft Vasculopathy? A Prospective Study Using Highly Automated Coronary Optical Coherence Tomography Segmentation Software in 3D The Journal of Heart and Lung Transplantation. 36: S292. DOI: 10.1016/J.Healun.2017.01.1451  0.381
2016 Kashyap S, Oguz I, Zhang H, Sonka M. Automated Segmentation of Knee MRI Using Hierarchical Classifiers and Just Enough Interaction Based Learning: Data from Osteoarthritis Initiative. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 9901: 344-351. PMID 28626842 DOI: 10.1007/978-3-319-46723-8_40  0.473
2016 Kovarnik T, Chen Z, Wahle A, Fukumoto Y, Kral A, Chval M, Kopriva K, Lopez J, Sonka M, Linhart A. TCT-96 Progression of coronary atherosclerosis despite lipid-lowering therapy in diabetic patients compared to non-dibetic ones. Study with 3D intravascular ultrasound and virtual histology. Journal of the American College of Cardiology. 68: B39. PMID 27970261 DOI: 10.1016/J.Jacc.2016.09.361  0.315
2016 Kovarnik T, Jerabek S, Chen Z, Wahle A, Zhang L, Yadegari A, Fukumoto Y, Kral A, Horak J, Sonka M, Linhart A. TCT-604 Non-invasive endothelial function assessment using digital reactive hyperemia correlates with 3D intravascular ultrasound and virtual histology derived plaque volume and plaque phenotype. Journal of the American College of Cardiology. 68: B245-B246. PMID 27969976 DOI: 10.1016/J.Jacc.2016.09.743  0.318
2016 Oguz I, Abramoff MD, Zhang L, Lee K, Zhang EZ, Sonka M. 4D Graph-Based Segmentation for Reproducible and Sensitive Choroid Quantification From Longitudinal OCT Scans. Investigative Ophthalmology & Visual Science. 57: OCT621-OCT630. PMID 27936264 DOI: 10.1167/Iovs.15-18924  0.449
2016 Kovarnik T, Chen Z, Wahle A, Zhang L, Skalicka H, Kral A, Lopez JJ, Horak J, Sonka M, Linhart A. Pathologic Intimal Thickening Plaque Phenotype: Not as Innocent as Previously Thought. A Serial 3D Intravascular Ultrasound Virtual Histology Study. Revista Espanola De Cardiologia (English Ed.). PMID 27615562 DOI: 10.1016/J.Rec.2016.04.058  0.329
2016 Sonka M, Abràmoff MD. Quantitative analysis of retinal OCT. Medical Image Analysis. PMID 27503080 DOI: 10.1016/J.Media.2016.06.001  0.379
2016 Hirai T, Chen Z, Zhang L, Baaj S, Kovarnik T, Porcaro K, Kaminski J, Hawn S, Agrawal A, Makki N, Downe R, Wahle A, Sonka M, Lopez JJ. Evaluation of Variable Thin-Cap Fibroatheroma Definitions and Association of Virtual Histology-Intravascular Ultrasound Findings With Cavity Rupture Size. The American Journal of Cardiology. PMID 27289292 DOI: 10.1016/J.Amjcard.2016.04.050  0.767
2016 Kovarnik T, Jerabek S, Chen Z, Wahle A, Zhang L, Dostalova G, Skalicka H, Kral A, Horak J, Sonka M, Linhart A. Non-invasive endothelial function assessment using digital reactive hyperemia correlates with 3D intravascular ultrasound and virtual histology-derived plaque volume and plaque phenotype. Kardiologia Polska. PMID 27160175 DOI: 10.5603/Kp.A2016.0062  0.34
2016 Lee K, Buitendijk GH, Bogunovic H, Springelkamp H, Hofman A, Wahle A, Sonka M, Vingerling JR, Klaver CC, Abràmoff MD. Automated Segmentability Index for Layer Segmentation of Macular SD-OCT Images. Translational Vision Science & Technology. 5: 14. PMID 27066311 DOI: 10.1167/Tvst.5.2.14  0.381
2016 Choi CS, Zhang L, Abràmoff MD, Sonka M, Shifera AS, Kay CN. Evaluating Efficacy of Aflibercept in Refractory Exudative Age-Related Macular Degeneration With OCT Segmentation Volumetric Analysis. Ophthalmic Surgery, Lasers & Imaging Retina. 47: 245-251. PMID 26985798 DOI: 10.3928/23258160-20160229-07  0.317
2016 Philip AM, Gerendas BS, Zhang L, Faatz H, Podkowinski D, Bogunovic H, Abramoff MD, Hagmann M, Leitner R, Simader C, Sonka M, Waldstein SM, Schmidt-Erfurth U. Choroidal thickness maps from spectral domain and swept source optical coherence tomography: algorithmic versus ground truth annotation. The British Journal of Ophthalmology. PMID 26769670 DOI: 10.1136/Bjophthalmol-2015-307985  0.326
2016 Oguz I, Zhang L, Abràmoff MD, Sonka M. Optimal retinal cyst segmentation from OCT images Proceedings of Spie. 9784. DOI: 10.1117/12.2217355  0.412
2016 Chen Z, Wahle A, Zhang L, Kovarnik T, Lopez JJ, Sonka M. Comprehensive serial study of dynamic remodeling of atherosclerotic coronary arteries using IVUS Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9788. DOI: 10.1117/12.2217152  0.418
2016 Miri MS, Ghayoor A, Johnson HJ, Sonka M. Comparative study of multimodal intra-subject image registration methods on a publicly available database Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9788. DOI: 10.1117/12.2214209  0.408
2016 Kovarnik T, Chen Z, Wahle A, Skalicka H, Kral A, Lee K, Zhang L, Meliska M, Lopez J, Sonka M, Linhart A. IS RETINAL LAYER THICKNESS RELATED TO CORONARY ATHEROSCLEROSIS? A STUDY WITH RETINAL OPTICAL COHERENCE TOMOGRAPHY AND CORONARY INTRAVASCULAR ULTRASOUND-VH Journal of the American College of Cardiology. 67: 359. DOI: 10.1016/S0735-1097(16)30360-6  0.344
2016 Chen Z, Wahle A, Skalicka H, Kral A, Lopez J, Kovarnik T, Sonka M. EFFECT OF UPSTREAM AND DOWNSTREAM BIFURCATION PROXIMITY ON CORONARY PLAQUE CHANGES AFTER 1 YEAR USING COMPUTER AIDED INTRAVASCULAR ULTRASOUND ANALYSIS Journal of the American College of Cardiology. 67: 273. DOI: 10.1016/S0735-1097(16)30274-1  0.324
2015 Zhang L, Wahle A, Chen Z, Zhang L, Downe R, Kovarnik T, Sonka M. Simultaneous Registration of Location and Orientation in Intravascular Ultrasound Pullbacks Pairs via 3D Graph-Based Optimization. Ieee Transactions On Medical Imaging. PMID 26080381 DOI: 10.1109/Tmi.2015.2444815  0.812
2015 Oguz I, Styner M, Sanchez M, Shi Y, Sonka M. LOGISMOS-B for Primates: Primate Cortical Surface Reconstruction and Thickness Measurement. Proceedings of Spie--the International Society For Optical Engineering. 9413. PMID 26028802 DOI: 10.1117/12.2082327  0.32
2015 Zhang L, Buitendijk GH, Lee K, Sonka M, Springelkamp H, Hofman A, Vingerling JR, Mullins RF, Klaver CC, Abràmoff MD. Validity of Automated Choroidal Segmentation in SS-OCT and SD-OCT. Investigative Ophthalmology & Visual Science. 56: 3202-11. PMID 26024104 DOI: 10.1167/Iovs.14-15669  0.388
2015 Kafieh R, Rabbani H, Hajizadeh F, Abramoff MD, Sonka M. Thickness mapping of eleven retinal layers segmented using the diffusion maps method in normal eyes. Journal of Ophthalmology. 2015: 259123. PMID 25960888 DOI: 10.1155/2015/259123  0.324
2015 Chen H, Chen X, Qiu Z, Xiang D, Chen W, Shi F, Zheng J, Zhu W, Sonka M. Quantitative analysis of retinal layers' optical intensities on 3D optical coherence tomography for central retinal artery occlusion. Scientific Reports. 5: 9269. PMID 25784298 DOI: 10.1038/Srep09269  0.327
2015 Xu X, Lee K, Zhang L, Sonka M, Abramoff M. Stratified Sampling Voxel Classification for Segmentation of Intraretinal and Subretinal Fluid in Longitudinal Clinical OCT Data. Ieee Transactions On Medical Imaging. PMID 25769146 DOI: 10.1109/Tmi.2015.2408632  0.405
2015 Bogunović H, Kwon YH, Rashid A, Lee K, Critser DB, Garvin MK, Sonka M, Abràmoff MD. Relationships of retinal structure and humphrey 24-2 visual field thresholds in patients with glaucoma. Investigative Ophthalmology & Visual Science. 56: 259-71. PMID 25491294 DOI: 10.1167/Iovs.14-15885  0.602
2015 Shi F, Chen X, Zhao H, Zhu W, Xiang D, Gao E, Sonka M, Chen H. Automated 3-D retinal layer segmentation of macular optical coherence tomography images with serous pigment epithelial detachments. Ieee Transactions On Medical Imaging. 34: 441-52. PMID 25265605 DOI: 10.1109/Tmi.2014.2359980  0.425
2015 Zhang L, Liu S, Wang T, Chen S, Sonka M. Improved segmentation of abnormal cervical nuclei using a graph-search based approach Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9420. DOI: 10.1117/12.2082856  0.358
2015 Zhang L, Wahle A, Chen Z, Downe R, Lopez J, Kovarnik T, Sonka M. An integrated framework for spatio-temporal registration of intravascular ultrasound pullbacks Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9419. DOI: 10.1117/12.2082313  0.775
2015 Lee K, Zhang L, Abramoff MD, Sonka M. Fast and memory-efficient LOGISMOS graph search for intraretinal layer segmentation of 3D macular OCT scans Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9413. DOI: 10.1117/12.2082135  0.423
2015 Zhang L, Wahle A, Chen Z, Downe R, Kovarnik T, Sonka M. Joint registration of location and orientation of intravascular ultrasound pullbacks using a 3D graph based method Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9413. DOI: 10.1117/12.2081475  0.8
2015 Woo V, Chen Z, Hirai T, Weber JR, Kovarnik T, Wahle A, Sonka M, Lopez JJ. TCT-355 An Automated Computational Method for Quantification of Total Fibrous Cap Volume and Mean Fibrous Cap Thickness with Optical Coherence Tomography Journal of the American College of Cardiology. 66: B143-B144. DOI: 10.1016/J.Jacc.2015.08.973  0.333
2014 Gerendas BS, Waldstein SM, Simader C, Deak G, Hajnajeeb B, Zhang L, Bogunovic H, Abramoff MD, Kundi M, Sonka M, Schmidt-Erfurth U. Three-dimensional automated choroidal volume assessment on standard spectral-domain optical coherence tomography and correlation with the level of diabetic macular edema. American Journal of Ophthalmology. 158: 1039-48. PMID 25127697 DOI: 10.1016/J.Ajo.2014.08.001  0.325
2014 Bogunovic H, Sonka M, Kwon YH, Kemp P, Abramoff MD, Wu X. Multi-surface and multi-field co-segmentation of 3-D retinal optical coherence tomography. Ieee Transactions On Medical Imaging. 33: 2242-53. PMID 25020067 DOI: 10.1109/Tmi.2014.2336246  0.419
2014 Oguz I, Sonka M. LOGISMOS-B: layered optimal graph image segmentation of multiple objects and surfaces for the brain. Ieee Transactions On Medical Imaging. 33: 1220-35. PMID 24760901 DOI: 10.1109/Tmi.2014.2304499  0.382
2014 Zhang L, Sonka M, Folk JC, Russell SR, Abràmoff MD. Quantifying disrupted outer retinal-subretinal layer in SD-OCT images in choroidal neovascularization. Investigative Ophthalmology & Visual Science. 55: 2329-35. PMID 24569576 DOI: 10.1167/Iovs.13-13048  0.329
2014 Oguz I, Zhang H, Rumple A, Sonka M. RATS: Rapid Automatic Tissue Segmentation in rodent brain MRI. Journal of Neuroscience Methods. 221: 175-82. PMID 24140478 DOI: 10.1016/J.Jneumeth.2013.09.021  0.538
2014 Wilk M, Kovarnik T, Chen Z, Downe R, Masiarova T, Vimr R, Wahle A, Sonka M, Lopez J. UNDERSTANDING THE ROLE OF DEMOGRAPHIC, INFLAMMATORY, AND PLAQUE PHENOTYPIC FACTORS ON CORONARY ATHEROSCLEROTIC VESSEL REMODELING: A 3D IVUS-VH/ANGIOGRAPHIC FUSION ANALYSIS WITH INTERMEDIATE TERM FOLLOW-UP Journal of the American College of Cardiology. 63: A1780. DOI: 10.1016/S0735-1097(14)61783-6  0.782
2014 Zhang L, Kovarnik T, Hirai T, Chen Z, Porcaro K, Kaminski J, Hawn S, Agrawal A, Downe R, Wahle A, Sonka M, Lopez J. IS PLAQUE RUPTURE CAVITY SIZE RELATED TO PLAQUE COMPOSITION? A LAYERED ANALYSIS WITH INTRAVASCULAR ULTRASOUND VIRTUAL HISTOLOGY RADIOFREQUENCY DATA Journal of the American College of Cardiology. 63: A1774. DOI: 10.1016/S0735-1097(14)61777-0  0.766
2014 Wahle A, Chen Z, Wilk M, Downe R, Masiarova T, Skalicka H, Kral A, Jerabek S, Sonka M, Lopez J, Kovarnik T. VESSEL-BASED BINARY CLASSIFICATION OF CORONARY REMODELING AS POSITIVE OR NON-POSITIVE DOES NOT FULLY REFLECT VESSEL BEHAVIOR: A LONGITUDINAL 3-D IVUS/ANGIOGRAPHY STUDY WITH THREE REMODELING GROUPS Journal of the American College of Cardiology. 63: A1603. DOI: 10.1016/S0735-1097(14)61606-5  0.786
2014 Chen Z, Wahle A, Downe R, Masiarova T, Skalicka H, Vimr R, Kral A, Jerabek S, Lopez J, Sonka M, Kovarnik T. 3D ANGIOGRAPHY/IVUS-VH BASED ANALYSIS OF TEMPORAL CHANGES IN NECROTIC CORE CONTENT AND LUMINAL DISTRIBUTION WITH STATIN TREATMENT Journal of the American College of Cardiology. 63: A84. DOI: 10.1016/S0735-1097(14)60084-X  0.766
2014 Kovarnik T, Chen Z, Wahle A, Skalicka H, Kral A, Jerabek S, Sonka M, Horak J, Linhart A. TCT-353 Pathologic Intimal Thickening Plaque Phenotype - Not As Innocent As We Though. Study With 3D Intravascular Ultrasound And Virtual Histology Journal of the American College of Cardiology. 64: B103. DOI: 10.1016/J.Jacc.2014.07.400  0.332
2014 Shah A, Wang JK, Garvin MK, Sonka M, Wu X. Automated surface segmentation of internal limiting membrane in spectral-domain optical coherence tomography volumes with a deep cup using a 3-D range expansion approach 2014 Ieee 11th International Symposium On Biomedical Imaging, Isbi 2014. 1405-1408.  0.63
2013 Rabbani H, Sonka M, Abramoff MD. Optical Coherence Tomography Noise Reduction Using Anisotropic Local Bivariate Gaussian Mixture Prior in 3D Complex Wavelet Domain. International Journal of Biomedical Imaging. 2013: 417491. PMID 24222760 DOI: 10.1155/2013/417491  0.305
2013 Garvin MK, Lee K, Burns TL, Abràmoff MD, Sonka M, Kwon YH. Reproducibility of SD-OCT-based ganglion cell-layer thickness in glaucoma using two different segmentation algorithms. Investigative Ophthalmology & Visual Science. 54: 6998-7004. PMID 24045993 DOI: 10.1167/Iovs.13-12131  0.645
2013 Chen X, Hou P, Jin C, Zhu W, Luo X, Shi F, Sonka M, Chen H. Quantitative analysis of retinal layer optical intensities on three-dimensional optical coherence tomography. Investigative Ophthalmology & Visual Science. 54: 6846-51. PMID 24045992 DOI: 10.1167/Iovs.13-12062  0.344
2013 Kafieh R, Rabbani H, Abramoff MD, Sonka M. Intra-retinal layer segmentation of 3D optical coherence tomography using coarse grained diffusion map. Medical Image Analysis. 17: 907-28. PMID 23837966 DOI: 10.1016/J.Media.2013.05.006  0.43
2013 Lee K, Sonka M, Kwon YH, Garvin MK, Abràmoff MD. Adjustment of the retinal angle in SD-OCT of glaucomatous eyes provides better intervisit reproducibility of peripapillary RNFL thickness. Investigative Ophthalmology & Visual Science. 54: 4808-12. PMID 23788372 DOI: 10.1167/Iovs.13-12211  0.633
2013 Demirkaya N, van Dijk HW, van Schuppen SM, Abràmoff MD, Garvin MK, Sonka M, Schlingemann RO, Verbraak FD. Effect of age on individual retinal layer thickness in normal eyes as measured with spectral-domain optical coherence tomography. Investigative Ophthalmology & Visual Science. 54: 4934-40. PMID 23761080 DOI: 10.1167/Iovs.13-11913  0.621
2013 Sohn EH, Chen JJ, Lee K, Niemeijer M, Sonka M, Abràmoff MD. Reproducibility of diabetic macular edema estimates from SD-OCT is affected by the choice of image analysis algorithm. Investigative Ophthalmology & Visual Science. 54: 4184-8. PMID 23696607 DOI: 10.1167/Iovs.12-10420  0.327
2013 Sun S, Sonka M, Beichel RR. Graph-based IVUS segmentation with efficient computer-aided refinement. Ieee Transactions On Medical Imaging. 32: 1536-49. PMID 23649180 DOI: 10.1109/Tmi.2013.2260763  0.409
2013 Abràmoff MD, Mullins RF, Lee K, Hoffmann JM, Sonka M, Critser DB, Stasheff SF, Stone EM. Human photoreceptor outer segments shorten during light adaptation. Investigative Ophthalmology & Visual Science. 54: 3721-8. PMID 23633665 DOI: 10.1167/Iovs.13-11812  0.316
2013 Kafieh R, Rabbani H, Abramoff MD, Sonka M. Curvature correction of retinal OCTs using graph-based geometry detection. Physics in Medicine and Biology. 58: 2925-38. PMID 23574790 DOI: 10.1088/0031-9155/58/9/2925  0.385
2013 Sun S, Sonka M, Beichel RR. Lung segmentation refinement based on optimal surface finding utilizing a hybrid desktop/virtual reality user interface. Computerized Medical Imaging and Graphics : the Official Journal of the Computerized Medical Imaging Society. 37: 15-27. PMID 23415254 DOI: 10.1016/J.Compmedimag.2013.01.003  0.405
2013 Kovarnik T, Kral A, Skalicka H, Mintz GS, Kralik L, Chval M, Horak J, Skalicka L, Sonka M, Wahle A, Downe RW, Uhrova J, Benakova H, Cernohousova L, Martasek P, et al. The prediction of coronary artery disease based on non-invasive examinations and heme oxygenase 1 polymorphism versus virtual histology. The Journal of Invasive Cardiology. 25: 32-7. PMID 23293173  0.751
2013 Song Q, Bai J, Garvin MK, Sonka M, Buatti JM, Wu X. Optimal multiple surface segmentation with shape and context priors. Ieee Transactions On Medical Imaging. 32: 376-86. PMID 23193309 DOI: 10.1109/Tmi.2012.2227120  0.671
2013 Zhang H, Abiose AK, Gupta D, Campbell DN, Martins JB, Sonka M, Wahle A. Novel indices for left-ventricular dyssynchrony characterization based on highly automated segmentation from real-time 3-d echocardiography. Ultrasound in Medicine & Biology. 39: 72-88. PMID 23141901 DOI: 10.1016/J.Ultrasmedbio.2012.08.019  0.581
2013 Liu X, Chen DZ, Tawhai MH, Wu X, Hoffman EA, Sonka M. Optimal graph search based segmentation of airway tree double surfaces across bifurcations. Ieee Transactions On Medical Imaging. 32: 493-510. PMID 23070299 DOI: 10.1109/Tmi.2012.2223760  0.414
2013 Wahle A, Lee K, Harding AT, Garvin MK, Niemeijer M, Sonka M, Abràmoffa MD. Extending the XNAT Archive Tool for image and analysis management in ophthalmology research Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8674. DOI: 10.1117/12.2007966  0.647
2013 Kashyap S, Yin Y, Sonka M. Automated analysis of cartilage morphology Proceedings - International Symposium On Biomedical Imaging. 1300-1303. DOI: 10.1109/ISBI.2013.6556770  0.548
2013 Kafieh R, Rabbani H, Abramoff M, Sonka M. Intra-retinal layer segmentation of optical coherence tomography using diffusion map Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 1080-1084. DOI: 10.1109/ICASSP.2013.6637816  0.351
2012 Springelkamp H, Lee K, Ramdas WD, Vingerling JR, Hofman A, Klaver CC, Sonka M, Abràmoff MD, Jansonius NM. Optimizing the information yield of 3-D OCT in glaucoma. Investigative Ophthalmology & Visual Science. 53: 8162-71. PMID 23154462 DOI: 10.1167/Iovs.12-10551  0.369
2012 Zhang L, Lee K, Niemeijer M, Mullins RF, Sonka M, Abràmoff MD. Automated segmentation of the choroid from clinical SD-OCT. Investigative Ophthalmology & Visual Science. 53: 7510-9. PMID 23060139 DOI: 10.1167/Iovs.12-10311  0.413
2012 Lee K, Kwon YH, Garvin MK, Niemeijer M, Sonka M, Abràmoff MD. Distribution of damage to the entire retinal ganglion cell pathway: quantified using spectral-domain optical coherence tomography analysis in patients with glaucoma. Archives of Ophthalmology (Chicago, Ill. : 1960). 130: 1118-26. PMID 22965586 DOI: 10.1001/Archophthalmol.2012.669  0.642
2012 Fedorov A, Beichel R, Kalpathy-Cramer J, Finet J, Fillion-Robin JC, Pujol S, Bauer C, Jennings D, Fennessy F, Sonka M, Buatti J, Aylward S, Miller JV, Pieper S, Kikinis R. 3D Slicer as an image computing platform for the Quantitative Imaging Network. Magnetic Resonance Imaging. 30: 1323-41. PMID 22770690 DOI: 10.1016/J.Mri.2012.05.001  0.41
2012 Bauer C, Sun S, Sun W, Otis J, Wallace A, Smith BJ, Sunderland JJ, Graham MM, Sonka M, Buatti JM, Beichel RR. Automated measurement of uptake in cerebellum, liver, and aortic arch in full-body FDG PET/CT scans. Medical Physics. 39: 3112-23. PMID 22755696 DOI: 10.1118/1.4711815  0.341
2012 Chen X, Niemeijer M, Zhang L, Lee K, Abramoff MD, Sonka M. Three-dimensional segmentation of fluid-associated abnormalities in retinal OCT: probability constrained graph-search-graph-cut. Ieee Transactions On Medical Imaging. 31: 1521-31. PMID 22453610 DOI: 10.1109/Tmi.2012.2191302  0.385
2012 van Dijk HW, Verbraak FD, Kok PH, Stehouwer M, Garvin MK, Sonka M, DeVries JH, Schlingemann RO, Abràmoff MD. Early neurodegeneration in the retina of type 2 diabetic patients. Investigative Ophthalmology & Visual Science. 53: 2715-9. PMID 22427582 DOI: 10.1167/Iovs.11-8997  0.603
2012 Garvin MK, Abràmoff MD, Lee K, Niemeijer M, Sonka M, Kwon YH. 2-D pattern of nerve fiber bundles in glaucoma emerging from spectral-domain optical coherence tomography. Investigative Ophthalmology & Visual Science. 53: 483-9. PMID 22222272 DOI: 10.1167/Iovs.11-8349  0.581
2012 Kovarnik T, Mintz GS, Skalicka H, Kral A, Horak J, Skulec R, Uhrova J, Martasek P, Downe RW, Wahle A, Sonka M, Mrazek V, Aschermann M, Linhart A. Virtual histology evaluation of atherosclerosis regression during atorvastatin and ezetimibe administration: HEAVEN study. Circulation Journal : Official Journal of the Japanese Circulation Society. 76: 176-83. PMID 22076422 DOI: 10.1253/Circj.Cj-11-0730  0.762
2012 Sonka M, Park W, Hoffman EA. Rule-based detection of intrathoracic airway trees. Ieee Transactions On Medical Imaging. 15: 314-26. PMID 18215912 DOI: 10.1109/42.500140  0.382
2012 Sonka M, Winniford MD, Collins SM. Robust simultaneous detection of coronary borders in complex images. Ieee Transactions On Medical Imaging. 14: 151-61. PMID 18215820 DOI: 10.1109/42.370412  0.417
2012 Xu L, Stojkovic B, Ding H, Song Q, Wu X, Sonka M, Xu J. Efficient searching of globally optimal and smooth multi-surfaces with shape priors Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8314. DOI: 10.1117/12.912316  0.437
2012 Lee K, Abràmoff MD, Garvin MK, Sonka M. Parallel graph search: Application to intraretinal layer segmentation of 3-D macular OCT scans Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8314. DOI: 10.1117/12.911606  0.692
2012 Antonya BJ, Abramoff MD, Sonka M, Kwon YH, Garvin MK. Incorporation of texture-based features in optimal graph-theoretic approach with application to the 3-D segmentation of intraretinal surfaces in SD-OCT volumes Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8314. DOI: 10.1117/12.911491  0.654
2012 Niemeijer M, Lee K, Garvin MK, Abràmoff MD, Sonka M. Registration of 3D spectral OCT volumes combining ICP with a graph-based approach Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8314. DOI: 10.1117/12.911104  0.706
2011 Sonka M, Downe RW, Garvin JW, Lopez J, Kovarnik T, Wahle A. IVUS-based assessment of 3D morphology and virtual histology: prediction of atherosclerotic plaque status and changes. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2011: 6647-50. PMID 22255863 DOI: 10.1109/IEMBS.2011.6091639  0.781
2011 Han D, Bayouth J, Song Q, Bhatia S, Sonka M, Wu X. Feature Guided Motion Artifact Reduction with Structure-Awareness in 4D CT Images. Proceedings / Cvpr, Ieee Computer Society Conference On Computer Vision and Pattern Recognition. Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 2011: 1057-1064. PMID 22058647 DOI: 10.1109/CVPR.2011.5995561  0.311
2011 Antony B, Abràmoff MD, Tang L, Ramdas WD, Vingerling JR, Jansonius NM, Lee K, Kwon YH, Sonka M, Garvin MK. Automated 3-D method for the correction of axial artifacts in spectral-domain optical coherence tomography images. Biomedical Optics Express. 2: 2403-16. PMID 21833377 DOI: 10.1364/Boe.2.002403  0.81
2011 Han D, Bayouth J, Bhatia S, Sonka M, Wu X. Characterization and identification of spatial artifacts during 4D-CT imaging. Medical Physics. 38: 2074-87. PMID 21626940 DOI: 10.1118/1.3553556  0.42
2011 Saha PK, Liang G, Elkins JM, Coimbra A, Duong LT, Williams DS, Sonka M. A new osteophyte segmentation algorithm using partial shape model and its applications to rabbit femur anterior cruciate ligament transection via micro-CT imaging. Ieee Transactions On Bio-Medical Engineering. 58. PMID 21421428 DOI: 10.1109/Tbme.2011.2129519  0.416
2011 Bayouth JE, Casavant TL, Graham MM, Sonka M, Muruganandham M, Buatti JM. Image-based biomarkers in clinical practice. Seminars in Radiation Oncology. 21: 157-66. PMID 21356483 DOI: 10.1016/J.Semradonc.2010.11.003  0.34
2011 Xu X, Niemeijer M, Song Q, Sonka M, Garvin MK, Reinhardt JM, Abràmoff MD. Vessel boundary delineation on fundus images using graph-based approach. Ieee Transactions On Medical Imaging. 30: 1184-91. PMID 21216707 DOI: 10.1109/Tmi.2010.2103566  0.681
2011 Johnson RK, Premraj S, Patel SS, Wahle A, Stolpen A, Sonka M, Scholz TD. Quantitative assessment of the entire thoracic aorta from magnetic resonance images. Cardiology in the Young. 21: 170-7. PMID 21205418 DOI: 10.1017/S1047951110001678  0.341
2011 Wu X, Dou X, Wahle A, Sonka M. Region detection by minimizing intraclass variance with geometric constraints, global optimality, and efficient approximation. Ieee Transactions On Medical Imaging. 30: 814-27. PMID 21118766 DOI: 10.1109/Tmi.2010.2095870  0.402
2011 Xu Z, Sonka M, Saha PK. Improved tensor scale computation with application to medical image interpolation. Computerized Medical Imaging and Graphics : the Official Journal of the Computerized Medical Imaging Society. 35: 64-80. PMID 20961733 DOI: 10.1016/J.Compmedimag.2010.09.007  0.342
2011 van Dijk HW, Verbraak FD, Stehouwer M, Kok PH, Garvin MK, Sonka M, DeVries JH, Schlingemann RO, Abràmoff MD. Association of visual function and ganglion cell layer thickness in patients with diabetes mellitus type 1 and no or minimal diabetic retinopathy. Vision Research. 51: 224-8. PMID 20801146 DOI: 10.1016/J.Visres.2010.08.024  0.594
2011 Lee K, Abràmoff MD, Sonka M, Garvin MK. Automated segmentation of intraretinal layers from spectral-domain macular OCT: Reproducibility of layer thickness measurements Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7965. DOI: 10.1117/12.878242  0.63
2011 Shrestha L, Garvin J, Downe RW, Sonka M, Wahle A, Vigmostad SC. CFD study on effect of branch sizes in human coronary arteries Asme 2011 Summer Bioengineering Conference, Sbc 2011. 941-942. DOI: 10.1115/SBC2011-53270  0.76
2011 Xu L, Stojkovic B, Ding H, Song Q, Wu X, Sonka M, Xu J. Faster segmentation algorithm for optical coherence tomography images with guaranteed smoothness Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7009: 308-316. DOI: 10.1007/978-3-642-24319-6_38  0.333
2011 Han D, Bayouth J, Bhatia S, Sonka M, Wu X. Motion artifact reduction in 4D helical CT: Graph-based structure alignment Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6533: 63-73. DOI: 10.1007/978-3-642-18421-5_7  0.302
2011 Wahle A, Zhang H, Zhao F, Lee K, Downe RW, Olszewski ME, Ukil S, Tschirren J, Shikata H, Sonka M. Three-dimensional and four-dimensional cardiopulmonary image analysis Image-Based Computational Modeling of the Human Circulatory and Pulmonary Systems: Methods and Applications. 35-102. DOI: 10.1007/978-1-4419-7350-4_2  0.801
2010 Abràmoff MD, Garvin MK, Sonka M. Retinal imaging and image analysis. Ieee Reviews in Biomedical Engineering. 3: 169-208. PMID 22275207 DOI: 10.1109/Rbme.2010.2084567  0.683
2010 Abràmoff MD, Garvin MK, Sonka M. Retinal Imaging and Image Analysis. Ieee Transactions On Medical Imaging. 3: 169-208. PMID 21743764 DOI: 10.1109/RBME.2010.2084567  0.653
2010 Yin Y, Zhang X, Williams R, Wu X, Anderson DD, Sonka M. LOGISMOS--layered optimal graph image segmentation of multiple objects and surfaces: cartilage segmentation in the knee joint. Ieee Transactions On Medical Imaging. 29: 2023-37. PMID 20643602 DOI: 10.1109/Tmi.2010.2058861  0.693
2010 Quellec G, Lee K, Dolejsi M, Garvin MK, Abràmoff MD, Sonka M. Three-dimensional analysis of retinal layer texture: identification of fluid-filled regions in SD-OCT of the macula. Ieee Transactions On Medical Imaging. 29: 1321-30. PMID 20363675 DOI: 10.1109/Tmi.2010.2047023  0.683
2010 Davis PH, Dawson JD, Blecha MB, Mastbergen RK, Sonka M. Measurement of aortic intimal-medial thickness in adolescents and young adults. Ultrasound in Medicine & Biology. 36: 560-5. PMID 20350682 DOI: 10.1016/J.Ultrasmedbio.2010.01.002  0.324
2010 Saha PK, Gao Z, Alford SK, Sonka M, Hoffman EA. Topomorphologic separation of fused isointensity objects via multiscale opening: separating arteries and veins in 3-D pulmonary CT. Ieee Transactions On Medical Imaging. 29: 840-51. PMID 20199919 DOI: 10.1109/Tmi.2009.2038224  0.399
2010 Johnson RK, Premraj S, Patel SS, Walker N, Wahle A, Sonka M, Scholz TD. Automated analysis of four-dimensional magnetic resonance images of the human aorta. The International Journal of Cardiovascular Imaging. 26: 571-8. PMID 20146003 DOI: 10.1007/S10554-010-9592-5  0.438
2010 van Dijk HW, Verbraak FD, Kok PH, Garvin MK, Sonka M, Lee K, Devries JH, Michels RP, van Velthoven ME, Schlingemann RO, Abràmoff MD. Decreased retinal ganglion cell layer thickness in patients with type 1 diabetes. Investigative Ophthalmology & Visual Science. 51: 3660-5. PMID 20130282 DOI: 10.1167/Iovs.09-5041  0.605
2010 Lee K, Johnson RK, Yin Y, Wahle A, Olszewski ME, Scholz TD, Sonka M. Three-dimensional thrombus segmentation in abdominal aortic aneurysms using graph search based on a triangular mesh. Computers in Biology and Medicine. 40: 271-8. PMID 20074719 DOI: 10.1016/J.Compbiomed.2009.12.002  0.776
2010 Lee K, Niemeijer M, Garvin MK, Kwon YH, Sonka M, Abramoff MD. Segmentation of the optic disc in 3-D OCT scans of the optic nerve head. Ieee Transactions On Medical Imaging. 29: 159-68. PMID 19758857 DOI: 10.1109/Tmi.2009.2031324  0.665
2010 Zhang H, Wahle A, Johnson RK, Scholz TD, Sonka M. 4-D cardiac MR image analysis: left and right ventricular morphology and function. Ieee Transactions On Medical Imaging. 29: 350-64. PMID 19709962 DOI: 10.1109/Tmi.2009.2030799  0.576
2010 Johnson R, Premraj S, Patel S, Wahle A, Sonka M, Scholz T. Four dimensional analysis of aortic magnetic resonance images in connective tissue disorders: Novel indices of local and regional vessel properties Journal of Cardiovascular Magnetic Resonance. 12. DOI: 10.1186/1532-429X-12-S1-P240  0.414
2010 Han D, Bayouth J, Bhatia S, Sonka M, Wu X. SU-GG-I-128: Characterization and Identification of Artifacts for Helical 4D CT Image Medical Physics. 37: 3131-3131. DOI: 10.1118/1.3468162  0.388
2010 Han D, Bayouth J, Bhatia S, Sonka M, Wu X. SU-GG-I-108: Reduce Artifacts for Helical 4D CT Image Medical Physics. 37: 3126-3126. DOI: 10.1118/1.3468141  0.428
2010 Yin Y, Sonka M. Electric field theory based approach to search-direction line definition in image segmentation: Application to optimal femur-tibia cartilage segmentation in knee-joint 3-D MR Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7623. DOI: 10.1117/12.844573  0.582
2010 Gao Z, Holtze C, Sonka M, Hoffman E, Saha PK. Multiscale topo-morphologic opening of arteries and veins: A validation study on phantoms and CT imaging of pulmonary vessel casting of pigs Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7623. DOI: 10.1117/12.844456  0.408
2010 Liang G, Elkins JM, Coimbra A, Duong LT, Williams DS, Sonka M, Saha PK. A new osteophyte segmentation method with applications to an anterior cruciate ligament transection rabbit femur model via micro-CT imaging Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7623. DOI: 10.1117/12.844440  0.407
2010 Zhang H, Abiose AK, Campbell DN, Sonka M, Martins JB, Wahle A. Left-ventricle segmentation in real-time 3D echocardiography using a hybrid active shape model and optimal graph search approach Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7626. DOI: 10.1117/12.844357  0.558
2010 Lee K, Abràmoff MD, Niemeijer M, Garvin MK, Sonka M. 3-D segmentation of retinal blood vessels in spectral-domain OCT volumes of the optic nerve head Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7626. DOI: 10.1117/12.844330  0.673
2010 Song Q, Wu X, Liu Y, Garvin M, Sonka M. Simultaneous searching of globally optimal interacting surfaces with shape priors Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 2879-2886. DOI: 10.1109/CVPR.2010.5540025  0.643
2010 Han D, Sonka M, Bayouth J, Wu X. Optimal multiple-seams search for image resizing with smoothness and shape prior Visual Computer. 26: 749-759. DOI: 10.1007/S00371-010-0480-8  0.403
2009 Shikata H, McLennan G, Hoffman EA, Sonka M. Segmentation of Pulmonary Vascular Trees from Thoracic 3D CT Images. International Journal of Biomedical Imaging. 2009: 636240. PMID 20052391 DOI: 10.1155/2009/636240  0.43
2009 Abràmoff MD, Lee K, Niemeijer M, Alward WL, Greenlee EC, Garvin MK, Sonka M, Kwon YH. Automated segmentation of the cup and rim from spectral domain OCT of the optic nerve head. Investigative Ophthalmology & Visual Science. 50: 5778-84. PMID 19608531 DOI: 10.1167/Iovs.09-3790  0.635
2009 Zhao F, Zhang H, Wahle A, Thomas MT, Stolpen AH, Scholz TD, Sonka M. Congenital aortic disease: 4D magnetic resonance segmentation and quantitative analysis. Medical Image Analysis. 13: 483-93. PMID 19303351 DOI: 10.1016/J.Media.2009.02.005  0.563
2009 Garvin MK, Abràmoff MD, Wu X, Russell SR, Burns TL, Sonka M. Automated 3-D intraretinal layer segmentation of macular spectral-domain optical coherence tomography images. Ieee Transactions On Medical Imaging. 28: 1436-47. PMID 19278927 DOI: 10.1109/Tmi.2009.2016958  0.706
2009 van Dijk HW, Kok PH, Garvin M, Sonka M, Devries JH, Michels RP, van Velthoven ME, Schlingemann RO, Verbraak FD, Abràmoff MD. Selective loss of inner retinal layer thickness in type 1 diabetic patients with minimal diabetic retinopathy. Investigative Ophthalmology & Visual Science. 50: 3404-9. PMID 19151397 DOI: 10.1167/Iovs.08-3143  0.608
2009 Song Q, Wu X, Buatti J, Smith M, Sonka M. TH-C-304A-04: Simultaneous Delineation of Bladder and Prostate From 3D CT: An Optimal Graph-Theoretic Approach Medical Physics. 36: 2803-2803. DOI: 10.1118/1.3182640  0.321
2009 Han D, Bayouth J, Wu X, Sonka M. SU-FF-I-117: Evaluation of Measure Discontinuity Metrics for 4-D CT Reconstruction Data Medical Physics. 36: 2461-2462. DOI: 10.1118/1.3181238  0.343
2009 Yin Y, Zhang X, Anderson DD, Brown TD, Hofwegen CV, Sonka M. Simultaneous segmentation of the bone and cartilage surfaces of a knee joint in 3D Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7259. DOI: 10.1117/12.812764  0.552
2009 Song Q, Wu X, Dou X, Sonka M. Globally optimal 3D graph search incorporating both edge and regional information: Application to aortic MR image segmentation Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7259. DOI: 10.1117/12.812040  0.407
2009 Niemeijer M, Garvin MK, Lee K, Van Ginneken B, Abràmoff MD, Sonka M. Registration of 3D spectral OCT volumes using 3D SIFT feature point matching Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7259. DOI: 10.1117/12.811906  0.682
2009 Liu X, Chen DZ, Wu X, Sonka M. Optimal graph search based image segmentation for objects with complex topologies Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7259. DOI: 10.1117/12.811704  0.448
2009 Hu Z, Niemeijer M, Lee K, Abrámoff MD, Sonka M, Garvin MK. Automated segmentation of the optic disc margin in 3-D optical coherence tomography images using a graph-theoretic approach Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7262. DOI: 10.1117/12.811694  0.741
2009 Xu Z, Sonka M, Saha PK. Recent improvements in tensor scale computation and its applications to medical imaging Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7259. DOI: 10.1117/12.811360  0.355
2009 Saha PK, Gao Z, Alford S, Sonka M, Hoffman E. A novel multiscale topo-morphometric approach for separating arteries and veins via pulmonary CT imaging Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7259. DOI: 10.1117/12.811339  0.381
2009 Zhang H, Abiose AK, Buettner EJ, Birrer EK, Sonka M, Martins JB, Wahle A. Efficient cross-modality cardiac four-dimensional active appearance model construction Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7262. DOI: 10.1117/12.811175  0.525
2009 Yin Y, Song Q, Sonka M. Electric field theory motivated graph construction for optimal medical image segmentation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5534: 334-342. DOI: 10.1007/978-3-642-02124-4_34  0.472
2008 Garvin MK, Abramoff MD, Kardon R, Russell SR, Wu X, Sonka M. Intraretinal layer segmentation of macular optical coherence tomography images using optimal 3-D graph search. Ieee Transactions On Medical Imaging. 27: 1495-505. PMID 18815101 DOI: 10.1109/Tmi.2008.923966  0.698
2008 Sonka M. TH-C-342-03: Quantitative Medical Image Analysis for Early Detection, Diagnosis, Outcome Prediction, and Treatment Medical Physics. 35: 2979-2979. DOI: 10.1118/1.2962879  0.412
2008 Kyungmoo L, Yin Y, Wahle A, Olszewski ME, Sonka M. 3-D segmentation and quantitative analysis of inner and outer walls of thrombotic abdominal aortic aneurysms Progress in Biomedical Optics and Imaging - Proceedings of Spie. 6916. DOI: 10.1117/12.773394  0.717
2008 Niemeijer M, Garvin MK, Van Ginnekenc B, Sonka M, Abràmoff MD. Vessel segmentation in 3D spectral OCT scans of the retina Progress in Biomedical Optics and Imaging - Proceedings of Spie. 6914. DOI: 10.1117/12.772680  0.68
2008 Dou X, Wu X, Wahle A, Sonka M. Globally optimal surface segmentation using regional properties of segmented objects 26th Ieee Conference On Computer Vision and Pattern Recognition, Cvpr. DOI: 10.1109/CVPR.2008.4587429  0.309
2008 Song Q, Yin Y, Chen M, Kim Y, Bayouth J, Buatti J, Siochi R, Sonka M, Wu X. Simultaneous Segmentation of Bladder and Prostate using Globally Optimal 3-D Graph Search Method International Journal of Radiation Oncology*Biology*Physics. 72: S148. DOI: 10.1016/J.Ijrobp.2008.06.475  0.336
2007 Wu X, Chen DZ, Li K, Sonka M. THE LAYERED NET SURFACE PROBLEMS IN DISCRETE GEOMETRY AND MEDICAL IMAGE SEGMENTATION. International Journal of Computational Geometry & Applications. 17: 261-296. PMID 20221409 DOI: 10.1142/S0218195907002331  0.399
2007 Zhang X, Stockel J, Wolf M, Cathier P, McLennan G, Hoffman EA, Sonka M. A new method for spherical object detection and its application to computer aided detection of pulmonary nodules in CT images. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 10: 842-9. PMID 18051137  0.554
2007 Haeker M, Abràmoff MD, Wu X, Kardon R, Sonka M. Use of varying constraints in optimal 3-D graph search for segmentation of macular optical coherence tomography images. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 10: 244-51. PMID 18051065  0.305
2007 Haeker M, Wu X, Abràmoff M, Kardon R, Sonka M. Incorporation of regional information in optimal 3-D graph search with application for intraretinal layer segmentation of optical coherence tomography images. Information Processing in Medical Imaging : Proceedings of the ... Conference. 20: 607-18. PMID 17633733  0.3
2007 Dedkov EI, Thomas MT, Sonka M, Yang F, Chittenden TW, Rhodes JM, Simons M, Ritman EL, Tomanek RJ. Synectin/syndecan-4 regulate coronary arteriolar growth during development. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 236: 2004-10. PMID 17576142 DOI: 10.1002/Dvdy.21201  0.576
2007 Stone PH, Coskun AU, Kinlay S, Popma JJ, Sonka M, Wahle A, Yeghiazarians Y, Maynard C, Kuntz RE, Feldman CL. Regions of low endothelial shear stress are the sites where coronary plaque progresses and vascular remodelling occurs in humans: an in vivo serial study. European Heart Journal. 28: 705-10. PMID 17347172 DOI: 10.1093/Eurheartj/Ehl575  0.348
2007 Haeker M, Sonka M, Kardon R, Shah VA, Wu X, Abràmoff MD. Automated segmentation of intraretinal layers from macular optical coherence tomography images Progress in Biomedical Optics and Imaging - Proceedings of Spie. 6512. DOI: 10.1117/12.710231  0.34
2007 Zhang H, Thomas MT, Walker NE, Stolpen AH, Wahle A, Scholz TD, Sonka M. Four-dimensional functional analysis of left and right ventricles using MR images and active appearance models Progress in Biomedical Optics and Imaging - Proceedings of Spie. 6511. DOI: 10.1117/12.709423  0.447
2007 Sonka M, Tschirren J, Ukil S, Zhang X, Xu Y, Reinhardt JM, Van Beek EJ, McLennan G, Hoffman EA. Pulmonary CT image analysis and computer aided detection 2007 4th Ieee International Symposium On Biomedical Imaging: From Nano to Macro - Proceedings. 500-503. DOI: 10.1109/ISBI.2007.356898  0.672
2006 Oost E, Koning G, Sonka M, Oemrawsingh PV, Reiber JH, Lelieveldt BP. Automated contour detection in X-ray left ventricular angiograms using multiview active appearance models and dynamic programming. Ieee Transactions On Medical Imaging. 25: 1158-71. PMID 16967801 DOI: 10.1109/Tmi.2006.877094  0.336
2006 Chandran KB, Wahle A, Vigmostad SC, Olszewski ME, Rossen JD, Sonka M. Coronary arteries: imaging, reconstruction, and fluid dynamic analysis. Critical Reviews in Biomedical Engineering. 34: 23-103. PMID 16749889 DOI: 10.1615/Critrevbiomedeng.V34.I1.20  0.719
2006 Wahle A, Lopez JJ, Olszewski ME, Vigmostad SC, Chandran KB, Rossen JD, Sonka M. Plaque development, vessel curvature, and wall shear stress in coronary arteries assessed by X-ray angiography and intravascular ultrasound. Medical Image Analysis. 10: 615-31. PMID 16644262 DOI: 10.1016/J.Media.2006.03.002  0.728
2006 Xu Y, Sonka M, McLennan G, Guo J, Hoffman EA. MDCT-based 3-D texture classification of emphysema and early smoking related lung pathologies. Ieee Transactions On Medical Imaging. 25: 464-75. PMID 16608061 DOI: 10.1109/Tmi.2006.870889  0.335
2006 Ramaswamy SD, Vigmostad SC, Wahle A, Lai YG, Olszewski ME, Braddy KC, Brennan TM, Rossen JD, Sonka M, Chandran KB. Comparison of left anterior descending coronary artery hemodynamics before and after angioplasty. Journal of Biomechanical Engineering. 128: 40-8. PMID 16532616 DOI: 10.1115/1.2132371  0.715
2006 Li K, Wu X, Chen DZ, Sonka M. Optimal surface segmentation in volumetric images--a graph-theoretic approach. Ieee Transactions On Pattern Analysis and Machine Intelligence. 28: 119-34. PMID 16402624 DOI: 10.1109/Tpami.2006.19  0.41
2006 Feldman CL, Coskun AU, Yeghiazarians Y, Kinlay S, Wahle A, Olszewski ME, Rossen JD, Sonka M, Popma JJ, Orav J, Kuntz RE, Stone PH. Remodeling characteristics of minimally diseased coronary arteries are consistent along the length of the artery. The American Journal of Cardiology. 97: 13-6. PMID 16377275 DOI: 10.1016/J.Amjcard.2005.07.121  0.695
2006 Palágyi K, Tschirren J, Hoffman EA, Sonka M. Quantitative analysis of pulmonary airway tree structures. Computers in Biology and Medicine. 36: 974-96. PMID 16076463 DOI: 10.1016/J.Compbiomed.2005.05.004  0.719
2006 Olszewski ME, Wahle A, Vembar M, Ciancibello L, Kerner A, Beyar R, Ghersin E, Subramanyan K, Sonka M. Quantitative analysis of vascular dimension and plaque composition in coronary multidetector computed tomography images Progress in Biomedical Optics and Imaging - Proceedings of Spie. 6143. DOI: 10.1117/12.657992  0.718
2006 Zhang X, Stockel J, Wolf M, Cathier P, McLennan G, Hoffman EA, Sonka M. Computerized detection of pulmonary nodules using a combination of 3D global and local shape information based on helical CT images Progress in Biomedical Optics and Imaging - Proceedings of Spie. 6144. DOI: 10.1117/12.654285  0.563
2006 Zhang H, Walker N, Mitchell SC, Thomas M, Wahle A, Scholz T, Sonka M. Analysis of four-dimensional cardiac ventricular magnetic resonance images using statistical models of ventricular shape and cardiac motion Progress in Biomedical Optics and Imaging - Proceedings of Spie. 6143. DOI: 10.1117/12.653621  0.676
2006 Zhao F, Zhang H, Walker NE, Yang F, Olszewski ME, Wahle A, Scholz T, Sonka M. Quantitative analysis of two-phase 3D+time aortic MR images Progress in Biomedical Optics and Imaging - Proceedings of Spie. 6144. DOI: 10.1117/12.652763  0.771
2006 Reinhard JM, Van Ginneken B, Sonka M. Special issue on pulmonary imaging Ieee Transactions On Medical Imaging. 25: 381-383. DOI: 10.1109/Tmi.2006.870840  0.31
2006 Vigmostad S, Wahle A, Olszewski M, Rossen J, Sonka M, Chandran K. Effects of local geometry on the fluid dynamics of coronary artery segments with implanted stents Journal of Biomechanics. 39: S401. DOI: 10.1016/S0021-9290(06)84627-0  0.7
2006 Legeveldt B, Frangi A, Mitchell S, Van Assen H, Ordas S, Reiber J, Sonka M. 3D active shape and appearance models in cardiac image analysis Handbook of Mathematical Models in Computer Vision. 471-485. DOI: 10.1007/0-387-28831-7_29  0.576
2006 Hansen MS, Zhao F, Zhang H, Walker NE, Wahle A, Scholz T, Sonka M. Detection of connective tissue disorders from 3D aortic MR images using independent component analysis Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4241: 13-24.  0.501
2006 Zhao F, Zhang H, Wahle A, Scholz TD, Sonka M. Automated 4D segmentation of aortic magnetic resonance images Bmvc 2006 - Proceedings of the British Machine Vision Conference 2006. 247-256.  0.313
2005 Zhang X, McLennan G, Hoffman EA, Sonka M. Automated detection of small-size pulmonary nodules based on helical CT images. Information Processing in Medical Imaging : Proceedings of the ... Conference. 19: 664-76. PMID 17354734  0.529
2005 Yang F, Mackey MA, Ianzini F, Gallardo G, Sonka M. Cell segmentation, tracking, and mitosis detection using temporal context. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 8: 302-9. PMID 16685859  0.545
2005 Tschirren J, McLennan G, Palágyi K, Hoffman EA, Sonka M. Matching and anatomical labeling of human airway tree. Ieee Transactions On Medical Imaging. 24: 1540-7. PMID 16353371 DOI: 10.1109/Tmi.2005.857653  0.704
2005 Tschirren J, Hoffman EA, McLennan G, Sonka M. Intrathoracic airway trees: segmentation and airway morphology analysis from low-dose CT scans. Ieee Transactions On Medical Imaging. 24: 1529-39. PMID 16353370 DOI: 10.1109/Tmi.2005.857654  0.723
2005 Tschirren J, Hoffman EA, McLennan G, Sonka M. Segmentation and quantitative analysis of intrathoracic airway trees from computed tomography images. Proceedings of the American Thoracic Society. 2: 484-7, 503-4. PMID 16352753 DOI: 10.1513/pats.200507-078DS  0.713
2005 Beichel R, Bischof H, Leberl F, Sonka M. Robust active appearance models and their application to medical image analysis. Ieee Transactions On Medical Imaging. 24: 1151-69. PMID 16156353 DOI: 10.1109/Tmi.2005.853237  0.383
2005 Wahle A, Sonka M. Coronary plaque analysis by multimodality fusion. Studies in Health Technology and Informatics. 113: 321-59. PMID 15923747  0.316
2005 Bu L, Munns S, Zhang H, Disterhoft M, Dixon M, Stolpen A, Sonka M, Scholz TD, Mahoney LT, Ge S. Rapid full volume data acquisition by real-time 3-dimensional echocardiography for assessment of left ventricular indexes in children: a validation study compared with magnetic resonance imaging. Journal of the American Society of Echocardiography : Official Publication of the American Society of Echocardiography. 18: 299-305. PMID 15846155 DOI: 10.1016/J.Echo.2004.11.002  0.521
2005 Uzümcü M, van der Geest RJ, Sonka M, Lamb HJ, Reiber JH, Lelieveldt BP. Multiview active appearance models for simultaneous segmentation of cardiac 2- and 4-chamber long-axis magnetic resonance images. Investigative Radiology. 40: 195-203. PMID 15770137 DOI: 10.1097/01.Rli.0000154216.94316.F7  0.388
2005 Bosch JG, Nijland F, Mitchell SC, Lelieveldt BP, Kamp O, Reiber JH, Sonka M. Computer-aided diagnosis via model-based shape analysis: automated classification of wall motion abnormalities in echocardiograms. Academic Radiology. 12: 358-67. PMID 15766696 DOI: 10.1016/J.Acra.2004.11.025  0.587
2005 Ge S, Bu L, Zhang H, Schelbert E, Disterhoft M, Li X, Li X, Sahn D, Stolpen A, Sonka M. A real-time 3-dimensional digital Doppler method for measurement of flow rate and volume through mitral valve in children: a validation study compared with magnetic resonance imaging. Journal of the American Society of Echocardiography : Official Publication of the American Society of Echocardiography. 18: 1-7. PMID 15637481 DOI: 10.1016/J.Echo.2004.08.021  0.51
2005 van der Geest RJ, Lelieveldt BP, Angelié E, Danilouchkine M, Swingen C, Sonka M, Reiber JH. Evaluation of a new method for automated detection of left ventricular boundaries in time series of magnetic resonance images using an Active Appearance Motion Model. Journal of Cardiovascular Magnetic Resonance : Official Journal of the Society For Cardiovascular Magnetic Resonance. 6: 609-17. PMID 15347125 DOI: 10.1081/Jcmr-120038082  0.394
2005 Olszewski ME, Wahle A, Khullar D, Subramanyan K, Sonka M. A study investigating automated quantitative analyses of coronary multidetector computed tomography images Progress in Biomedical Optics and Imaging - Proceedings of Spie. 5746: 214-222. DOI: 10.1117/12.599774  0.745
2005 Wahle A, Lopez JJ, Olszewski ME, Vigmostad SC, Braddy KC, Brennan TMH, Bokhari SW, Bennett JG, Holper EM, Rossen JD, Chandran KB, Sonka M. Relationship between plaque development and local hemodynamics in coronary arteries Progress in Biomedical Optics and Imaging - Proceedings of Spie. 5746: 223-232. DOI: 10.1117/12.596902  0.697
2005 Olszewski ME, Wahle A, Vigmostad SC, Sonka M. Multidimensional segmentation of coronary intravascular ultrasound images using knowledge-based methods Progress in Biomedical Optics and Imaging - Proceedings of Spie. 5747: 496-504. DOI: 10.1117/12.595850  0.728
2005 Zhang X, McLennan G, Hoffman EA, Sonka M. 3D segmentation of non-isolated pulmonary nodules in high resolution CT images Progress in Biomedical Optics and Imaging - Proceedings of Spie. 5747: 1438-1445. DOI: 10.1117/12.594938  0.551
2005 Zhang X, McLennan G, Hoffman EA, Sonka M. A complete CAD system for pulmonary nodule detection in high resolution CT images Progress in Biomedical Optics and Imaging - Proceedings of Spie. 5747: 85-96. DOI: 10.1117/12.594916  0.533
2005 McMahon EM, Korinek J, Zhang H, Sonka M, Manduca A, Belohlavek M. Neural network and principal component analyses of highly variable myocardial mechanical waveforms derived from echocardiographic ultrasound images Proceedings of the International Joint Conference On Neural Networks. 5: 3017-3022. DOI: 10.1109/IJCNN.2005.1556406  0.428
2005 Walker NE, Olszewski ME, Wahle A, Nixon E, Sieren JP, Yang F, Hoffman EA, Rossen JD, Sonka M. Measurement of coronary vasoreactivity in sheep using 64-slice multidetector computed tomography and 3-D segmentation International Congress Series. 1281: 1304. DOI: 10.1016/j.ics.2005.03.189  0.587
2005 Wahle A, Lopez JJ, Olszewski ME, Vigmostad SC, Chandran KB, Rossen JD, Sonka M. Analysis of the interdependencies among plaque development, vessel curvature, and wall shear stress in coronary arteries Lecture Notes in Computer Science. 3504: 12-22.  0.693
2004 Ramaswamy SD, Vigmostad SC, Wahle A, Lai YG, Olszewski ME, Braddy KC, Brennan TM, Rossen JD, Sonka M, Chandran KB. Fluid dynamic analysis in a human left anterior descending coronary artery with arterial motion. Annals of Biomedical Engineering. 32: 1628-41. PMID 15675676 DOI: 10.1007/S10439-004-7816-3  0.705
2004 Hoffman EA, Clough AV, Christensen GE, Lin CL, McLennan G, Reinhardt JM, Simon BA, Sonka M, Tawhai MH, van Beek EJ, Wang G. The comprehensive imaging-based analysis of the lung: a forum for team science. Academic Radiology. 11: 1370-80. PMID 15596375 DOI: 10.1016/J.Acra.2004.09.005  0.348
2004 Wahle A, Olszewski ME, Sonka M. Interactive virtual endoscopy in coronary arteries based on multimodality fusion. Ieee Transactions On Medical Imaging. 23: 1391-403. PMID 15554127 DOI: 10.1109/Tmi.2004.837109  0.739
2004 Suter M, Tschirren J, Reinhardt J, Sonka M, Hoffman E, Higgins W, McLennan G. Evaluation of the human airway with multi-detector x-ray-computed tomography and optical imaging. Physiological Measurement. 25: 837-47. PMID 15382825 DOI: 10.1088/0967-3334/25/4/005  0.725
2004 Medina R, Wahle A, Olszewski ME, Sonka M. Curvature and torsion estimation for coronary-artery motion analysis Proceedings of Spie - the International Society For Optical Engineering. 5369: 504-515. DOI: 10.1117/12.537301  0.704
2004 Tschirren J, Hoffman EA, McLennan G, Sonka M. Airway tree segmentation using adaptive regions of interest Proceedings of Spie - the International Society For Optical Engineering. 5369: 117-124. DOI: 10.1117/12.537185  0.664
2004 Yang F, Mackey MA, Ianzini F, Gallardo G, Sonka M. Segmentation and quantitative analysis of the living tumor cells using large scale digital cell analysis system Proceedings of Spie - the International Society For Optical Engineering. 5370: 1755-1763. DOI: 10.1117/12.536771  0.538
2004 Gallardo G, Yang F, Ianzini F, Mackey MA, Sonka M. Mitotic cell recognition with hidden Markov models Proceedings of Spie - the International Society For Optical Engineering. 5367: 661-668. DOI: 10.1117/12.535778  0.55
2004 Zhang X, McLennan G, Huffman EA, Sonka M. Computerized detection of pulmonary nodules using cellular neural networks in CT images Proceedings of Spie - the International Society For Optical Engineering. 5370: 30-41. DOI: 10.1117/12.535556  0.515
2004 Munns S, Bu L, Zhang H, Disterhoft M, Dixon M, Stolpen A, Sonka M, Mahoney L, Ge S. 1113-157 Real-time three-dimensional echocardiography for assessment of left ventricular function in children: A validation study compared with magnetic resonance imaging Journal of the American College of Cardiology. 43: A344. DOI: 10.1016/S0735-1097(04)91456-8  0.487
2004 Olszewski ME, Wahle A, Mitchell SC, Sonka M. Segmentation of intravascular ultrasound images: a machine learning approach mimicking human vision International Congress Series. 1268: 1045-1049. DOI: 10.1016/j.ics.2004.03.252  0.754
2003 Palágyi K, Tschirren J, Sonka M. Quantitative analysis of intrathoracic airway trees: methods and validation. Information Processing in Medical Imaging : Proceedings of the ... Conference. 18: 222-33. PMID 15344460  0.709
2003 Wahle A, Lopez JJ, Pennington EC, Meeks SL, Braddy KC, Fox JM, Brennan TM, Buatti JM, Rossen JD, Sonka M. Effects of vessel geometry and catheter position on dose delivery in intracoronary brachytherapy. Ieee Transactions On Bio-Medical Engineering. 50: 1286-95. PMID 14619999 DOI: 10.1109/Tbme.2003.818474  0.334
2003 Yang F, Holzapfel G, Schulze-Bauer C, Stollberger R, Thedens D, Bolinger L, Stolpen A, Sonka M. Segmentation of wall and plaque in in vitro vascular MR images. The International Journal of Cardiovascular Imaging. 19: 419-28. PMID 14609192 DOI: 10.1023/A:1025829232098  0.664
2003 Medina R, Wahle A, Olszewski ME, Sonka M. Three methods for accurate quantification of plaque volume in coronary arteries. The International Journal of Cardiovascular Imaging. 19: 301-11. PMID 14598898 DOI: 10.1023/A:1025470327543  0.73
2003 Hoffman EA, Reinhardt JM, Sonka M, Simon BA, Guo J, Saba O, Chon D, Samrah S, Shikata H, Tschirren J, Palagyi K, Beck KC, McLennan G. Characterization of the interstitial lung diseases via density-based and texture-based analysis of computed tomography images of lung structure and function. Academic Radiology. 10: 1104-18. PMID 14587629 DOI: 10.1016/S1076-6332(03)00330-1  0.72
2003 Sonka M. Rapid and accurate LV surface generation from 3D echocardiography by a catalog based method. The International Journal of Cardiovascular Imaging. 19: 19-21. PMID 12931744 DOI: 10.1023/A:1021723603685  0.328
2003 Coskun AU, Yeghiazarians Y, Kinlay S, Clark ME, Ilegbusi OJ, Wahle A, Sonka M, Popma JJ, Kuntz RE, Feldman CL, Stone PH. Reproducibility of coronary lumen, plaque, and vessel wall reconstruction and of endothelial shear stress measurements in vivo in humans. Catheterization and Cardiovascular Interventions : Official Journal of the Society For Cardiac Angiography & Interventions. 60: 67-78. PMID 12929106 DOI: 10.1002/Ccd.10594  0.385
2003 Stone PH, Coskun AU, Kinlay S, Clark ME, Sonka M, Wahle A, Ilegbusi OJ, Yeghiazarians Y, Popma JJ, Orav J, Kuntz RE, Feldman CL. Effect of endothelial shear stress on the progression of coronary artery disease, vascular remodeling, and in-stent restenosis in humans: in vivo 6-month follow-up study. Circulation. 108: 438-44. PMID 12860915 DOI: 10.1161/01.Cir.0000080882.35274.Ad  0.353
2003 Mitchell SC, Lelieveldt BPF, Bosch HG, Reiber JHC, Sonka M. Disease characterization of active appearance model coefficients Proceedings of Spie - the International Society For Optical Engineering. 5032: 949-957. DOI: 10.1117/12.481145  0.574
2003 Bosch JG, Nijland F, Mitchell SC, Lelieveldt BPF, Kamp O, Sonka M, Reiber JHC. Automated classification of wall motion abnormalities by Principal Component Analysis of endocardial shape motion patterns in echocardiograms Proceedings of Spie - the International Society For Optical Engineering. 5032: 38-49. DOI: 10.1117/12.481135  0.543
2003 Palagyi K, Tschirren J, Sonka M. Quantitative analysis of three-dimensional tubular tree structures Proceedings of Spie - the International Society For Optical Engineering. 5032: 277-287. DOI: 10.1117/12.481127  0.71
2003 Tschirren J, Hoffman EA, McLennan G, Sonka M. Branchpoint labeling and matching in human airway trees Proceedings of Spie - the International Society For Optical Engineering. 5031: 187-194. DOI: 10.1117/12.480692  0.677
2003 BOSCH J, NIJLAND F, MITCHELL S, LELIEVELDT B, KAMP O, SONKA M, REIBER J. 736 Automated classification of wall motion abnormalities by analysis of left ventricular endocardial contour motion patterns European Journal of Echocardiography. 4: S95. DOI: 10.1016/S1525-2167(03)90937-1  0.605
2003 Stone PH, Yeghiazarians Y, Coskun AU, Kinlay S, Clark ME, Sonka M, Wahle A, Ilegbusi OJ, Popma JJ, Orav J, Kuntz RE, Feldman CL. Progression of coronary artery disease, vascular remodeling, and in-stent restenosis in humans as a function of endothelial shear stress: An In-Vivosix-month follow-up study Journal of the American College of Cardiology. 41: 270. DOI: 10.1016/S0735-1097(03)82267-2  0.311
2003 Olszewski ME, Wahle A, Medina R, Mitchell SC, Sonka M. Integrated system for quantitative analysis of coronary plaque via data fusion of biplane angiography and intravascular ultrasound International Congress Series. 1256: 1117-1122. DOI: 10.1016/S0531-5131(03)00277-2  0.751
2003 Sonka M, Bosch JG, Lelieveldt BP, Mitchell SC, Reiber JH. Computer-aided diagnosis via model-based shape analysis: cardiac MR and echo International Congress Series. 1256: 1013-1018. DOI: 10.1016/S0531-5131(03)00261-9  0.509
2002 Sonka M, Liang W, Lauer RM. Automated analysis of brachial ultrasound image sequences: early detection of cardiovascular disease via surrogates of endothelial function. Ieee Transactions On Medical Imaging. 21: 1271-9. PMID 12585709 DOI: 10.1109/Tmi.2002.806288  0.409
2002 Bosch JG, Mitchell SC, Lelieveldt BP, Nijland F, Kamp O, Sonka M, Reiber JH. Automatic segmentation of echocardiographic sequences by active appearance motion models. Ieee Transactions On Medical Imaging. 21: 1374-83. PMID 12575874 DOI: 10.1109/Tmi.2002.806427  0.606
2002 Mitchell SC, Bosch JG, Lelieveldt BP, van der Geest RJ, Reiber JH, Sonka M. 3-D active appearance models: segmentation of cardiac MR and ultrasound images. Ieee Transactions On Medical Imaging. 21: 1167-78. PMID 12564884 DOI: 10.1109/Tmi.2002.804425  0.654
2002 Bosch JG, Mitchell SC, Lelieveldt BPF, Nijland F, Kamp O, Sonka M, Reiber JHC. Fully automated endocardial contour detection in time sequences of echocardiograms by three-dimensional active appearance models Proceedings of Spie - the International Society For Optical Engineering. 4684: 452-462. DOI: 10.1117/12.467187  0.577
2002 Mitchell SC, Lelieveldt BPF, Bosch JG, Van der Geest R, Reiber JHC, Sonka M. Segmentation of cardiac MR volume data using 3D active appearance models Proceedings of Spie - the International Society For Optical Engineering. 4684: 433-443. DOI: 10.1117/12.467185  0.618
2002 Feldman CL, Kinlay S, Coskun AU, Clark ME, Sonka M, Wahle A, Ilegbusi OJ, Popma JJ, Kuntz RE, Stone PH. In-vivo prediction of outward remodeling in native portions of stented coronary arteries associated with sites of high endothelial shear stress at the time of deployment Journal of the American College of Cardiology. 39: 247. DOI: 10.1016/S0735-1097(02)81104-4  0.304
2001 Tschirren J, Lauer RM, Sonka M. Automated analysis of Doppler ultrasound velocity flow diagrams. Ieee Transactions On Medical Imaging. 20: 1422-5. PMID 11811841 DOI: 10.1109/42.974936  0.703
2001 Stefancik RM, Sonka M. Highly automated segmentation of arterial and venous trees from three-dimensional magnetic resonance angiography (MRA). The International Journal of Cardiovascular Imaging. 17: 37-47. PMID 11495507 DOI: 10.1023/A:1010656618835  0.422
2001 Mitchell SC, Lelieveldt BP, van der Geest RJ, Bosch HG, Reiber JH, Sonka M. Multistage hybrid active appearance model matching: segmentation of left and right ventricles in cardiac MR images. Ieee Transactions On Medical Imaging. 20: 415-23. PMID 11403200 DOI: 10.1109/42.925294  0.641
2001 Brejl M, Sonka M. Object localization and border detection criteria design in edge-based image segmentation: automated learning from examples. Ieee Transactions On Medical Imaging. 19: 973-85. PMID 11131495 DOI: 10.1109/42.887613  0.305
2001 Wahle A, Mitchell SC, Ramaswamy SD, Chandran KB, Sonka M. Four-dimensional coronary morphology and computational hemodynamics Proceedings of Spie - the International Society For Optical Engineering. 4322: 743-754. DOI: 10.1117/12.431153  0.605
2001 Bosch HG, Mitchell SC, Lelieveldt BPF, Nijland F, Kamp O, Sonka M, Reiber JHC. Active Appearance-Motion Models for endocardial contour detection in time sequences of echocardiograms Proceedings of Spie - the International Society For Optical Engineering. 4322: 257-268. DOI: 10.1117/12.431095  0.593
2001 Mitchell SC, Lelieveldt BPF, Van der Geest RJ, Bosch HG, Reiber JHC, Sonka M. Time continuous segmentation of cardiac MR image sequences using active appearance motion models Proceedings of Spie - the International Society For Optical Engineering. 4322: 249-256. DOI: 10.1117/12.431094  0.596
2001 Wahle A, Mitchell SC, Ramaswamy SD, Chandran KB, Sonka M. Virtual angioscopy in human coronary arteries with visualization of computational hemodynamics Proceedings of Spie - the International Society For Optical Engineering. 4321: 32-41. DOI: 10.1117/12.428164  0.59
2001 Tschirren J, Lauer RM, Sonka M. Doppler blood velocity assessment based on image analysis of video tape recorded image data Proceedings of Spie - the International Society For Optical Engineering. 4321: 305-311. DOI: 10.1117/12.428150  0.688
2001 Wahle A, Mitchell SC, Olszewski ME, Long RM, Sonka M. Accurate visualization and quantification of coronary vasculature by 3-D/4-D fusion from biplane angiography and intravascular ultrasound Proceedings of Spie - the International Society For Optical Engineering. 4158: 144-155. DOI: 10.1117/12.413790  0.777
2001 Sonka M, Lelieveldt BPF, Mitchell SC, Bosch JG, Van Der Geest RJ, Reiber JHC. Active appearance motion model segmentation Proceedings - 2nd International Workshop On Digital and Computational Video, Dcv 2001. 64-68. DOI: 10.1109/DCV.2001.929943  0.591
2001 Lelieveldt BP, Mitchell SC, van der Geest RJ, Bosch HG, Sonka M, Reiber JH. Time continuous segmentation of cardiac MR images using Active Appearance Motion Models International Congress Series. 1230: 961-966. DOI: 10.1016/S0531-5131(01)00162-5  0.561
2001 Bosch HG, Mitchell SC, Lelieveldt BP, Nijland F, Kamp O, Sonka M, Reiber JH. Active Appearance–Motion Models for fully automated endocardial contour detection in time sequences of echocardiograms International Congress Series. 1230: 941-947. DOI: 10.1016/S0531-5131(01)00159-5  0.488
2001 Wahle A, Mitchell SC, Ramaswamy SD, Chandran KB, Sonka M. Visualization of human coronary arteries with quantification results from 3-D and 4-D computational hemodynamics based upon virtual endoscopy International Congress Series. 1230: 923-929. DOI: 10.1016/S0531-5131(01)00156-X  0.565
2000 Olszewski ME, Long RM, Mitchell SC, Wahle A, Sonka M. Quantitative measurements in geometrically correct representations of coronary vessels in 3-D and 4-D Proceedings of the Ieee Southwest Symposium On Image Analysis and Interpretation. 2000: 259-263. DOI: 10.1109/IAI.2000.839611  0.789
2000 Lelieveldt BP, Sonka M, Bolinger L, Scholz TD, Kayser H, van der Geest R, Reiber JH. Anatomical Modeling with Fuzzy Implicit Surface Templates: Application to Automated Localization of the Heart and Lungs in Thoracic MR Volumes Computer Vision and Image Understanding. 80: 1-20. DOI: 10.1006/Cviu.2000.0864  0.371
2000 Goshtasby A, Sonka M, Udupa J. Analysis of Volumetric Images Computer Vision and Image Understanding. 77: 79-83. DOI: 10.1006/Cviu.1999.0819  0.362
2000 Brejl M, Sonka M. Directional 3D Edge Detection in Anisotropic Data: Detector Design and Performance Assessment Computer Vision and Image Understanding. 77: 84-110. DOI: 10.1006/Cviu.1999.0811  0.386
1999 Hoffmann KR, Wahle A, Pellot-Barakat C, Sklansky J, Sonka M. Biplane X-ray angiograms, intravascular ultrasound, and 3D visualization of coronary vessels International Journal of Cardiac Imaging. 15: 495-512. PMID 10768744 DOI: 10.1023/A:1006372704091  0.433
1999 Wahle A, Prause PM, DeJong SC, Sonka M. Geometrically correct 3-D reconstruction of intravascular ultrasound images by fusion with biplane angiography--methods and validation. Ieee Transactions On Medical Imaging. 18: 686-99. PMID 10534051 DOI: 10.1109/42.796282  0.45
1999 Wahle A, Prause GP, von Birgelen C, Erbel R, Sonka M. Fusion of angiography and intravascular ultrasound in vivo: establishing the absolute 3-D frame orientation. Ieee Transactions On Bio-Medical Engineering. 46: 1176-80. PMID 10513120 DOI: 10.1109/10.790492  0.443
1999 Uppaluri R, Hoffman EA, Sonka M, Hartley PG, Hunninghake GW, McLennan G. Computer recognition of regional lung disease patterns. American Journal of Respiratory and Critical Care Medicine. 160: 648-54. PMID 10430742 DOI: 10.1164/Ajrccm.160.2.9804094  0.309
1999 Krivanek A, Sonka M. Ovarian ultrasound image analysis: follicle segmentation. Ieee Transactions On Medical Imaging. 17: 935-44. PMID 10048850 DOI: 10.1109/42.746626  0.419
1999 Uppaluri R, Hoffman EA, Sonka M, Hunninghake GW, McLennan G. Interstitial lung disease: A quantitative study using the adaptive multiple feature method American Journal of Respiratory and Critical Care Medicine. 159: 519-525. PMID 9927367 DOI: 10.1164/Ajrccm.159.2.9707145  0.314
1998 Sonka M, Liang W, Kanani P, Allan J, DeJong S, Kerber R, McKay C. Intracardiac echocardiography: computerized detection of left ventricular borders. International Journal of Cardiac Imaging. 14: 397-411. PMID 10453395 DOI: 10.1023/A:1006114907352  0.385
1998 Duta N, Sonka M. Segmentation and interpretation of MR brain images: An improved active shape model Ieee Transactions On Medical Imaging. 17: 1049-1062. PMID 10048862 DOI: 10.1109/42.746716  0.407
1998 Zhang X, McKay CR, Sonka M. Tissue characterization in intravascular ultrasound images. Ieee Transactions On Medical Imaging. 17: 889-99. PMID 10048846 DOI: 10.1109/42.746622  0.645
1998 Sarty GE, Liang W, Sonka M, Pierson RA. Semiautomated segmentation of ovarian follicular ultrasound images using a knowledge-based algorithm. Ultrasound in Medicine & Biology. 24: 27-42. PMID 9483769 DOI: 10.1016/S0301-5629(97)00213-5  0.398
1997 Prause GP, DeJong SC, McKay CR, Sonka M. Towards a geometrically correct 3-D reconstruction of tortuous coronary arteries based on biplane angiography and intravascular ultrasound. International Journal of Cardiac Imaging. 13: 451-62. PMID 9415847 DOI: 10.1023/A:1005843222820  0.446
1997 Uppaluri R, Mitsa T, Sonka M, Hoffman EA, McLennan G. Quantification of pulmonary emphysema from lung computed tomography images. American Journal of Respiratory and Critical Care Medicine. 156: 248-54. PMID 9230756 DOI: 10.1164/Ajrccm.156.1.9606093  0.33
1997 Sonka M, Reddy GK, Winniford MD, Collins SM. Adaptive approach to accurate analysis of small-diameter vessels in cineangiograms. Ieee Transactions On Medical Imaging. 16: 87-95. PMID 9050411 DOI: 10.1109/42.552058  0.41
1996 Sonka M, Tadikonda SK, Collins SM. Knowledge-based interpretation of MR brain images. Ieee Transactions On Medical Imaging. 15: 443-52. PMID 18215926 DOI: 10.1109/42.511748  0.397
1996 McKay CR, Zhang X, Liang W, DeJong S, Spencer K, Kerber RE, Sonka M. Use of a new semi-automated method to determine regional left ventricular wall thickening from intracardiac ultrasound images Journal of the American College of Cardiology. 27: 240. DOI: 10.1016/S0735-1097(96)81833-X  0.366
1996 Ma C, Sonka M. A Fully Parallel 3D Thinning Algorithm and Its Applications Computer Vision and Image Understanding. 64: 420-433. DOI: 10.1006/Cviu.1996.0069  0.314
1995 Sonka M, Zhang X, Siebes M, Bissing MS, Dejong SC, Collins SM, McKay CR. Segmentation of intravascular ultrasound images: a knowledge-based approach. Ieee Transactions On Medical Imaging. 14: 719-32. PMID 18215876 DOI: 10.1109/42.476113  0.646
1994 Sonka M, Winniford MD, Zhang X, Collins SM. Lumen centerline detection in complex coronary angiograms. Ieee Transactions On Bio-Medical Engineering. 41: 520-8. PMID 7927371 DOI: 10.1109/10.293239  0.599
1993 Sonka M, Wilbricht CJ, Fleagle SR, Tadikonda SK, Winniford MD, Collins SM. Simultaneous detection of both coronary borders. Ieee Transactions On Medical Imaging. 12: 588-99. PMID 18218453 DOI: 10.1109/42.241888  0.43
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