| Year |
Citation |
Score |
| 2023 |
Esteves MAC, Viana AS, Viçosa GN, Botelho AMN, Moustafa AM, Mansoldo FRP, Ferreira ALP, Vermelho AB, Ferreira-Carvalho BT, Planet PJ, Figueiredo AMS. RdJ detection tests to identify a unique MRSA clone of ST105-SCCII lineage and its variants disseminated in the metropolitan region of Rio de Janeiro. Frontiers in Microbiology. 14: 1275918. PMID 38053559 DOI: 10.3389/fmicb.2023.1275918 |
0.71 |
|
| 2023 |
Martini CL, Silva DNS, Viana AS, Planet PJ, Figueiredo AMS, Ferreira-Carvalho BT. Lineage ST62/87: The International Spread of This Potentially Invasive Lineage. Antibiotics (Basel, Switzerland). 12. PMID 37887231 DOI: 10.3390/antibiotics12101530 |
0.3 |
|
| 2023 |
Pitcher NJ, Feder A, Bolden N, Zirbes CF, Pamatmat AJ, Boyken L, Hill JJ, Bartels AR, Thurman AL, Reeb VC, Porterfield HS, Moustafa AM, Planet PJ, Fischer AJ. Parallel evolution of linezolid-resistant in patients with cystic fibrosis. Microbiology Spectrum. e0208423. PMID 37724867 DOI: 10.1128/spectrum.02084-23 |
0.684 |
|
| 2023 |
Morreale DP, Porsch EA, Kern BK, St Geme JW, Planet PJ. Acquisition, co-option, and duplication of the rtx toxin system and the emergence of virulence in Kingella. Nature Communications. 14: 4281. PMID 37460464 DOI: 10.1038/s41467-023-39939-8 |
0.336 |
|
| 2023 |
Martínez JRW, Planet PJ, Spencer-Sandino M, Rivas L, Díaz L, Moustafa AM, Quesille-Villalobos A, Riquelme-Neira R, Alcalde-Rico M, Hanson B, Carvajal LP, Rincón S, Reyes J, Lam M, Calderon JF, et al. Dynamics of the MRSA Population in a Chilean Hospital: a Phylogenomic Analysis (2000-2016). Microbiology Spectrum. e0535122. PMID 37338398 DOI: 10.1128/spectrum.05351-22 |
0.706 |
|
| 2023 |
Martínez JR, Alcalde-Rico M, Jara-Videla E, Rios R, Moustafa AM, Hanson B, Rivas L, Carvajal LP, Rincon S, Diaz L, Reyes J, Quesille-Villalobos A, Riquelme-Neira R, Undurraga EA, Olivares-Pacheco J, ... ... Planet PJ, et al. Heavy Metal Pollution From a Major Earthquake and Tsunami in Chile Is Associated With Geographic Divergence of Clinical Isolates of Methicillin-Resistant in Latin America. Biorxiv : the Preprint Server For Biology. PMID 37293062 DOI: 10.1101/2023.05.18.541300 |
0.67 |
|
| 2023 |
Pitcher NJ, Feder A, Bolden N, Zirbes CF, Pamatmat AJ, Boyken L, Hill JJ, Thurman AL, Reeb VC, Porterfield HS, Moustafa AM, Planet PJ, Fischer AJ. Parallel Evolution of Linezolid Resistant in Patients with Cystic Fibrosis. Biorxiv : the Preprint Server For Biology. PMID 37205485 DOI: 10.1101/2023.05.02.539145 |
0.657 |
|
| 2023 |
Bianco CM, Moustafa AM, O'Brien K, Martin MA, Read TD, Kreiswirth BN, Planet PJ. Pre-epidemic evolution of the MRSA USA300 clade and a molecular key for classification. Frontiers in Cellular and Infection Microbiology. 13: 1081070. PMID 36761897 DOI: 10.3389/fcimb.2023.1081070 |
0.703 |
|
| 2022 |
Viana AS, Botelho AMN, Feder A, Moustafa AM, Santos Silva DN, Martini CL, Ferreira ALP, Silva-Carvalho MC, Ferreira-Carvalho BT, Planet PJ, Sá Figueiredo AM. High frequency of increased triclosan MIC among CC5 MRSA and risk of misclassification of the SCCmec into types. The Journal of Antimicrobial Chemotherapy. PMID 36173394 DOI: 10.1093/jac/dkac322 |
0.644 |
|
| 2022 |
Marques AD, Sherrill-Mix S, Everett JK, Reddy S, Hokama P, Roche AM, Hwang Y, Glascock A, Whiteside SA, Graham-Wooten J, Khatib LA, Fitzgerald AS, Moustafa AM, Bianco C, Rajagopal S, ... ... Planet PJ, et al. SARS-CoV-2 Variants Associated with Vaccine Breakthrough in the Delaware Valley through Summer 2021. Mbio. e0378821. PMID 35130727 DOI: 10.1128/mbio.03788-21 |
0.65 |
|
| 2021 |
Miller JJ, Shah IT, Hatten J, Barekatain Y, Mueller EA, Moustafa AM, Edwards RL, Dowd CS, Hoops GC, Johnson RJ, Planet P, Muller FL, Jez J, Odom John AR. Correction: Structure-guided microbial targeting of antistaphylococcal prodrugs. Elife. 10. PMID 34821554 DOI: 10.7554/eLife.75743 |
0.613 |
|
| 2021 |
Marques AD, Sherrill-Mix S, Everett J, Reddy S, Hokama P, Roche AM, Hwang Y, Glascock A, Whiteside SA, Graham-Wooten J, Khatib LA, Fitzgerald AS, Moustafa AM, Bianco C, Rajagopal S, ... ... Planet PJ, et al. SARS-CoV-2 variants associated with vaccine breakthrough in the Delaware Valley through summer 2021. Medrxiv : the Preprint Server For Health Sciences. PMID 34704098 DOI: 10.1101/2021.10.18.21264623 |
0.653 |
|
| 2021 |
Viana AS, Nunes Botelho AM, Moustafa AM, Boge CLK, Pires Ferreira AL, da Silva Carvalho MC, Guimarães MA, Costa BSS, de Mattos MC, Maciel SP, Echevarria-Lima J, Narechania A, O'Brien K, Ryan C, Gerber JS, ... ... Planet PJ, et al. Multidrug-Resistant Methicillin-Resistant Staphylococcus aureus Associated with Bacteremia and Monocyte Evasion, Rio de Janeiro, Brazil. Emerging Infectious Diseases. 27: 2825-2835. PMID 34670645 DOI: 10.3201/eid2711.210097 |
0.705 |
|
| 2021 |
Saenkham-Huntsinger P, Hyre AN, Hanson BS, Donati GL, Adams LG, Ryan C, Londoño A, Moustafa AM, Planet PJ, Subashchandrabose S. Copper Resistance Promotes Fitness of Methicillin-Resistant Staphylococcus aureus during Urinary Tract Infection. Mbio. e0203821. PMID 34488457 DOI: 10.1128/mBio.02038-21 |
0.676 |
|
| 2021 |
Moustafa AM, Planet PJ. Emerging SARS-CoV-2 Diversity Revealed by Rapid Whole-Genome Sequence Typing. Genome Biology and Evolution. 13. PMID 34432021 DOI: 10.1093/gbe/evab197 |
0.69 |
|
| 2021 |
Moustafa AM, Planet PJ. Jumping a Moving Train: SARS-CoV-2 Evolution in Real Time. Journal of the Pediatric Infectious Diseases Society. PMID 34370041 DOI: 10.1093/jpids/piab051 |
0.677 |
|
| 2021 |
Miller JJ, Shah IT, Hatten J, Barekatain Y, Mueller EA, Moustafa AM, Edwards RL, Dowd CS, Planet P, Muller FL, Jez J, Odom John AR. Structure-guided microbial targeting of antistaphylococcal prodrugs. Elife. 10. PMID 34279224 DOI: 10.7554/eLife.66657 |
0.656 |
|
| 2021 |
Moustafa AM, Bianco C, Denu L, Ahmed A, Coffin SE, Neide B, Everett J, Reddy S, Rabut E, Deseignora J, Feldman MD, Rodino KG, Bushman F, Harris RM, Chang Mell J, ... Planet PJ, et al. Comparative Analysis of Emerging B.1.1.7+E484K SARS-CoV-2 Isolates. Open Forum Infectious Diseases. 8: ofab300. PMID 34254040 DOI: 10.1093/ofid/ofab300 |
0.665 |
|
| 2021 |
Moustafa AM, Bianco C, Denu L, Ahmed A, Neide B, Everett J, Reddy S, Rabut E, Deseignora J, Feldman MD, Rodino KG, Bushman F, Harris RM, Mell JC, Planet PJ. Comparative Analysis of Emerging B.1.1.7+E484K SARS-CoV-2 isolates from Pennsylvania. Biorxiv : the Preprint Server For Biology. PMID 33907751 DOI: 10.1101/2021.04.21.440801 |
0.697 |
|
| 2021 |
Perelman SS, James DBA, Boguslawski KM, Nelson CW, Ilmain JK, Zwack EE, Prescott RA, Mohamed A, Tam K, Chan R, Narechania A, Pawline MB, Vozhilla N, Moustafa AM, Kim SY, ... ... Planet PJ, et al. Genetic variation of staphylococcal LukAB toxin determines receptor tropism. Nature Microbiology. PMID 33875847 DOI: 10.1038/s41564-021-00890-3 |
0.684 |
|
| 2021 |
Moustafa AM, Velusamy SK, Denu L, Narechania A, Fine DH, Planet PJ. Adaptation by Ancient Horizontal Acquisition of Butyrate Metabolism Genes in Aggregatibacter actinomycetemcomitans. Mbio. 12. PMID 33758084 DOI: 10.1128/mBio.03581-20 |
0.707 |
|
| 2021 |
Penna B, Silva MB, Soares AER, Vasconcelos ATR, Ramundo MS, Ferreira FA, Silva-Carvalho MC, de Sousa VS, Rabello RF, Bandeira PT, de Souza VS, Planet PJ, Vieira-da-Motta O, Botelho AMN, Figueiredo AMS. Comparative genomics of MRSA strains from human and canine origins reveals similar virulence gene repertoire. Scientific Reports. 11: 4724. PMID 33633263 DOI: 10.1038/s41598-021-83993-5 |
0.324 |
|
| 2021 |
Moustafa AM, Otto W, Gai X, Pandey U, Ryutov A, Bootwalla M, Maglinte DT, Shen L, Ruble D, Ostrow D, Gerber JS, Bard JD, Harris RM, Planet PJ. Early pandemic molecular diversity of SARS-CoV-2 in children. Medrxiv : the Preprint Server For Health Sciences. PMID 33619507 DOI: 10.1101/2021.02.17.21251960 |
0.622 |
|
| 2020 |
Moustafa AM, Planet PJ. Emerging SARS-CoV-2 diversity revealed by rapid whole genome sequence typing. Biorxiv : the Preprint Server For Biology. PMID 33398274 DOI: 10.1101/2020.12.28.424582 |
0.69 |
|
| 2020 |
Peignier A, Planet PJ, Parker D. Differential induction of type I and III interferons by . Infection and Immunity. PMID 32690637 DOI: 10.1128/Iai.00352-20 |
0.327 |
|
| 2020 |
Moustafa AM, Lal A, Planet PJ. Comparative genomics in infectious disease. Current Opinion in Microbiology. 53: 61-70. PMID 32248056 DOI: 10.1016/J.Mib.2020.02.009 |
0.708 |
|
| 2020 |
Rios R, Reyes J, Carvajal LP, Rincon S, Panesso D, Echeverri AM, Dinh A, Kolokotronis SO, Narechania A, Tran TT, Munita JM, Murray BE, Planet PJ, Arias CA, Diaz L. Genomic Epidemiology of Vancomycin-Resistant Enterococcus faecium (VREfm) in Latin America: Revisiting The Global VRE Population Structure. Scientific Reports. 10: 5636. PMID 32221315 DOI: 10.1038/S41598-020-62371-7 |
0.38 |
|
| 2020 |
Moustafa AM, Planet PJ. WhatsGNU: a tool for identifying proteomic novelty. Genome Biology. 21: 58. PMID 32138767 DOI: 10.1186/S13059-020-01965-W |
0.716 |
|
| 2019 |
Khan A, Davlieva M, Panesso D, Rincon S, Miller WR, Diaz L, Reyes J, Cruz MR, Pemberton O, Nguyen AH, Siegel SD, Planet PJ, Narechania A, Latorre M, Rios R, et al. Antimicrobial sensing coupled with cell membrane remodeling mediates antibiotic resistance and virulence in . Proceedings of the National Academy of Sciences of the United States of America. PMID 31818937 DOI: 10.1073/Pnas.1916037116 |
0.334 |
|
| 2019 |
Bouso JM, Planet PJ. Complete nontuberculous mycobacteria whole genomes using an optimized DNA extraction protocol for long-read sequencing. Bmc Genomics. 20: 793. PMID 31666009 DOI: 10.1186/S12864-019-6134-Y |
0.356 |
|
| 2019 |
Hlavaty SI, Chang YM, Orth RP, Goulian M, Planet PJ, Thamm DH, Punt JA, Garden OA. Bacterial Killing Activity of Polymorphonuclear Myeloid-Derived Suppressor Cells Isolated From Tumor-Bearing Dogs. Frontiers in Immunology. 10: 2371. PMID 31649676 DOI: 10.3389/Fimmu.2019.02371 |
0.32 |
|
| 2019 |
Acker KP, Wong Fok Lung T, West E, Craft J, Narechania A, Smith H, O'Brien K, Moustafa AM, Lauren C, Planet PJ, Prince A. Strains of Staphylococcus aureus that Colonize and Infect Skin Harbor Mutations in Metabolic Genes. Iscience. 19: 281-290. PMID 31401351 DOI: 10.1016/J.Isci.2019.07.037 |
0.689 |
|
| 2019 |
Planet PJ, Parker D, Ruff NL, Shinefield HR. Revisiting Bacterial Interference in the Age of Methicillin-resistant Staphylococcus aureus: Insights Into Staphylococcus aureus Carriage, Pathogenicity and Potential Control. The Pediatric Infectious Disease Journal. PMID 31274832 DOI: 10.1097/Inf.0000000000002411 |
0.385 |
|
| 2019 |
Riquelme SA, Lozano C, Moustafa AM, Liimatta K, Tomlinson KL, Britto C, Khanal S, Gill SK, Narechania A, Azcona-Gutiérrez JM, DiMango E, Saénz Y, Planet P, Prince A. CFTR-PTEN-dependent mitochondrial metabolic dysfunction promotes airway infection. Science Translational Medicine. 11. PMID 31270271 DOI: 10.1126/Scitranslmed.Aav4634 |
0.673 |
|
| 2019 |
Botelho AMN, Cerqueira E Costa MO, Moustafa AM, Beltrame CO, Ferreira FA, Côrtes MF, Costa BSS, Silva DNS, Bandeira PT, Lima NCB, Souza RC, de Almeida LGP, Vasconcelos ATR, Narechania A, Ryan C, ... ... Planet PJ, et al. Local Diversification of Methicillin- Resistant ST239 in South America After Its Rapid Worldwide Dissemination. Frontiers in Microbiology. 10: 82. PMID 30873127 DOI: 10.3389/Fmicb.2019.00082 |
0.741 |
|
| 2019 |
Copin R, Sause WE, Fulmer Y, Balasubramanian D, Dyzenhaus S, Ahmed JM, Kumar K, Lees J, Stachel A, Fisher JC, Drlica K, Phillips M, Weiser JN, Planet PJ, Uhlemann AC, et al. Sequential evolution of virulence and resistance during clonal spread of community-acquired methicillin-resistant . Proceedings of the National Academy of Sciences of the United States of America. PMID 30635416 DOI: 10.1073/Pnas.1814265116 |
0.392 |
|
| 2019 |
Martínez JRW, Diaz L, Rojas M, Rios R, Hanson B, Rivas LM, Spencer M, Moustafa AM, Araos Bralic R, Peters A, Reyes J, Carvajal LP, Luna C, Salles M, Alvarez C, ... ... Planet PJ, ... ... Planet PJ, et al. 556. Phylogenomic Epidemiology of Methicillin-Resistant Staphylococcus aureus (MRSA) Chilean-Cordobes Clone in Latin America Open Forum Infectious Diseases. 6: S263-S264. DOI: 10.1093/Ofid/Ofz360.625 |
0.732 |
|
| 2018 |
Monteiro da Silva BN, Faria AR, de Souza SDSR, Planet PJ, Merquior VLC, Teixeira LM. Draft Genome Sequence of Enterococcus faecium CL-6729, a Clinical Isolate Showing Constitutive Vancomycin Resistance. Microbiology Resource Announcements. 7. PMID 30533817 DOI: 10.1128/MRA.00888-18 |
0.321 |
|
| 2018 |
Zapotoczna M, Riboldi GP, Moustafa AM, Dickson E, Narechania A, Morrissey JA, Planet PJ, Holden MTG, Waldron KJ, Geoghegan JA. Mobile-Genetic-Element-Encoded Hypertolerance to Copper Protects Staphylococcus aureus from Killing by Host Phagocytes. Mbio. 9. PMID 30327441 DOI: 10.1128/Mbio.00550-18 |
0.716 |
|
| 2018 |
Challagundla L, Reyes J, Rafiqullah I, Sordelli DO, Echaniz-Aviles G, Velazquez-Meza ME, Castillo-Ramírez S, Fittipaldi N, Feldgarden M, Chapman SB, Calderwood MS, Carvajal LP, Rincon S, Hanson B, Planet PJ, et al. Phylogenomic Classification and the Evolution of Clonal Complex 5 Methicillin-Resistant in the Western Hemisphere. Frontiers in Microbiology. 9: 1901. PMID 30186248 DOI: 10.3389/Fmicb.2018.01901 |
0.428 |
|
| 2018 |
Purves J, Thomas J, Riboldi GP, Zapotoczna M, Tarrant E, Andrew PW, Londoño A, Planet PJ, Geoghegan JA, Waldron KJ, Morrissey JA. A horizontally gene transferred copper resistance locus confers hyper-resistance to antibacterial copper toxicity and enables survival of community acquired methicillin resistant Staphylococcus aureus USA300 in macrophages. Environmental Microbiology. PMID 29521441 DOI: 10.1111/1462-2920.14088 |
0.397 |
|
| 2018 |
Challagundla L, Luo X, Tickler IA, Didelot X, Coleman DC, Shore AC, Coombs GW, Sordelli DO, Brown EL, Skov R, Larsen AR, Reyes J, Robledo IE, Vazquez GJ, Rivera R, ... ... Planet PJ, et al. Range Expansion and the Origin of USA300 North American Epidemic Methicillin-Resistant Staphylococcus aureus. Mbio. 9. PMID 29295910 DOI: 10.1128/Mbio.02016-17 |
0.416 |
|
| 2018 |
Rios R, Reyes J, Carvajal LP, Kolokotronis S, Planet P, Narechania A, Munita J, Arias C, Diaz L. 1232. Phylogenomics of Enterococcus faecium From South America: Revisiting Worldwide VRE Population Structure Open Forum Infectious Diseases. 5: S374-S374. DOI: 10.1093/Ofid/Ofy210.1065 |
0.41 |
|
| 2017 |
Rojas LJ, Weinstock GM, De La Cadena E, Diaz L, Rios R, Hanson BM, Brown JS, Vats P, Phillips DS, Nguyen H, Hujer KM, Correa A, Adams MD, Perez F, Sodergren E, ... ... Planet PJ, et al. An Analysis of the Epidemic of KPC-Producing Klebsiella pneumoniae: Convergence of Two Evolutionary Mechanisms Creates the "Perfect Storm". The Journal of Infectious Diseases. PMID 29029188 DOI: 10.1093/Infdis/Jix524 |
0.335 |
|
| 2017 |
Arias CA, Reyes J, Carvajal LP, Rincon S, Diaz L, Panesso D, Ibarra G, Rios R, Munita JM, Salles MJ, Alvarez-Moreno C, Labarca J, Garcia C, Luna CM, Mejia-Villatoro C, ... ... Planet PJ, et al. Molecular Epidemiology and Phylogenomics of Staphylococcus aureus Bacteremia in Latin-America: A Prospective Cohort Multicenter Study in Nine Countries. Antimicrobial Agents and Chemotherapy. PMID 28760895 DOI: 10.1128/Aac.00816-17 |
0.411 |
|
| 2017 |
Planet PJ. Life After USA300: The Rise and Fall of a Superbug. The Journal of Infectious Diseases. 215: S71-S77. PMID 28375517 DOI: 10.1093/Infdis/Jiw444 |
0.349 |
|
| 2016 |
Brown TS, Narechania A, Walker JR, Planet PJ, Bifani PJ, Kolokotronis SO, Kreiswirth BN, Mathema B. Genomic epidemiology of Lineage 4 Mycobacterium tuberculosis subpopulations in New York city and New Jersey, 1999-2009. Bmc Genomics. 17: 947. PMID 27871225 DOI: 10.1186/s12864-016-3298-6 |
0.311 |
|
| 2016 |
Planet PJ, Narechania A, Chen L, Mathema B, Boundy S, Archer G, Kreiswirth B. Architecture of a Species: Phylogenomics of Staphylococcus aureus. Trends in Microbiology. PMID 27751626 DOI: 10.1016/J.Tim.2016.09.009 |
0.453 |
|
| 2016 |
Planet PJ, Parker D, Cohen TS, Smith H, Leon JD, Ryan C, Hammer TJ, Fierer N, Chen EI, Prince AS. Lambda Interferon Restructures the Nasal Microbiome and Increases Susceptibility to Staphylococcus aureus Superinfection. Mbio. 7. PMID 26861017 DOI: 10.1128/Mbio.01939-15 |
0.314 |
|
| 2016 |
Rosenfeld JA, Reeves D, Brugler MR, Narechania A, Simon S, Durrett R, Foox J, Shianna K, Schatz MC, Gandara J, Afshinnekoo E, Lam ET, Hastie AR, Chan S, Cao H, ... ... Planet PJ, et al. Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius. Nature Communications. 7: 10164. PMID 26836631 DOI: 10.1038/Ncomms10164 |
0.36 |
|
| 2015 |
Panesso D, Planet PJ, Diaz L, Hugonnet JE, Tran TT, Narechania A, Munita JM, Rincon S, Carvajal LP, Reyes J, Londoño A, Smith H, Sebra R, Deikus G, Weinstock GM, et al. Methicillin-Susceptible, Vancomycin-Resistant Staphylococcus aureus, Brazil. Emerging Infectious Diseases. 21: 1844-8. PMID 26402569 DOI: 10.3201/Eid2110.141914 |
0.336 |
|
| 2015 |
Planet PJ, Diaz L, Kolokotronis SO, Narechania A, Reyes J, Xing G, Rincon S, Smith H, Panesso D, Ryan C, Smith DP, Guzman M, Zurita J, Sebra R, Deikus G, et al. Parallel Epidemics of Community-Associated Methicillin-Resistant Staphylococcus aureus USA300 Infection in North and South America. The Journal of Infectious Diseases. PMID 26048971 DOI: 10.1093/Infdis/Jiv320 |
0.325 |
|
| 2015 |
Soong G, Paulino F, Wachtel S, Parker D, Wickersham M, Zhang D, Brown A, Lauren C, Dowd M, West E, Horst B, Planet P, Prince A. Methicillin-resistant Staphylococcus aureus adaptation to human keratinocytes. Mbio. 6. PMID 25900653 DOI: 10.1128/Mbio.00289-15 |
0.338 |
|
| 2015 |
Antonov NK, Garzon MC, Morel KD, Whittier S, Planet PJ, Lauren CT. High prevalence of mupirocin resistance in Staphylococcus aureus isolates from a pediatric population. Antimicrobial Agents and Chemotherapy. 59: 3350-6. PMID 25824213 DOI: 10.1128/Aac.00079-15 |
0.345 |
|
| 2015 |
Parker D, Ryan CL, Alonzo F, Torres VJ, Planet PJ, Prince AS. CD4+ T cells promote the pathogenesis of Staphylococcus aureus pneumonia. The Journal of Infectious Diseases. 211: 835-45. PMID 25240171 DOI: 10.1093/Infdis/Jiu525 |
0.321 |
|
| 2015 |
Miller W, Diaz L, Rios R, Reyes J, Smith D, Narechania A, Sebra R, Deikus G, Panesso D, Planet P, Arias C. LiaR-Independent Daptomycin (DAP) Resistance Arises De novo in Enterococcus faecalis but Not in Enterococcus faecium Open Forum Infectious Diseases. 2. DOI: 10.1093/Ofid/Ofv131.159 |
0.301 |
|
| 2015 |
Parker D, Planet P, Cohen T, Smith H, Leon J, Ryan C, Hammer T, Fierer N, Cheng E, Prince A. ID: 248 Cytokine. 76: 111. DOI: 10.1016/J.Cyto.2015.08.251 |
0.307 |
|
| 2014 |
Hooven TA, Randis TM, Daugherty SC, Narechania A, Planet PJ, Tettelin H, Ratner AJ. Complete Genome Sequence of Streptococcus agalactiae CNCTC 10/84, a Hypervirulent Sequence Type 26 Strain. Genome Announcements. 2. PMID 25540350 DOI: 10.1128/Genomea.01338-14 |
0.418 |
|
| 2014 |
Benson MA, Ohneck EA, Ryan C, Alonzo F, Smith H, Narechania A, Kolokotronis SO, Satola SW, Uhlemann AC, Sebra R, Deikus G, Shopsin B, Planet PJ, Torres VJ. Evolution of hypervirulence by a MRSA clone through acquisition of a transposable element. Molecular Microbiology. 93: 664-81. PMID 24962815 DOI: 10.1111/Mmi.12682 |
0.448 |
|
| 2014 |
Rossi F, Diaz L, Wollam A, Panesso D, Zhou Y, Rincon S, Narechania A, Xing G, Di Gioia TS, Doi A, Tran TT, Reyes J, Munita JM, Carvajal LP, Hernandez-Roldan A, ... ... Planet PJ, et al. Transferable vancomycin resistance in a community-associated MRSA lineage. The New England Journal of Medicine. 370: 1524-31. PMID 24738669 DOI: 10.1056/Nejmoa1303359 |
0.421 |
|
| 2014 |
Parker D, Narechania A, Sebra R, Deikus G, Larussa S, Ryan C, Smith H, Prince A, Mathema B, Ratner AJ, Kreiswirth B, Planet PJ. Genome Sequence of Bacterial Interference Strain Staphylococcus aureus 502A. Genome Announcements. 2. PMID 24723721 DOI: 10.1128/Genomea.00284-14 |
0.347 |
|
| 2014 |
Parker D, Planet PJ, Soong G, Narechania A, Prince A. Induction of type I interferon signaling determines the relative pathogenicity of Staphylococcus aureus strains. Plos Pathogens. 10: e1003951. PMID 24586160 DOI: 10.1371/Journal.Ppat.1003951 |
0.357 |
|
| 2013 |
Planet PJ, LaRussa SJ, Dana A, Smith H, Xu A, Ryan C, Uhlemann AC, Boundy S, Goldberg J, Narechania A, Kulkarni R, Ratner AJ, Geoghegan JA, Kolokotronis SO, Prince A. Emergence of the epidemic methicillin-resistant Staphylococcus aureus strain USA300 coincides with horizontal transfer of the arginine catabolic mobile element and speG-mediated adaptations for survival on skin. Mbio. 4: e00889-13. PMID 24345744 DOI: 10.1128/Mbio.00889-13 |
0.411 |
|
| 2013 |
Planet PJ, Narechania A, Hymes SR, Gagliardo C, Huard RC, Whittier S, Della-Latta P, Ratner AJ. Bordetella holmesii: initial genomic analysis of an emerging opportunist. Pathogens and Disease. 67: 132-5. PMID 23620158 DOI: 10.1111/2049-632X.12028 |
0.423 |
|
| 2013 |
Planet PJ, Rampersaud R, Hymes SR, Whittier S, Della-Latta PA, Narechania A, Daugherty SC, Santana-Cruz I, Desalle R, Ravel J, Ratner AJ. Genome Sequence of the Human Abscess Isolate Streptococcus intermedius BA1. Genome Announcements. 1. PMID 23405291 DOI: 10.1128/Genomea.00117-12 |
0.406 |
|
| 2012 |
Kulkarni R, Antala S, Wang A, Amaral FE, Rampersaud R, Larussa SJ, Planet PJ, Ratner AJ. Cigarette smoke increases Staphylococcus aureus biofilm formation via oxidative stress. Infection and Immunity. 80: 3804-11. PMID 22890993 DOI: 10.1128/Iai.00689-12 |
0.309 |
|
| 2012 |
Karched M, Furgang D, Planet PJ, DeSalle R, Fine DH. Genome sequence of Aggregatibacter actinomycetemcomitans RHAA1, isolated from a rhesus macaque, an Old World primate. Journal of Bacteriology. 194: 1275-6. PMID 22328766 DOI: 10.1128/Jb.06710-11 |
0.394 |
|
| 2012 |
Perez-Cheeks BA, Planet PJ, Sarkar IN, Clock SA, Xu Q, Figurski DH. The product of tadZ, a new member of the parA/minD superfamily, localizes to a pole in Aggregatibacter actinomycetemcomitans. Molecular Microbiology. 83: 694-711. PMID 22239271 DOI: 10.1111/J.1365-2958.2011.07955.X |
0.716 |
|
| 2012 |
Narechania A, Baker RH, Sit R, Kolokotronis SO, DeSalle R, Planet PJ. Random Addition Concatenation Analysis: a novel approach to the exploration of phylogenomic signal reveals strong agreement between core and shell genomic partitions in the cyanobacteria. Genome Biology and Evolution. 4: 30-43. PMID 22094860 DOI: 10.1093/Gbe/Evr121 |
0.397 |
|
| 2011 |
Kurt Lienau E, DeSalle R, Allard M, Brown EW, Swofford D, Rosenfeld JA, Sarkar IN, Planet PJ. The mega-matrix tree of life: using genome-scale horizontal gene transfer and sequence evolution data as information about the vertical history of life. Cladistics : the International Journal of the Willi Hennig Society. 27: 417-427. PMID 34875790 DOI: 10.1111/j.1096-0031.2010.00337.x |
0.591 |
|
| 2011 |
Rampersaud R, Planet PJ, Randis TM, Kulkarni R, Aguilar JL, Lehrer RI, Ratner AJ. Inerolysin, a cholesterol-dependent cytolysin produced by Lactobacillus iners. Journal of Bacteriology. 193: 1034-41. PMID 21169489 DOI: 10.1128/Jb.00694-10 |
0.323 |
|
| 2011 |
Kurt Lienau E, DeSalle R, Allard M, Brown EW, Swofford D, Rosenfeld JA, Sarkar IN, Planet PJ. The mega-matrix tree of life: Using genome-scale horizontal gene transfer and sequence evolution data as information about the vertical history of life Cladistics. 27: 417-427. DOI: 10.1111/J.1096-0031.2010.00337.X |
0.629 |
|
| 2010 |
Bonaventura MP, Lee EK, Desalle R, Planet PJ. A whole-genome phylogeny of the family Pasteurellaceae. Molecular Phylogenetics and Evolution. 54: 950-6. PMID 19686857 DOI: 10.1016/J.Ympev.2009.08.010 |
0.382 |
|
| 2009 |
Parker D, Soong G, Planet P, Brower J, Ratner AJ, Prince A. The NanA neuraminidase of Streptococcus pneumoniae is involved in biofilm formation. Infection and Immunity. 77: 3722-30. PMID 19564377 DOI: 10.1128/Iai.00228-09 |
0.351 |
|
| 2009 |
Di Bonaventura MP, DeSalle R, Pop M, Nagarajan N, Figurski DH, Fine DH, Kaplan JB, Planet PJ. Complete genome sequence of Aggregatibacter (Haemophilus) aphrophilus NJ8700. Journal of Bacteriology. 191: 4693-4. PMID 19447908 DOI: 10.1128/Jb.00447-09 |
0.681 |
|
| 2008 |
Sarkar IN, Planet PJ, Desalle R. caos software for use in character-based DNA barcoding. Molecular Ecology Resources. 8: 1256-9. PMID 21586014 DOI: 10.1111/J.1755-0998.2008.02235.X |
0.552 |
|
| 2008 |
Clock SA, Planet PJ, Perez BA, Figurski DH. Outer membrane components of the Tad (tight adherence) secreton of Aggregatibacter actinomycetemcomitans. Journal of Bacteriology. 190: 980-90. PMID 18055598 DOI: 10.1128/Jb.01347-07 |
0.755 |
|
| 2007 |
Tomich M, Planet PJ, Figurski DH. The tad locus: postcards from the widespread colonization island. Nature Reviews. Microbiology. 5: 363-75. PMID 17435791 DOI: 10.1038/Nrmicro1636 |
0.686 |
|
| 2006 |
Perez BA, Planet PJ, Kachlany SC, Tomich M, Fine DH, Figurski DH. Genetic analysis of the requirement for flp-2, tadV, and rcpB in Actinobacillus actinomycetemcomitans biofilm formation. Journal of Bacteriology. 188: 6361-75. PMID 16923904 DOI: 10.1128/Jb.00496-06 |
0.79 |
|
| 2006 |
Soong G, Muir A, Gomez MI, Waks J, Reddy B, Planet P, Singh PK, Kaneko Y, Kanetko Y, Wolfgang MC, Hsiao YS, Tong L, Prince A. Bacterial neuraminidase facilitates mucosal infection by participating in biofilm production. The Journal of Clinical Investigation. 116: 2297-2305. PMID 16862214 DOI: 10.1172/Jci27920 |
0.344 |
|
| 2006 |
Lienau EK, DeSalle R, Rosenfeld JA, Planet PJ. Reciprocal illumination in the gene content tree of life. Systematic Biology. 55: 441-53. PMID 16861208 DOI: 10.1080/10635150600697416 |
0.374 |
|
| 2006 |
Planet PJ. Tree disagreement: measuring and testing incongruence in phylogenies. Journal of Biomedical Informatics. 39: 86-102. PMID 16243006 DOI: 10.1016/J.Jbi.2005.08.008 |
0.331 |
|
| 2005 |
Planet PJ, Sarkar IN. mILD: a tool for constructing and analyzing matrices of pairwise phylogenetic character incongruence tests. Bioinformatics (Oxford, England). 21: 4423-4. PMID 16267088 DOI: 10.1093/Bioinformatics/Bti744 |
0.581 |
|
| 2004 |
Rosenfeld JA, Sarkar IN, Planet PJ, Figurski DH, DeSalle R. ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms. Bioinformatics (Oxford, England). 20: 3462-5. PMID 15271781 DOI: 10.1093/Bioinformatics/Bth427 |
0.733 |
|
| 2003 |
Schreiner HC, Sinatra K, Kaplan JB, Furgang D, Kachlany SC, Planet PJ, Perez BA, Figurski DH, Fine DH. Tight-adherence genes of Actinobacillus actinomycetemcomitans are required for virulence in a rat model. Proceedings of the National Academy of Sciences of the United States of America. 100: 7295-300. PMID 12756291 DOI: 10.1073/Pnas.1237223100 |
0.77 |
|
| 2003 |
Planet PJ, Kachlany SC, Fine DH, DeSalle R, Figurski DH. The Widespread Colonization Island of Actinobacillus actinomycetemcomitans. Nature Genetics. 34: 193-8. PMID 12717435 DOI: 10.1038/Ng1154 |
0.69 |
|
| 2002 |
Sarkar IN, Planet PJ, Bael TE, Stanley SE, Siddall M, DeSalle R, Figurski DH. Characteristic attributes in cancer microarrays. Journal of Biomedical Informatics. 35: 111-22. PMID 12474425 DOI: 10.1016/S1532-0464(02)00504-X |
0.733 |
|
| 2002 |
Sarkar IN, Thornton JW, Planet PJ, Figurski DH, Schierwater B, DeSalle R. An automated phylogenetic key for classifying homeoboxes. Molecular Phylogenetics and Evolution. 24: 388-99. PMID 12220982 DOI: 10.1016/S1055-7903(02)00259-2 |
0.734 |
|
| 2001 |
Kachlany SC, Planet PJ, DeSalle R, Fine DH, Figurski DH. Genes for tight adherence of Actinobacillus actinomycetemcomitans: from plaque to plague to pond scum. Trends in Microbiology. 9: 429-37. PMID 11553455 DOI: 10.1016/S0966-842X(01)02161-8 |
0.687 |
|
| 2001 |
Planet PJ, DeSalle R, Siddall M, Bael T, Sarkar IN, Stanley SE. Systematic analysis of DNA microarray data: Ordering and interpreting patterns of gene expression Genome Research. 11: 1149-1155. PMID 11435396 DOI: 10.1101/Gr.187601 |
0.594 |
|
| 2001 |
Kachlany SC, Planet PJ, Desalle R, Fine DH, Figurski DH, Kaplan JB. flp-1, the first representative of a new pilin gene subfamily, is required for non-specific adherence of Actinobacillus actinomycetemcomitans. Molecular Microbiology. 40: 542-54. PMID 11359562 DOI: 10.1046/J.1365-2958.2001.02422.X |
0.687 |
|
| 2001 |
Planet PJ, Kachlany SC, DeSalle R, Figurski DH. Phylogeny of genes for secretion NTPases: identification of the widespread tadA subfamily and development of a diagnostic key for gene classification. Proceedings of the National Academy of Sciences of the United States of America. 98: 2503-8. PMID 11226268 DOI: 10.1073/Pnas.051436598 |
0.68 |
|
| 2000 |
Kachlany SC, Planet PJ, Bhattacharjee MK, Kollia E, DeSalle R, Fine DH, Figurski DH. Nonspecific adherence by Actinobacillus actinomycetemcomitans requires genes widespread in bacteria and archaea. Journal of Bacteriology. 182: 6169-76. PMID 11029439 DOI: 10.1128/Jb.182.21.6169-6176.2000 |
0.708 |
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