Endang M. Septiningsih, Ph.D. - Publications

Affiliations: 
2002 Cornell University, Ithaca, NY, United States 
Area:
Genetics, Molecular Biology, Agronomy Agriculture

66 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Tsakirpaloglou N, Septiningsih EM, Thomson MJ. Guidelines for Performing CRISPR/Cas9 Genome Editing for Gene Validation and Trait Improvement in Crops. Plants (Basel, Switzerland). 12. PMID 37896028 DOI: 10.3390/plants12203564  0.601
2023 Bridgeland A, Biswas S, Tsakirpaloglou N, Thomson MJ, Septiningsih EM. Optimization of gene editing in cowpea through protoplast transformation and agroinfiltration by targeting the phytoene desaturase gene. Plos One. 18: e0283837. PMID 37018323 DOI: 10.1371/journal.pone.0283837  0.567
2022 Islam ASMF, Mustahsan W, Tabien R, Awika JM, Septiningsih EM, Thomson MJ. Identifying the Genetic Basis of Mineral Elements in Rice Grain Using Genome-Wide Association Mapping. Genes. 13. PMID 36553597 DOI: 10.3390/genes13122330  0.639
2022 Mondal S, Septiningsih EM, Singh RK, Thomson MJ. Mapping QTLs for Reproductive Stage Salinity Tolerance in Rice Using a Cross between Hasawi and BRRI dhan28. International Journal of Molecular Sciences. 23. PMID 36232678 DOI: 10.3390/ijms231911376  0.634
2022 Thapa R, Tabien RE, Thomson MJ, Septiningsih EM. Genetic factors underlying anaerobic germination in rice: Genome-wide association study and transcriptomic analysis. The Plant Genome. e20261. PMID 36169134 DOI: 10.1002/tpg2.20261  0.658
2022 Biswas S, Bridgeland A, Irum S, Thomson MJ, Septiningsih EM. Optimization of Prime Editing in Rice, Peanut, Chickpea, and Cowpea Protoplasts by Restoration of GFP Activity. International Journal of Molecular Sciences. 23. PMID 36077206 DOI: 10.3390/ijms23179809  0.555
2022 Thomson MJ, Biswas S, Tsakirpaloglou N, Septiningsih EM. Functional Allele Validation by Gene Editing to Leverage the Wealth of Genetic Resources for Crop Improvement. International Journal of Molecular Sciences. 23. PMID 35743007 DOI: 10.3390/ijms23126565  0.645
2022 Biswas S, Ibarra O, Shaphek M, Molina-Risco M, Faion-Molina M, Bellinatti-Della Gracia M, Thomson MJ, Septiningsih EM. Increasing the level of resistant starch in 'Presidio' rice through multiplex CRISPR-Cas9 gene editing of starch branching enzyme genes. The Plant Genome. e20225. PMID 35713092 DOI: 10.1002/tpg2.20225  0.596
2022 Sanchez DL, Samonte SOP, Alpuerto JBB, Croaker PA, Morales KY, Yang Y, Wilson LT, Tabien RE, Yan Z, Thomson MJ, Septiningsih EM. Phenotypic variation and genome-wide association studies of main culm panicle node number, maximum node production rate, and degree-days to heading in rice. Bmc Genomics. 23: 390. PMID 35606708 DOI: 10.1186/s12864-022-08629-y  0.579
2022 Dunbar T, Tsakirpaloglou N, Septiningsih EM, Thomson MJ. Carbon Nanotube-Mediated Plasmid DNA Delivery in Rice Leaves and Seeds. International Journal of Molecular Sciences. 23. PMID 35456898 DOI: 10.3390/ijms23084081  0.537
2022 Biswas S, Wahl NJ, Thomson MJ, Cason JM, McCutchen BF, Septiningsih EM. Optimization of Protoplast Isolation and Transformation for a Pilot Study of Genome Editing in Peanut by Targeting the Allergen Gene . International Journal of Molecular Sciences. 23. PMID 35055026 DOI: 10.3390/ijms23020837  0.564
2021 Molina-Risco M, Ibarra O, Faion-Molina M, Kim B, Septiningsih EM, Thomson MJ. Optimizing -Mediated Transformation and CRISPR-Cas9 Gene Editing in the Rice Variety Presidio. International Journal of Molecular Sciences. 22. PMID 34681568 DOI: 10.3390/ijms222010909  0.563
2021 Liang Y, Tabien RE, Tarpley L, Mohammed AR, Septiningsih EM. Transcriptome profiling of two rice genotypes under mild field drought stress during grain-filling stage. Aob Plants. 13: plab043. PMID 34354811 DOI: 10.1093/aobpla/plab043  0.316
2021 Liang Y, Biswas S, Kim B, Bailey-Serres J, Septiningsih EM. Improved Transformation and Regeneration of Rice: Disruption of as a Test Case via CRISPR-Cas9. International Journal of Molecular Sciences. 22. PMID 34209672 DOI: 10.3390/ijms22136989  0.346
2021 Farber C, Islam ASMF, Septiningsih EM, Thomson MJ, Kurouski D. Non-Invasive Identification of Nutrient Components in Grain. Molecules (Basel, Switzerland). 26. PMID 34073711 DOI: 10.3390/molecules26113124  0.57
2021 Kim B, Piao R, Lee G, Koh E, Lee Y, Woo S, Reflinur, Jiang W, Septiningsih EM, Thomson MJ, Koh HJ. OsCOP1 regulates embryo development and flavonoid biosynthesis in rice (Oryza sativa L.). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 33950284 DOI: 10.1007/s00122-021-03844-9  0.562
2021 Tnani H, Chebotarov D, Thapa R, Ignacio JCI, Israel WK, Quilloy FA, Dixit S, Septiningsih EM, Kretzschmar T. Enriched-GWAS and Transcriptome Analysis to Refine and Characterize a Major QTL for Anaerobic Germination Tolerance in Rice. International Journal of Molecular Sciences. 22. PMID 33923150 DOI: 10.3390/ijms22094445  0.388
2021 Ignacio JCI, Zaidem M, Casal C, Dixit S, Kretzschmar T, Samaniego JM, Mendioro MS, Weigel D, Septiningsih EM. Genetic Mapping by Sequencing More Precisely Detects Loci Responsible for Anaerobic Germination Tolerance in Rice. Plants (Basel, Switzerland). 10. PMID 33917499 DOI: 10.3390/plants10040705  0.492
2020 Schaarschmidt S, Fischer A, Lawas LMF, Alam R, Septiningsih EM, Bailey-Serres J, Jagadish SVK, Huettel B, Hincha DK, Zuther E. Utilizing PacBio Iso-Seq for Novel Transcript and Gene Discovery of Abiotic Stress Responses in L. International Journal of Molecular Sciences. 21. PMID 33142722 DOI: 10.3390/ijms21218148  0.335
2020 Mondal S, Khan MIR, Entila F, Dixit S, Sta Cruz PC, Panna Ali M, Pittendrigh B, Septiningsih EM, Ismail AM. Responses of AG1 and AG2 QTL introgression lines and seed pre-treatment on growth and physiological processes during anaerobic germination of rice under flooding. Scientific Reports. 10: 10214. PMID 32576897 DOI: 10.1038/S41598-020-67240-X  0.348
2020 Singh A, Singh Y, Mahato AK, Jayaswal PK, Singh S, Singh R, Yadav N, Singh AK, Singh PK, Singh R, Kumar R, Septiningsih EM, Balyan HS, Singh NK, Rai V. Allelic sequence variation in the Sub1A, Sub1B and Sub1C genes among diverse rice cultivars and its association with submergence tolerance. Scientific Reports. 10: 8621. PMID 32451398 DOI: 10.1038/S41598-020-65588-8  0.551
2020 Morales KY, Singh N, Perez FA, Ignacio JC, Thapa R, Arbelaez JD, Tabien RE, Famoso A, Wang DR, Septiningsih EM, Shi Y, Kretzschmar T, McCouch SR, Thomson MJ. An improved 7K SNP array, the C7AIR, provides a wealth of validated SNP markers for rice breeding and genetics studies. Plos One. 15: e0232479. PMID 32407369 DOI: 10.1371/Journal.Pone.0232479  0.753
2020 Thapa R, Tabien RE, Thomson MJ, Septiningsih EM. Genome-Wide Association Mapping to Identify Genetic Loci for Cold Tolerance and Cold Recovery During Germination in Rice. Frontiers in Genetics. 11: 22. PMID 32153631 DOI: 10.3389/Fgene.2020.00022  0.683
2020 Ghosal S, Quilloy FA, Casal C, Septiningsih EM, Mendioro MS, Dixit S. Trait-based mapping to identify the genetic factors underlying anaerobic germination of rice: Phenotyping, GXE, and QTL mapping. Bmc Genetics. 21: 6. PMID 31952473 DOI: 10.1186/S12863-020-0808-Y  0.508
2020 Mondal S, Khan MIR, Dixit S, Sta. Cruz PC, Septiningsih EM, Ismail AM. Growth, productivity and grain quality of AG1 and AG2 QTLs introgression lines under flooding in direct-seeded rice system Field Crops Research. 248: 107713. DOI: 10.1016/J.Fcr.2019.107713  0.328
2020 Liang Y, Cason JM, Baring MR, Septiningsih EM. Identification of QTLs associated with Sclerotinia blight resistance in peanut ( Arachis hypogaea L.) Genetic Resources and Crop Evolution. 1-9. DOI: 10.1007/S10722-020-01012-4  0.481
2019 Baltazar MD, Ignacio JCI, Thomson MJ, Ismail AM, Mendioro MS, Septiningsih EM. QTL mapping for tolerance to anaerobic germination in rice from IR64 and the landrace Kharsu 80A. Breeding Science. 69: 227-233. PMID 31481831 DOI: 10.1270/Jsbbs.18159  0.676
2019 Ghosal S, Casal C, Quilloy FA, Septiningsih EM, Mendioro MS, Dixit S. Deciphering Genetics Underlying Stable Anaerobic Germination in Rice: Phenotyping, QTL Identification, and Interaction Analysis. Rice (New York, N.Y.). 12: 50. PMID 31309351 DOI: 10.1186/S12284-019-0305-Y  0.548
2019 Kato Y, Collard BCY, Septiningsih EM, Ismail AM. Increasing flooding tolerance in rice: combining tolerance of submergence and of stagnant flooding. Annals of Botany. PMID 31306479 DOI: 10.1093/Aob/Mcz118  0.395
2018 Chamara BS, Marambe B, Kumar V, Ismail AM, Septiningsih EM, Chauhan BS. Optimizing Sowing and Flooding Depth for Anaerobic Germination-Tolerant Genotypes to Enhance Crop Establishment, Early Growth, and Weed Management in Dry-Seeded Rice ( L.). Frontiers in Plant Science. 9: 1654. PMID 30532759 DOI: 10.3389/Fpls.2018.01654  0.367
2018 Liang Y, Baring MR, Septiningsih EM. Mapping of Quantitative Trait Loci for Yield and Grade Related Traits in Peanut (Arachis hypogaea L.) Using High-Resolution SNP Markers Plant Breeding and Biotechnology. 6: 454-462. DOI: 10.9787/Pbb.2018.6.4.454  0.477
2018 Lal B, Gautam P, Nayak A, Raja R, Shahid M, Tripathi R, Singh S, Septiningsih EM, Ismail AM. Agronomic manipulations can enhance the productivity of anaerobic tolerant rice sown in flooded soils in rainfed areas Field Crops Research. 220: 105-116. DOI: 10.1016/J.Fcr.2016.08.026  0.413
2017 Singh A, Carandang J, Gonzaga ZJC, Collard BCY, Ismail AM, Septiningsih EM. Identification of QTLs for yield and agronomic traits in rice under stagnant flooding conditions. Rice (New York, N.Y.). 10: 15. PMID 28429297 DOI: 10.1186/S12284-017-0154-5  0.376
2017 Singh A, Septiningsih EM, Balyan HS, Singh NK, Rai V. Genetics, Physiological Mechanisms and Breeding of Flood Tolerant Rice (Oryza sativa L.). Plant & Cell Physiology. PMID 28069894 DOI: 10.1093/Pcp/Pcw206  0.484
2017 Liang Y, Baring M, Wang S, Septiningsih EM. Mapping QTLs for Leafspot Resistance in Peanut Using SNP-Based Next-Generation Sequencing Markers Plant Breeding and Biotechnology. 5: 115-122. DOI: 10.9787/Pbb.2017.5.2.115  0.422
2017 Gonzaga ZJC, Carandang J, Singh A, Collard BC, Thomson MJ, Septiningsih EM. Mapping QTLs for submergence tolerance in rice using a population fixed for SUB1A tolerant allele Molecular Breeding. 37. DOI: 10.1007/S11032-017-0637-5  0.692
2016 Wilkins O, Hafemeister C, Plessis A, Holloway-Phillips MM, Pham GM, Nicotra AB, Gregorio GB, Jagadish K, Septiningsih EM, Bonneau R, Purugganan MD. EGRINs (Environmental Gene Regulatory Influence Networks) in Rice That Function in the Response to Water Deficit, High Temperature, and Agricultural Environments. The Plant Cell. PMID 27655842 DOI: 10.1105/Tpc.16.00158  0.318
2016 Rumanti IA, Nugraha Y, Wening RH, Gonzaga ZJC, Suwarno, Nasution A, Kusdiaman D, Septiningsih EM. Development of High-Yielding Rice Varieties Suitable for Swampy Lands in Indonesia Plant Breeding and Biotechnology. 4: 413-425. DOI: 10.9787/Pbb.2016.4.4.413  0.342
2016 Utami DW, Septiningsih EM, Kadir TS, Fatimah FW, Yuriyah SW. Pencarian Alel untuk Identifikasi Gen Ketahanan Penyakit Hawar Daun Bakteri, Xa7 pada Plasma Nutfah Padi Lokal Indonesia Jurnal Agrobiogen. 6: 1. DOI: 10.21082/jbio.v6n1.2010.p1-9  0.469
2016 Gonzaga ZJC, Carandang J, Sanchez DL, Mackill DJ, Septiningsih EM. Mapping additional QTLs from FR13A to increase submergence tolerance in rice beyond SUB1 Euphytica. 1-10. DOI: 10.1007/S10681-016-1636-Z  0.48
2015 Kretzschmar T, Pelayo MA, Trijatmiko KR, Gabunada LF, Alam R, Jimenez R, Mendioro MS, Slamet-Loedin IH, Sreenivasulu N, Bailey-Serres J, Ismail AM, Mackill DJ, Septiningsih EM. A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice. Nature Plants. 1: 15124. PMID 27250677 DOI: 10.1038/Nplants.2015.124  0.434
2015 Plessis A, Hafemeister C, Wilkins O, Gonzaga ZJ, Meyer RS, Pires I, Müller C, Septiningsih EM, Bonneau R, Purugganan M. Multiple abiotic stimuli are integrated in the regulation of rice gene expression under field conditions. Elife. 4. PMID 26609814 DOI: 10.7554/Elife.08411  0.354
2015 Gonzaga ZJ, Aslam K, Septiningsih EM, Collard BC. Evaluation of SSR and SNP Markers for Molecular Breeding in Rice Plant Breeding and Biotechnology. 3: 139-152. DOI: 10.9787/Pbb.2015.3.2.139  0.493
2015 Toledo AMU, Ignacio JCI, Casal C, Gonzaga ZJ, Mendioro MS, Septiningsih EM. Development of Improved Ciherang-Sub1 Having Tolerance to Anaerobic Germination Conditions Plant Breeding and Biotechnology. 3: 77-87. DOI: 10.9787/Pbb.2015.3.2.077  0.304
2015 Kretzschmar T, Pelayo MAF, Trijatmiko KR, Gabunada LFM, Alam R, Jimenez R, Mendioro MS, Slamet-Loedin IH, Sreenivasulu N, Bailey-Serres J, Ismail AM, Mackill DJ, Septiningsih EM. A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice Nature Plants. 1. DOI: 10.1038/nplants.2015.124  0.325
2015 Iftekharuddaula KM, Ahmed HU, Ghosal S, Amin A, Moni ZR, Ray BP, Barman HN, Siddique MA, Collard BCY, Septiningsih EM. Development of early maturing submergence-tolerant rice varieties for Bangladesh Field Crops Research. DOI: 10.1016/J.Fcr.2015.12.001  0.424
2015 Iftekharuddaula KM, Ghosal S, Gonzaga ZJ, Amin A, Barman HN, Yasmeen R, Haque MM, Carandang J, Collard BCY, Septiningsih EM. Allelic diversity of newly characterized submergence-tolerant rice (Oryza sativa L.) germplasm from Bangladesh Genetic Resources and Crop Evolution. DOI: 10.1007/S10722-015-0289-4  0.543
2014 Kato Y, Collard BC, Septiningsih EM, Ismail AM. Physiological analyses of traits associated with tolerance of long-term partial submergence in rice. Aob Plants. 6. PMID 25270231 DOI: 10.1093/Aobpla/Plu058  0.417
2014 Septiningsih EM, Hidayatun N, Sanchez DL, Nugraha Y, Carandang J, Pamplona AM, Collard BCY, Ismail AM, Mackill DJ. Accelerating the development of new submergence tolerant rice varieties: the case of Ciherang-Sub1 and PSB Rc18-Sub1 Euphytica. 202: 259-268. DOI: 10.1007/S10681-014-1287-X  0.422
2014 Baltazar MD, Ignacio JCI, Thomson MJ, Ismail AM, Mendioro MS, Septiningsih EM. QTL mapping for tolerance of anaerobic germination from IR64 and the aus landrace Nanhi using SNP genotyping Euphytica. 197: 251-260. DOI: 10.1007/S10681-014-1064-X  0.692
2013 Septiningsih EM, Ignacio JC, Sendon PM, Sanchez DL, Ismail AM, Mackill DJ. QTL mapping and confirmation for tolerance of anaerobic conditions during germination derived from the rice landrace Ma-Zhan Red. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 126: 1357-66. PMID 23417074 DOI: 10.1007/S00122-013-2057-1  0.546
2012 Iftekharuddaula KM, Salam MA, Newaz MA, Ahmed HU, Collard BC, Septiningsih EM, Sanchez DL, Pamplona AM, Mackill DJ. Comparison of phenotypic versus marker-assisted background selection for the SUB1 QTL during backcrossing in rice. Breeding Science. 62: 216-22. PMID 23226081 DOI: 10.1270/Jsbbs.62.216  0.436
2012 Septiningsih EM, Sanchez DL, Singh N, Sendon PM, Pamplona AM, Heuer S, Mackill DJ. Identifying novel QTLs for submergence tolerance in rice cultivars IR72 and Madabaru. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 124: 867-74. PMID 22083356 DOI: 10.1007/S00122-011-1751-0  0.517
2012 Jagadish SVK, Septiningsih EM, Kohli A, Thomson MJ, Ye C, Redoña E, Kumar A, Gregorio GB, Wassmann R, Ismail AM, Singh RK. Genetic Advances in Adapting Rice to a Rapidly Changing Climate Journal of Agronomy and Crop Science. 198: 360-373. DOI: 10.1111/J.1439-037X.2012.00525.X  0.62
2011 Li ZX, Septiningsih EM, Quilloy-Mercado SM, McNally KL, Mackill DJ. Identification of SUB1A alleles from wild rice Oryza rufipogon Griff Genetic Resources and Crop Evolution. 58: 1237-1242. DOI: 10.1007/S10722-010-9657-2  0.485
2011 Iftekharuddaula KM, Newaz MA, Salam MA, Ahmed HU, Mahbub MAA, Septiningsih EM, Collard BCY, Sanchez DL, Pamplona AM, Mackill DJ. Rapid and high-precision marker assisted backcrossing to introgress the SUB1 QTL into BR11, the rainfed lowland rice mega variety of Bangladesh Euphytica. 178: 83-97. DOI: 10.1007/S10681-010-0272-2  0.529
2010 Singh N, Dang TT, Vergara GV, Pandey DM, Sanchez D, Neeraja CN, Septiningsih EM, Mendioro M, Tecson-Mendoza EM, Ismail AM, Mackill DJ, Heuer S. Molecular marker survey and expression analyses of the rice submergence-tolerance gene SUB1A. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 121: 1441-53. PMID 20652530 DOI: 10.1007/S00122-010-1400-Z  0.469
2010 Angaji SA, Septiningsih EM, Mackill DJ, Ismail AM. QTLs associated with tolerance of flooding during germination in rice (Oryza sativa L.) Euphytica. 172: 159-168. DOI: 10.1007/S10681-009-0014-5  0.551
2009 Septiningsih EM, Pamplona AM, Sanchez DL, Neeraja CN, Vergara GV, Heuer S, Ismail AM, Mackill DJ. Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond. Annals of Botany. 103: 151-60. PMID 18974101 DOI: 10.1093/Aob/Mcn206  0.442
2007 Neeraja CN, Maghirang-Rodriguez R, Pamplona A, Heuer S, Collard BC, Septiningsih EM, Vergara G, Sanchez D, Xu K, Ismail AM, Mackill DJ. A marker-assisted backcross approach for developing submergence-tolerant rice cultivars. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 115: 767-76. PMID 17657470 DOI: 10.1007/S00122-007-0607-0  0.53
2007 Thomson MJ, Septiningsih EM, Suwardjo F, Santoso TJ, Silitonga TS, McCouch SR. Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 114: 559-68. PMID 17136372 DOI: 10.1007/S00122-006-0457-1  0.741
2007 McCouch SR, Sweeney M, Li J, Jiang H, Thomson M, Septiningsih E, Edwards J, Moncada P, Xiao J, Garris A, Tai T, Martinez C, Tohme J, Sugiono M, McClung A, et al. Through the genetic bottleneck: O. rufipogon as a source of trait-enhancing alleles for O. sativa Euphytica. 154: 317-339. DOI: 10.1007/S10681-006-9210-8  0.782
2006 Thomson MJ, Edwards JD, Septiningsih EM, Harrington SE, McCouch SR. Substitution mapping of dth1.1, a flowering-time quantitative trait locus (QTL) associated with transgressive variation in rice, reveals multiple sub-QTL. Genetics. 172: 2501-14. PMID 16452146 DOI: 10.1534/Genetics.105.050500  0.767
2006 Santoso TJ, Utami DW, Septiningsih EM. Analisis Sidik Jari DNA Plasma Nutfah Kedelai Menggunakan Markah SSR Jurnal Agrobiogen. 2: 1. DOI: 10.21082/jbio.v2n1.2006.p1-7  0.376
2003 Septiningsih EM, Trijatmiko KR, Moeljopawiro S, McCouch SR. Identification of quantitative trait loci for grain quality in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 107: 1433-41. PMID 14513216 DOI: 10.1007/S00122-003-1376-Z  0.664
2003 Septiningsih EM, Prasetiyono J, Lubis E, Tai TH, Tjubaryat T, Moeljopawiro S, McCouch SR. Identification of quantitative trait loci for yield and yield components in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 107: 1419-32. PMID 14513215 DOI: 10.1007/S00122-003-1373-2  0.707
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