Jennifer A. Tom, Ph.D. - Publications

Affiliations: 
2011 University of California, Los Angeles, Los Angeles, CA 
Area:
Biostatistics Biology

7/40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Williams J, Bravo HC, Tom J, Paulson JN. : Simulating longitudinal differential abundance for microbiome data. F1000research. 8: 1769. PMID 32148761 DOI: 10.12688/F1000Research.20660.2  0.422
2018 Tom J, Chang D, Wuster A, Mukhyala K, Cuenco K, Cowgill A, Vogel J, Reeder J, Yaspan B, Hunkapiller J, Brauer M, Behrens T, Forrest W, Bhangale T. Enabling genome-wide association testing with multiple diseases and no healthy controls. Gene. PMID 30366082 DOI: 10.1016/J.Gene.2018.10.047  0.316
2018 Haug-Baltzell A, Bhangale TR, Chang D, Dressen A, Yaspan BL, Ortmann W, Brauer MJ, Hunkapiller J, Reeder J, Mukhyala K, Cuenco KT, Tom JA, Cowgill A, Vogel J, Forrest WF, et al. Previously reported placebo-response-associated variants do not predict patient outcomes in inflammatory disease Phase III trial placebo arms. Genes and Immunity. PMID 29550837 DOI: 10.1038/S41435-018-0018-Z  0.325
2017 Tom JA, Reeder J, Forrest WF, Graham RR, Hunkapiller J, Behrens TW, Bhangale TR. Identifying and mitigating batch effects in whole genome sequencing data. Bmc Bioinformatics. 18: 351. PMID 28738841 DOI: 10.1186/S12859-017-1756-Z  0.426
2012 Tom JA, Sinsheimer JS, Suchard MA. Does history repeat itself? Wavelets and the phylodynamics of influenza A. Molecular Biology and Evolution. 29: 1367-77. PMID 22160768 DOI: 10.1093/Molbev/Msr305  0.582
2011 Edo-Matas D, Lemey P, Tom JA, Serna-Bolea C, van den Blink AE, van 't Wout AB, Schuitemaker H, Suchard MA. Impact of CCR5delta32 host genetic background and disease progression on HIV-1 intrahost evolutionary processes: efficient hypothesis testing through hierarchical phylogenetic models. Molecular Biology and Evolution. 28: 1605-16. PMID 21135151 DOI: 10.1093/Molbev/Msq326  0.566
2010 Tom JA, Sinsheimer JS, Suchard MA. Reuse, Recycle, Reweigh: Combating Influenza through Efficient Sequential Bayesian Computation for Massive Data. The Annals of Applied Statistics. 4: 1722-1748. PMID 26681992 DOI: 10.1214/10-Aoas349  0.574
Low-probability matches (unlikely to be authored by this person)
2018 Chang D, Choy D, Bhangale T, Wuster A, Khan Z, Dressen A, Cuenco K, Blanco LR, Arron JR, Wilson M, Pappu R, Yi T, Lafkas D, Staton T, Cai F, ... ... Tom J, et al. A whole genome sequencing association study of severe, uncontrolled asthma European Respiratory Journal. 52. DOI: 10.1183/13993003.Congress-2018.Oa2194  0.298
2018 Mohan V, Radha V, Nguyen TT, Stawiski EW, Pahuja KB, Goldstein LD, Tom J, Anjana RM, Kong-Beltran M, Bhangale T, Jahnavi S, Chandni R, Gayathri V, George P, Zhang N, et al. Comprehensive genomic analysis identifies pathogenic variants in maturity-onset diabetes of the young (MODY) patients in South India. Bmc Medical Genetics. 19: 22. PMID 29439679 DOI: 10.1186/S12881-018-0528-6  0.288
2023 Wall JD, Sathirapongsasuti JF, Gupta R, Rasheed A, Venkatesan R, Belsare S, Menon R, Phalke S, Mittal A, Fang J, Tanneeru D, Deshmukh M, Bassi A, Robinson J, Chaudhary R, ... ... Tom J, et al. South Asian medical cohorts reveal strong founder effects and high rates of homozygosity. Nature Communications. 14: 3377. PMID 37291107 DOI: 10.1038/s41467-023-38766-1  0.267
2018 Dressen A, Abbas AR, Cabanski C, Reeder J, Ramalingam TR, Neighbors M, Bhangale TR, Brauer MJ, Hunkapiller J, Reeder J, Mukhyala K, Cuenco K, Tom J, Cowgill A, Vogel J, et al. Analysis of protein-altering variants in telomerase genes and their association with MUC5B common variant status in patients with idiopathic pulmonary fibrosis: a candidate gene sequencing study. The Lancet. Respiratory Medicine. PMID 29891356 DOI: 10.1016/S2213-2600(18)30135-8  0.25
2018 Skon-Hegg C, Zhang J, Wu X, Sagolla M, Ota N, Wuster A, Tom J, Doran E, Ramamoorthi N, Caplazi P, Monroe J, Lee WP, Behrens TW. LACC1 Regulates TNF and IL-17 in Mouse Models of Arthritis and Inflammation. Journal of Immunology (Baltimore, Md. : 1950). PMID 30510070 DOI: 10.4049/Jimmunol.1800636  0.243
1980 Khoo S, Suharto S, Tom JA, Supraptilah B. Linking data sets: the case of Indonesia's Intercensal Population Surveys. Asian and Pacific Census Forum / East-West Population Institute. 7: 1-2, 9-12. PMID 12311723  0.241
2020 Owen R, Galanter J, Zhu R, Cai F, Tom J, Wynne C, Durk M, Chen L, Kenny J, She G, Vadhavkar S, Hwang O, Chen H. A Phase 1 Study to Evaluate the Safety, Tolerability, and Pharmacokinetics of Inhaled GDC-0214, a JAK1 Inhibitor, as Single- and Multiple-Ascending Doses in Healthy Volunteers The Journal of Allergy and Clinical Immunology. 145. DOI: 10.1016/J.Jaci.2019.12.881  0.201
2022 Chang D, Hunkapiller J, Bhangale T, Reeder J, Mukhyala K, Tom J, Cowgill A, Vogel J, Forrest WF, Khan Z, Stockwell A, McCarthy MI, Staton TL, Olsson J, Holweg CTJ, et al. A whole genome sequencing study of moderate to severe asthma identifies a lung function locus associated with asthma risk. Scientific Reports. 12: 5574. PMID 35368043 DOI: 10.1038/s41598-022-09447-8  0.177
2021 De Leon Corona AG, Chin J, No P, Tom J. The Virulence of Grief in the Pandemic: Bereavement Overload During COVID. The American Journal of Hospice & Palliative Care. 10499091211057094. PMID 34879749 DOI: 10.1177/10499091211057094  0.145
2009 King JJ, Cerynik DL, Blair JA, Harding SP, Tom JA. Surgical outcomes after traumatic open knee dislocation. Knee Surgery, Sports Traumatology, Arthroscopy : Official Journal of the Esska. 17: 1027-32. PMID 19205664 DOI: 10.1007/s00167-009-0721-4  0.111
2003 Robinson WH, Fontoura P, Lee BJ, de Vegvar HE, Tom J, Pedotti R, DiGennaro CD, Mitchell DJ, Fong D, Ho PP, Ruiz PJ, Maverakis E, Stevens DB, Bernard CC, Martin R, et al. Protein microarrays guide tolerizing DNA vaccine treatment of autoimmune encephalomyelitis. Nature Biotechnology. 21: 1033-9. PMID 12910246 DOI: 10.1038/Nbt859  0.109
2021 Tom J, Bao M, Tsai L, Qamra A, Summers D, Carrasco-Triguero M, McBride J, Rosenberger CM, Lin CJF, Stubbings W, Blyth KG, Carratalà J, François B, Benfield T, Haslem D, et al. Prognostic and Predictive Biomarkers in Patients With Coronavirus Disease 2019 Treated With Tocilizumab in a Randomized Controlled Trial. Critical Care Medicine. PMID 34612846 DOI: 10.1097/CCM.0000000000005229  0.103
2004 Palmieri RM, Weltman A, Tom JA, Edwards JE, Saliba EN, Mistry DJ, Ingersoll CD. An experimental knee joint effusion does not affect plasma catecholamine concentration in humans. Neuroscience Letters. 366: 76-9. PMID 15265594 DOI: 10.1016/J.Neulet.2004.05.016  0.093
2012 Vogel JH, Nguyen H, Giovannini R, Ignowski J, Garger S, Salgotra A, Tom J. A new large-scale manufacturing platform for complex biopharmaceuticals. Biotechnology and Bioengineering. 109: 3049-58. PMID 22688835 DOI: 10.1002/Bit.24578  0.088
2004 Palmieri RM, Tom JA, Edwards JE, Weltman A, Saliba EN, Mistry DJ, Ingersoll CD. Arthrogenic muscle response induced by an experimental knee joint effusion is mediated by pre- and post-synaptic spinal mechanisms. Journal of Electromyography and Kinesiology : Official Journal of the International Society of Electrophysiological Kinesiology. 14: 631-40. PMID 15491837 DOI: 10.1016/J.Jelekin.2004.06.002  0.087
1986 Rooke IJ, Bradshaw SD, Langworthy RA, Tom JA. Annual cycle of physiological stress and condition of the silvereye, Zosterops lateralis (Aves) Australian Journal of Zoology. 34: 493-501.  0.085
2022 Marziliano A, Burns E, Pampanini T, Tom J, Ardito S, Ilyas A, Carney MT, Diefenbach MA, Makhnevich A, Sinvani L. The psychosocial health, experiences and needs of older adults and care partners during the first surge of the COVID-19 pandemic: a mixed-methods study. Bmc Geriatrics. 22: 752. PMID 36109714 DOI: 10.1186/s12877-022-03427-3  0.076
2003 Tom JA, Miller MD. Complications in the multiple-ligament-injured knee Operative Techniques in Sports Medicine. 11: 302-311. DOI: 10.1016/S1060-1872(03)00038-8  0.07
2021 Braithwaite IE, Cai F, Tom JA, Galanter JM, Owen RP, Zhu R, Williams M, McGregor AG, Eliahu A, Durk MR, Dengler HS, Zak M, Kenny JR, Wilson ME, Beasley R, et al. Inhaled JAK inhibitor GDC-0214 reduces exhaled nitric oxide in patients with mild asthma: a randomized, controlled, proof-of-activity trial. The Journal of Allergy and Clinical Immunology. PMID 33744327 DOI: 10.1016/j.jaci.2021.02.042  0.068
2005 Palmieri RM, Weltman A, Edwards JE, Tom JA, Saliba EN, Mistry DJ, Ingersoll CD. Pre-synaptic modulation of quadriceps arthrogenic muscle inhibition. Knee Surgery, Sports Traumatology, Arthroscopy : Official Journal of the Esska. 13: 370-6. PMID 15685462 DOI: 10.1007/S00167-004-0547-Z  0.067
2014 Kumar NS, Jakoi AM, Swanson CE, Tom JA. Is formal decompression necessary for parameniscal cysts associated with meniscal tears? The Knee. 21: 501-3. PMID 24332831 DOI: 10.1016/j.knee.2013.11.015  0.063
2007 Frye JL, Johns LD, Tom JA, Ingersoll CD. Blisters on the anterior shin in 3 research subjects after a 1-MHz, 1.5-W/cm , continuous ultrasound treatment: a case series. Journal of Athletic Training. 42: 425-30. PMID 18060000  0.062
2010 Tom JA, Cerynik DL, Lee CM, Lewullis GE, Kumar NS. Anatomical considerations of subcoracoid neurovascular structures in anterior shoulder reconstruction. Clinical Anatomy (New York, N.Y.). 23: 815-20. PMID 20641067 DOI: 10.1002/ca.21025  0.06
2015 Weber M, Wu T, Hanson JE, Alam NM, Solanoy H, Ngu H, Lauffer BE, Lin HH, Dominguez SL, Reeder J, Tom J, Steiner P, Foreman O, Prusky GT, Scearce-Levie K. Cognitive Deficits, Changes in Synaptic Function, and Brain Pathology in a Mouse Model of Normal Aging(1,2,3). Eneuro. 2. PMID 26473169 DOI: 10.1523/ENEURO.0047-15.2015  0.058
2009 Cerynik DL, Lewullis GE, Joves BC, Palmer MP, Tom JA. Outcomes of microfracture in professional basketball players. Knee Surgery, Sports Traumatology, Arthroscopy : Official Journal of the Esska. 17: 1135-9. PMID 19296083 DOI: 10.1007/s00167-009-0765-5  0.054
2002 Tom JA, Rodeo SA. Soft tissue allografts for knee reconstruction in sports medicine. Clinical Orthopaedics and Related Research. 135-56. PMID 12218478  0.051
2014 Tom JA, Mesfin A, Shah MP, Javandel M, Lee DJ, Cerynik DL, Amin NH. Anatomical considerations of the suprascapular nerve in rotator cuff repairs. Anatomy Research International. 2014: 674179. PMID 24724030 DOI: 10.1155/2014/674179  0.042
2008 Cerynik DL, Ewald TJ, Sastry A, Amin NH, Liao JG, Tom JA. Outcomes of isolated glenoid labral injuries in professional baseball pitchers. Clinical Journal of Sport Medicine : Official Journal of the Canadian Academy of Sport Medicine. 18: 255-8. PMID 18469567 DOI: 10.1097/JSM.0b013e318170ae86  0.035
2011 Amin NH, Jakoi A, Katsman A, Harding SP, Tom JA, Cerynik DL. Incidence of orthopedic surgery intervention in a level I urban trauma center with motorcycle trauma. The Journal of Trauma. 71: 948-51. PMID 21768896 DOI: 10.1097/TA.0b013e31821e601d  0.026
1984 Bradshaw SD, Tom JA, Bunn SE. Corticosteroids and control of nasal salt gland function in the lizard Tiliqua rugosa. General and Comparative Endocrinology. 54: 308-13. PMID 6735149 DOI: 10.1016/0016-6480(84)90185-0  0.018
2009 Cerynik DL, Roshon M, Abzug JM, Harding SP, Tom JA. Pelvic fractures in professional cyclists: a report of 3 cases. Sports Health. 1: 265-70. PMID 23015883 DOI: 10.1177/1941738108326704  0.011
2014 Kimball MJ, Kumar NS, Jakoi AM, Tom JA. Subacute superior patellar pole sleeve fracture. American Journal of Orthopedics (Belle Mead, N.J.). 43: 29-32. PMID 24490183  0.01
2014 Tom JA, Kumar NS, Cerynik DL, Mashru R, Parrella MS. Diagnosis and treatment of triceps tendon injuries: a review of the literature. Clinical Journal of Sport Medicine : Official Journal of the Canadian Academy of Sport Medicine. 24: 197-204. PMID 24157465 DOI: 10.1097/JSM.0000000000000010  0.01
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