Daniel X. Keller - Publications

Affiliations: 
Salk Institute for Biological Studies, La Jolla, CA, United States 

12/66 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Colangelo C, Shichkova P, Keller D, Markram H, Ramaswamy S. Cellular, Synaptic and Network Effects of Acetylcholine in the Neocortex. Frontiers in Neural Circuits. 13: 24. PMID 31031601 DOI: 10.3389/Fncir.2019.00024  0.329
2018 Erö C, Gewaltig MO, Keller D, Markram H. A Cell Atlas for the Mouse Brain. Frontiers in Neuroinformatics. 12: 84. PMID 30546301 DOI: 10.3389/Fninf.2018.00084  0.301
2018 Coggan JS, Calì C, Keller D, Agus M, Boges D, Abdellah M, Kare K, Lehväslaiho H, Eilemann S, Jolivet RB, Hadwiger M, Markram H, Schürmann F, Magistretti PJ. A Process for Digitizing and Simulating Biologically Realistic Oligocellular Networks Demonstrated for the Neuro-Glio-Vascular Ensemble. Frontiers in Neuroscience. 12: 664. PMID 30319342 DOI: 10.3389/Fnins.2018.00664  0.338
2018 Coggan JS, Keller D, Calì C, Lehväslaiho H, Markram H, Schürmann F, Magistretti PJ. Norepinephrine stimulates glycogenolysis in astrocytes to fuel neurons with lactate. Plos Computational Biology. 14: e1006392. PMID 30161133 DOI: 10.1371/Journal.Pcbi.1006392  0.311
2016 Sharpee TO, Destexhe A, Kawato M, Sekulić V, Skinner FK, Wójcik DK, Chintaluri C, Cserpán D, Somogyvári Z, Kim JK, Kilpatrick ZP, Bennett MR, Josić K, Elices I, Arroyo D, ... ... Keller D, et al. 25th Annual Computational Neuroscience Meeting: CNS-2016 Bmc Neuroscience. 17: 54. PMID 27534393 DOI: 10.1186/S12868-016-0283-6  0.52
2015 Bartol TM, Keller DX, Kinney JP, Bajaj CL, Harris KM, Sejnowski TJ, Kennedy MB. Computational reconstitution of spine calcium transients from individual proteins. Frontiers in Synaptic Neuroscience. 7: 17. PMID 26500546 DOI: 10.3389/Fnsyn.2015.00017  0.533
2015 Ramaswamy S, Courcol JD, Abdellah M, Adaszewski SR, Antille N, Arsever S, Atenekeng G, Bilgili A, Brukau Y, Chalimourda A, Chindemi G, Delalondre F, Dumusc R, Eilemann S, Gevaert ME, ... ... Keller D, et al. The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex. Frontiers in Neural Circuits. 9: 44. PMID 26500503 DOI: 10.3389/Fncir.2015.00044  0.336
2015 Markram H, Muller E, Ramaswamy S, Reimann MW, Abdellah M, Sanchez CA, Ailamaki A, Alonso-Nanclares L, Antille N, Arsever S, Kahou GA, Berger TK, Bilgili A, Buncic N, Chalimourda A, ... ... Keller D, et al. Reconstruction and Simulation of Neocortical Microcircuitry. Cell. 163: 456-492. PMID 26451489 DOI: 10.1016/J.Cell.2015.09.029  0.323
2015 Keller D, Babai N, Kochubey O, Han Y, Markram H, Schürmann F, Schneggenburger R. An Exclusion Zone for Ca2+ Channels around Docked Vesicles Explains Release Control by Multiple Channels at a CNS Synapse. Plos Computational Biology. 11: e1004253. PMID 25951120 DOI: 10.1371/Journal.Pcbi.1004253  0.309
2015 Halnes G, Mäki-Marttunen T, Pettersen KH, Keller D, Andreassen OA, Einevoll GT. Can ionic diffusion have an effect on extracellular potentials? Bmc Neuroscience. 16. DOI: 10.1186/1471-2202-16-S1-P68  0.316
2008 Lopreore CL, Bartol TM, Coggan JS, Keller DX, Sosinsky GE, Ellisman MH, Sejnowski TJ. Computational modeling of three-dimensional electrodiffusion in biological systems: application to the node of Ranvier. Biophysical Journal. 95: 2624-35. PMID 18556758 DOI: 10.1529/Biophysj.108.132167  0.455
2008 Keller DX, Franks KM, Bartol TM, Sejnowski TJ. Calmodulin activation by calcium transients in the postsynaptic density of dendritic spines. Plos One. 3: e2045. PMID 18446197 DOI: 10.1371/Journal.Pone.0002045  0.538
Low-probability matches (unlikely to be authored by this person)
2016 Halnes G, Mäki-Marttunen T, Keller D, Pettersen KH, Andreassen OA, Einevoll GT. Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue. Plos Computational Biology. 12: e1005193. PMID 27820827 DOI: 10.1371/Journal.Pcbi.1005193  0.297
2018 Lindroos R, Dorst MC, Du K, Filipović M, Keller D, Ketzef M, Kozlov AK, Kumar A, Lindahl M, Nair AG, Pérez-Fernández J, Grillner S, Silberberg G, Hellgren Kotaleski J. Basal Ganglia Neuromodulation Over Multiple Temporal and Structural Scales-Simulations of Direct Pathway MSNs Investigate the Fast Onset of Dopaminergic Effects and Predict the Role of Kv4.2. Frontiers in Neural Circuits. 12: 3. PMID 29467627 DOI: 10.3389/Fncir.2018.00003  0.285
2014 Babai N, Kochubey O, Keller D, Schneggenburger R. An alien divalent ion reveals a major role for Ca²⁺ buffering in controlling slow transmitter release. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 12622-35. PMID 25232102 DOI: 10.1523/Jneurosci.1990-14.2014  0.284
2018 Keller D, Erö C, Markram H. Cell Densities in the Mouse Brain: A Systematic Review. Frontiers in Neuroanatomy. 12: 83. PMID 30405363 DOI: 10.3389/Fnana.2018.00083  0.265
2015 Delattre V, Keller D, Perich M, Markram H, Muller EB. Network-timing-dependent plasticity. Frontiers in Cellular Neuroscience. 9: 220. PMID 26106298 DOI: 10.3389/Fncel.2015.00220  0.262
2020 Abdellah M, Guerrero NR, Lapere S, Coggan JS, Keller D, Coste B, Dagar S, Courcol JD, Markram H, Schürmann F. Interactive visualization and analysis of morphological skeletons of brain vasculature networks with VessMorphoVis. Bioinformatics (Oxford, England). 36: i534-i541. PMID 32657395 DOI: 10.1093/Bioinformatics/Btaa461  0.261
2019 Keller D, Meystre J, Veettil RV, Burri O, Guiet R, Schürmann F, Markram H. A Derived Positional Mapping of Inhibitory Subtypes in the Somatosensory Cortex. Frontiers in Neuroanatomy. 13: 78. PMID 31447655 DOI: 10.3389/Fnana.2019.00078  0.26
2019 Coggan JS, Keller D, Markram H, Schürmann F, Magistretti PJ. Excitation states of metabolic networks predict dose-response fingerprinting and ligand pulse phase signalling. Journal of Theoretical Biology. 487: 110123. PMID 31866398 DOI: 10.1016/J.Jtbi.2019.110123  0.249
2019 Erö C, Gewaltig MO, Keller D, Markram H. Corrigendum: A Cell Atlas for the Mouse Brain. Frontiers in Neuroinformatics. 13: 7. PMID 30837861 DOI: 10.3389/Fninf.2019.00007  0.237
2021 Abdellah M, Foni A, Zisis E, Guerrero NR, Lapere S, Coggan JS, Keller D, Markram H, Schürmann F. Metaball skinning of synthetic astroglial morphologies into realistic mesh models for visual analytics and in silico simulations. Bioinformatics (Oxford, England). 37: i426-i433. PMID 34252950 DOI: 10.1093/bioinformatics/btab280  0.234
2022 Rodarie D, Verasztó C, Roussel Y, Reimann M, Keller D, Ramaswamy S, Markram H, Gewaltig MO. A method to estimate the cellular composition of the mouse brain from heterogeneous datasets. Plos Computational Biology. 18: e1010739. PMID 36542673 DOI: 10.1371/journal.pcbi.1010739  0.203
2021 Zisis E, Keller D, Kanari L, Arnaudon A, Gevaert M, Delemontex T, Coste B, Foni A, Abdellah M, Calì C, Hess K, Magistretti PJ, Schürmann F, Markram H. Digital Reconstruction of the Neuro-Glia-Vascular Architecture. Cerebral Cortex (New York, N.Y. : 1991). PMID 34387659 DOI: 10.1093/cercor/bhab254  0.183
2021 Shichkova P, Coggan JS, Markram H, Keller D. A Standardized Brain Molecular Atlas: A Resource for Systems Modeling and Simulation. Frontiers in Molecular Neuroscience. 14: 604559. PMID 34858137 DOI: 10.3389/fnmol.2021.604559  0.177
2022 Abdellah M, Cantero JJG, Guerrero NR, Foni A, Coggan JS, Calì C, Agus M, Zisis E, Keller D, Hadwiger M, Magistretti PJ, Markram H, Schürmann F. Ultraliser: a framework for creating multiscale, high-fidelity and geometrically realistic 3D models for in silico neuroscience. Briefings in Bioinformatics. PMID 36434788 DOI: 10.1093/bib/bbac491  0.173
2021 Santos JPG, Pajo K, Trpevski D, Stepaniuk A, Eriksson O, Nair AG, Keller D, Hellgren Kotaleski J, Kramer A. A Modular Workflow for Model Building, Analysis, and Parameter Estimation in Systems Biology and Neuroscience. Neuroinformatics. PMID 34709562 DOI: 10.1007/s12021-021-09546-3  0.164
2023 Roussel Y, Verasztó C, Rodarie D, Damart T, Reimann M, Ramaswamy S, Markram H, Keller D. Mapping of morpho-electric features to molecular identity of cortical inhibitory neurons. Plos Computational Biology. 19: e1010058. PMID 36602951 DOI: 10.1371/journal.pcbi.1010058  0.136
2022 Eriksson O, Bhalla US, Blackwell KT, Crook SM, Keller D, Kramer A, Linne ML, Saudargienė A, Wade RC, Hellgren Kotaleski J. Combining hypothesis- and data-driven neuroscience modeling in FAIR workflows. Elife. 11. PMID 35792600 DOI: 10.7554/eLife.69013  0.133
2022 Coggan JS, Keller D, Markram H, Schürmann F, Magistretti PJ. Representing stimulus information in an energy metabolism pathway. Journal of Theoretical Biology. 540: 111090. PMID 35271865 DOI: 10.1016/j.jtbi.2022.111090  0.127
2019 Zarb Y, Weber-Stadlbauer U, Kirschenbaum D, Kindler DR, Richetto J, Keller D, Rademakers R, Dickson DW, Pasch A, Byzova T, Nahar K, Voigt FF, Helmchen F, Boss A, Aguzzi A, et al. Ossified blood vessels in primary familial brain calcification elicit a neurotoxic astrocyte response. Brain : a Journal of Neurology. PMID 30805583 DOI: 10.1093/Brain/Awz032  0.123
2021 Krepl J, Casalegno F, Delattre E, Erö C, Lu H, Keller D, Rodarie D, Markram H, Schürmann F. Supervised Learning With Perceptual Similarity for Multimodal Gene Expression Registration of a Mouse Brain Atlas. Frontiers in Neuroinformatics. 15: 691918. PMID 34393747 DOI: 10.3389/fninf.2021.691918  0.116
2010 Manninen T, Keller DX. Comparison of discrete- and continuous-state stochastic methods to model neuronal signal transduction 2010 Acm International Conference On Bioinformatics and Computational Biology, Acm-Bcb 2010. 394-397. DOI: 10.1145/1854776.1854838  0.114
2023 Keller D, Verasztó C, Markram H. Cell-type-specific densities in mouse somatosensory cortex derived from scRNA-seq and RNA hybridization. Frontiers in Neuroanatomy. 17: 1118170. PMID 37007642 DOI: 10.3389/fnana.2023.1118170  0.111
1995 Keller D. [Pharmacokinetic Simulations for Teaching] Altex. 12: 152-155. PMID 11178430  0.111
2013 Laventie BJ, Potrich C, Atmanène C, Saleh M, Joubert O, Viero G, Bachmeyer C, Antonini V, Mancini I, Cianferani-Sanglier S, Keller D, Colin DA, Bourcier T, Anderluh G, van Dorsselaer A, et al. p-Sulfonato-calix[n]arenes inhibit staphylococcal bicomponent leukotoxins by supramolecular interactions. The Biochemical Journal. 450: 559-71. PMID 23282185 DOI: 10.1042/BJ20121628  0.107
2018 Nanoukon C, Affolabi D, Keller D, Tollo R, Riegel P, Baba-Moussa L, Prévost G. Characterization of Human Type C Enterotoxin Produced by Clinical S. epidermidis Isolates. Toxins. 10. PMID 29584685 DOI: 10.3390/toxins10040139  0.106
2018 Liu X, Roux MJ, Picaud S, Keller D, Sauer A, Heitz P, Prévost G, Gaucher D. Panton-Valentine Leucocidin Proves Direct Neuronal Targeting and Its Early Neuronal and Glial Impacts a Rabbit Retinal Explant Model. Toxins. 10. PMID 30400375 DOI: 10.3390/Toxins10110455  0.102
2021 Logette E, Lorin C, Favreau C, Oshurko E, Coggan JS, Casalegno F, Sy MF, Monney C, Bertschy M, Delattre E, Fonta PA, Krepl J, Schmidt S, Keller D, Kerrien S, et al. A Machine-Generated View of the Role of Blood Glucose Levels in the Severity of COVID-19. Frontiers in Public Health. 9: 695139. PMID 34395368 DOI: 10.3389/fpubh.2021.695139  0.099
2008 Berglund C, Prévost G, Laventie BJ, Keller D, Söderquist B. The genes for Panton Valentine leukocidin (PVL) are conserved in diverse lines of methicillin-resistant and methicillin-susceptible Staphylococcus aureus. Microbes and Infection. 10: 878-84. PMID 18656408 DOI: 10.1016/j.micinf.2008.04.018  0.078
2018 Liu X, Heitz P, Roux M, Keller D, Bourcier T, Sauer A, Prévost G, Gaucher D. Panton-Valentine Leukocidin Colocalizes with Retinal Ganglion and Amacrine Cells and Activates Glial Reactions and Microglial Apoptosis. Scientific Reports. 8: 2953. PMID 29440661 DOI: 10.1038/S41598-018-20590-Z  0.077
2023 Hulsmans M, Schloss MJ, Lee IH, Bapat A, Iwamoto Y, Vinegoni C, Paccalet A, Yamazoe M, Grune J, Pabel S, Momin N, Seung H, Kumowski N, Pulous FE, Keller D, et al. Recruited macrophages elicit atrial fibrillation. Science (New York, N.Y.). 381: 231-239. PMID 37440641 DOI: 10.1126/science.abq3061  0.074
2013 Aslam R, Laventie BJ, Marban C, Prévost G, Keller D, Strub JM, Dorsselaer Av, Haikel Y, Taddei C, Metz-Boutigue MH. Activation of neutrophils by the two-component leukotoxin LukE/D from Staphylococcus aureus: proteomic analysis of the secretions. Journal of Proteome Research. 12: 3667-78. PMID 23834436 DOI: 10.1021/pr400199x  0.073
2016 Marcon M, Keller D, Wurnig MC, Eberhardt C, Weiger M, Eberli D, Boss A. Separation of collagen-bound and porous bone water transverse relaxation in mice: proposal of a multi-step approach. Nmr in Biomedicine. PMID 27116654 DOI: 10.1002/nbm.3533  0.061
2006 Joubert O, Viero G, Keller D, Martinez E, Colin DA, Monteil H, Mourey L, Dalla Serra M, Prévost G. Engineered covalent leucotoxin heterodimers form functional pores: insights into S-F interactions. The Biochemical Journal. 396: 381-9. PMID 16494579 DOI: 10.1042/BJ20051878  0.055
2012 Galy R, Bergeret F, Keller D, Mourey L, Prévost G, Maveyraud L. Crystallization and preliminary crystallographic studies of both components of the staphylococcal LukE-LukD leukotoxin. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 68: 663-7. PMID 22684065 DOI: 10.1107/S1744309112014662  0.048
2017 Simões IN, Vale P, Soker S, Atala A, Keller D, Noiva R, Carvalho S, Peleteiro C, Cabral JM, Eberli D, da Silva CL, Baptista PM. Acellular Urethra Bioscaffold: Decellularization of Whole Urethras for Tissue Engineering Applications. Scientific Reports. 7: 41934. PMID 28165009 DOI: 10.1038/Srep41934  0.047
2006 Viero G, Cunaccia R, Prévost G, Werner S, Monteil H, Keller D, Joubert O, Menestrina G, Dalla Serra M. Homologous versus heterologous interactions in the bicomponent staphylococcal gamma-haemolysin pore. The Biochemical Journal. 394: 217-25. PMID 16241903 DOI: 10.1042/BJ20051210  0.043
2016 Nanoukon C, Argemi X, Sogbo F, Orekan J, Keller D, Affolabi D, Schramm F, Riegel P, Baba-Moussa L, Prévost G. Pathogenic features of clinically significant coagulase-negative staphylococci in hospital and community infections in Benin. International Journal of Medical Microbiology : Ijmm. PMID 27876296 DOI: 10.1016/J.Ijmm.2016.11.001  0.037
2002 Galanter M, Dermatis H, Keller D, Trujillo M. Network therapy for cocaine abuse: use of family and peer supports. The American Journal On Addictions. 11: 161-6. PMID 12028746 DOI: 10.1080/10550490290087938  0.036
2008 Roblin P, Guillet V, Joubert O, Keller D, Erard M, Maveyraud L, Prévost G, Mourey L. A covalent S-F heterodimer of leucotoxin reveals molecular plasticity of beta-barrel pore-forming toxins. Proteins. 71: 485-96. PMID 18214982 DOI: 10.1002/prot.21900  0.036
2004 Guillet V, Keller D, Prévost G, Mourey L. Crystallization and preliminary crystallographic data of a leucotoxin S component from Staphylococcus aureus. Acta Crystallographica. Section D, Biological Crystallography. 60: 310-3. PMID 14747708 DOI: 10.1107/S090744490302910X  0.035
2021 Wurtz M, Ruhland E, Liu X, Namer IJ, Mazzoleni V, Lipsker D, Keller D, Prévost G, Gaucher D. Panton-Valentine Leucocidin of Staphylococcus aureus Induces Oxidative Stress and Neurotransmitter Imbalance in a Retinal Explant Model. Investigative Ophthalmology & Visual Science. 62: 4. PMID 33393970 DOI: 10.1167/iovs.62.1.4  0.034
2014 Attien P, Sina H, Moussaoui W, Zimmermann-Meisse G, Dadié T, Keller D, Riegel P, Edoh V, Kotchoni SO, Djè M, Prévost G, Baba-Moussa L. Mass spectrometry and multiplex antigen assays to assess microbial quality and toxin production of Staphylococcus aureus strains isolated from clinical and food samples. Biomed Research International. 2014: 485620. PMID 24987686 DOI: 10.1155/2014/485620  0.031
2023 Schimmer C, Radacovic D, Keller D, Alhussini K, Meybohm P. [Intraaortic Ballon-pump: Physiology, Indication, Management]. Anasthesiologie, Intensivmedizin, Notfallmedizin, Schmerztherapie : Ains. 58: 282-291. PMID 37192637 DOI: 10.1055/a-1858-9949  0.03
2017 Argemi X, Martin V, Loux V, Dahyot S, Lebeurre J, Guffroy A, Martin M, Velay A, Keller D, Riegel P, Hansmann Y, Paul N, Prévost G. Whole genome sequencing of 7 strains of Staphylococcus lugdunensis allows identification of mobile genetic elements. Genome Biology and Evolution. PMID 28444231 DOI: 10.1093/gbe/evx077  0.029
2020 Thüring M, Knuchel R, Picchetta L, Keller D, Schmidli TS, Provenzano M. The Prognostic Value of Indoleamine-2,3-Dioxygenase Gene Expression in Urine of Prostate Cancer Patients Undergoing Radical Prostatectomy as First Treatment of Choice. Frontiers in Immunology. 11: 1244. PMID 32922383 DOI: 10.3389/fimmu.2020.01244  0.028
2016 Marcon M, Weiger M, Keller D, Wurnig MC, Eberhardt C, Eberli D, Boss A. Magnetization transfer imaging of cortical bone in vivo using a zero echo time sequence in mice at 4.7 T: a feasibility study. Magma (New York, N.Y.). PMID 27384463 DOI: 10.1007/s10334-016-0577-9  0.024
2007 Joubert O, Voegelin J, Guillet V, Tranier S, Werner S, Colin DA, Dalla Serra M, Keller D, Monteil H, Mourey L, Prévost G. Distinction between pore assembly by staphylococcal alpha-toxin versus leukotoxins. Journal of Biomedicine & Biotechnology. 2007: 25935. PMID 17497023 DOI: 10.1155/2007/25935  0.024
2016 Marcon M, Keller D, Wurnig MC, Weiger M, Kenkel D, Eberhardt C, Eberli D, Boss A. Separation of collagen-bound and porous bone-water longitudinal relaxation in mice using a segmented inversion recovery zero-echo-time sequence. Magnetic Resonance in Medicine. PMID 27221236 DOI: 10.1002/mrm.26277  0.023
2018 Argemi X, Nanoukon C, Affolabi D, Keller D, Hansmann Y, Riegel P, Baba-Moussa L, Prévost G. Comparative Genomics and Identification of an Enterotoxin-Bearing Pathogenicity Island, SEPI-1/SECI-1, in Staphylococcus epidermidis Pathogenic Strains. Toxins. 10. PMID 29495323 DOI: 10.3390/Toxins10030093  0.019
2021 Kostromitina M, Keller D, Cavusoglu M, Beloin K. " Restaurant customer satisfaction during the COVID-19 outbreak: An analysis of Yelp review texts and star-ratings. International Journal of Hospitality Management. 98: 103048. PMID 34493888 DOI: 10.1016/j.ijhm.2021.103048  0.018
2005 Joubert O, Keller D, Pinck A, Monteil H, Prévost G. Sensitive and specific detection of staphylococcal epidermolysins A and B in broth cultures by flow cytometry-assisted multiplex immunoassay. Journal of Clinical Microbiology. 43: 1076-80. PMID 15750064 DOI: 10.1128/JCM.43.3.1076-1080.2005  0.016
2013 Sina H, Ahoyo TA, Moussaoui W, Keller D, Bankolé HS, Barogui Y, Stienstra Y, Kotchoni SO, Prévost G, Baba-Moussa L. Variability of antibiotic susceptibility and toxin production of Staphylococcus aureus strains isolated from skin, soft tissue, and bone related infections. Bmc Microbiology. 13: 188. PMID 23924370 DOI: 10.1186/1471-2180-13-188  0.016
2022 Keller D, Morris M, McLaughlin R, Evans D, Joyce M. Ruptured Tubo-Ovarian Pregnancy Presenting at 15 Weeks' Gestation. Case Reports in Emergency Medicine. 2022: 5568711. PMID 35399742 DOI: 10.1155/2022/5568711  0.015
2016 Probst P, Keller D, Steimer J, Gmür E, Haller A, Imoberdorf R, Rühlin M, Gelpke H, Breitenstein S. Early combined parenteral and enteral nutrition for pancreaticoduodenectomy - Retrospective cohort analysis. Annals of Medicine and Surgery (2012). 6: 68-73. PMID 26955477 DOI: 10.1016/j.amsu.2016.02.002  0.01
Hide low-probability matches.