Detlev Arendt - Publications

Affiliations: 
EMBL/University of Heidelberg, Heidelberg, Baden-Württemberg, Germany 

66 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Paganos P, Voronov D, Musser JM, Arendt D, Arnone MI. Single cell RNA sequencing of the larva reveals the blueprint of major cell types and nervous system of a non-chordate deuterostome. Elife. 10. PMID 34821556 DOI: 10.7554/eLife.70416  0.61
2021 Musser JM, Schippers KJ, Nickel M, Mizzon G, Kohn AB, Pape C, Ronchi P, Papadopoulos N, Tarashansky AJ, Hammel JU, Wolf F, Liang C, Hernández-Plaza A, Cantalapiedra CP, Achim K, ... ... Arendt D, et al. Profiling cellular diversity in sponges informs animal cell type and nervous system evolution. Science (New York, N.Y.). 374: 717-723. PMID 34735222 DOI: 10.1126/science.abj2949  0.767
2021 Özpolat BD, Randel N, Williams EA, Bezares-Calderón LA, Andreatta G, Balavoine G, Bertucci PY, Ferrier DEK, Gambi MC, Gazave E, Handberg-Thorsager M, Hardege J, Hird C, Hsieh YW, Hui J, ... ... Arendt D, et al. The Nereid on the rise: Platynereis as a model system. Evodevo. 12: 10. PMID 34579780 DOI: 10.1186/s13227-021-00180-3  0.737
2021 Benito-Gutiérrez È, Gattoni G, Stemmer M, Rohr SD, Schuhmacher LN, Tang J, Marconi A, Jékely G, Arendt D. The dorsoanterior brain of adult amphioxus shares similarities in expression profile and neuronal composition with the vertebrate telencephalon. Bmc Biology. 19: 110. PMID 34020648 DOI: 10.1186/s12915-021-01045-w  0.64
2021 Tarashansky AJ, Musser JM, Khariton M, Li P, Arendt D, Quake SR, Wang B. Mapping single-cell atlases throughout Metazoa unravels cell type evolution. Elife. 10. PMID 33944782 DOI: 10.7554/eLife.66747  0.612
2020 Yuste R, Hawrylycz M, Aalling N, Aguilar-Valles A, Arendt D, Arnedillo RA, Ascoli GA, Bielza C, Bokharaie V, Bergmann TB, Bystron I, Capogna M, Chang Y, Clemens A, de Kock CPJ, et al. A community-based transcriptomics classification and nomenclature of neocortical cell types. Nature Neuroscience. PMID 32839617 DOI: 10.1038/S41593-020-0685-8  0.346
2020 Templin R, Vergara H, Pape C, Meechan K, Zinchenko V, Wanner A, Titze B, Genoud C, Betucci P, Savage E, Machado P, Simakov O, Friedrich R, Schwab Y, Kreshuk A, ... ... Arendt D, et al. Whole Body Integration of Gene Expression and Morphology Using Correlative Volume EM Microscopy and Microanalysis. 26: 1044-1045. DOI: 10.1017/S1431927620016773  0.306
2019 Vopalensky P, Tosches MA, Achim K, Handberg-Thorsager M, Arendt D. From spiral cleavage to bilateral symmetry: the developmental cell lineage of the annelid brain. Bmc Biology. 17: 81. PMID 31640768 DOI: 10.1186/S12915-019-0705-X  0.371
2019 Arendt D, Bertucci PY, Achim K, Musser JM. Evolution of neuronal types and families. Current Opinion in Neurobiology. 56: 144-152. PMID 30826503 DOI: 10.1016/J.Conb.2019.01.022  0.614
2019 Pape C, Matskevych A, Wolny A, Hennies J, Mizzon G, Louveaux M, Musser J, Maizel A, Arendt D, Kreshuk A. Leveraging Domain Knowledge to Improve Microscopy Image Segmentation With Lifted Multicuts Frontiers in Computer Science. 1. DOI: 10.3389/Fcomp.2019.00006  0.596
2018 Chartier TF, Deschamps J, Dürichen W, Jékely G, Arendt D. Whole-head recording of chemosensory activity in the marine annelid . Open Biology. 8. PMID 30381362 DOI: 10.1098/Rsob.180139  0.64
2018 Nielsen C, Brunet T, Arendt D. Evolution of the bilaterian mouth and anus. Nature Ecology & Evolution. 2: 1358-1376. PMID 30135501 DOI: 10.1038/S41559-018-0641-0  0.306
2018 Achim K, Eling N, Vergara HM, Bertucci PY, Musser J, Vopalensky P, Brunet T, Collier P, Benes V, Marioni JC, Arendt D. Whole-body single-cell sequencing reveals transcriptional domains in the annelid larval body. Molecular Biology and Evolution. PMID 29373712 DOI: 10.1093/Molbev/Msx336  0.643
2017 Schlosser G, Musser J, Arendt D. Development and evolution of sensory cells and organs. Developmental Biology. PMID 28889956 DOI: 10.1016/J.Ydbio.2017.09.007  0.614
2017 Musser JM, Arendt D. Loss and gain of cone types in vertebrate ciliary photoreceptor evolution. Developmental Biology. PMID 28882401 DOI: 10.1016/J.Ydbio.2017.08.038  0.629
2017 Vergara HM, Bertucci PY, Hantz P, Tosches MA, Achim K, Vopalensky P, Arendt D. Whole-organism cellular gene-expression atlas reveals conserved cell types in the ventral nerve cord of Platynereis dumerilii. Proceedings of the National Academy of Sciences of the United States of America. 114: 5878-5885. PMID 28584082 DOI: 10.1073/Pnas.1610602114  0.39
2016 Arendt D, Extavour C. Editorial overview: Developmental mechanisms, patterning and evolution: New models for genetics and development - diversity at last. Current Opinion in Genetics & Development. 39: iv-vi. PMID 28314394 DOI: 10.1016/J.Gde.2016.10.003  0.306
2016 Brunet T, Fischer AH, Steinmetz PR, Lauri A, Bertucci P, Arendt D. The evolutionary origin of bilaterian smooth and striated myocytes. Elife. 5. PMID 27906129 DOI: 10.7554/Elife.19607  0.576
2016 Arendt D, Musser JM, Baker CV, Bergman A, Cepko C, Erwin DH, Pavlicev M, Schlosser G, Widder S, Laubichler MD, Wagner GP. The origin and evolution of cell types. Nature Reviews. Genetics. PMID 27818507 DOI: 10.1038/Nrg.2016.127  0.69
2016 Levin M, Anavy L, Cole AG, Winter E, Mostov N, Khair S, Senderovich N, Kovalev E, Silver DH, Feder M, Fernandez-Valverde SL, Nakanishi N, Simmons D, Simakov O, Larsson T, ... ... Arendt D, et al. The mid-developmental transition and the evolution of animal body plans. Nature. PMID 26886793 DOI: 10.1038/Nature16994  0.339
2015 Achim K, Pettit JB, Saraiva LR, Gavriouchkina D, Larsson T, Arendt D, Marioni JC. High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin. Nature Biotechnology. 33: 503-9. PMID 25867922 DOI: 10.1038/Nbt.3209  0.784
2014 Lauri A, Brunet T, Handberg-Thorsager M, Fischer AH, Simakov O, Steinmetz PR, Tomer R, Keller PJ, Arendt D. Development of the annelid axochord: insights into notochord evolution. Science (New York, N.Y.). 345: 1365-8. PMID 25214631 DOI: 10.1126/Science.1253396  0.738
2014 Weigert A, Helm C, Meyer M, Nickel B, Arendt D, Hausdorf B, Santos SR, Halanych KM, Purschke G, Bleidorn C, Struck TH. Illuminating the base of the annelid tree using transcriptomics. Molecular Biology and Evolution. 31: 1391-401. PMID 24567512 DOI: 10.1093/Molbev/Msu080  0.324
2014 Marlow H, Tosches MA, Tomer R, Steinmetz PR, Lauri A, Larsson T, Arendt D. Larval body patterning and apical organs are conserved in animal evolution. Bmc Biology. 12: 7. PMID 24476105 DOI: 10.1186/1741-7007-12-7  0.746
2013 Tosches MA, Arendt D. The bilaterian forebrain: an evolutionary chimaera. Current Opinion in Neurobiology. 23: 1080-9. PMID 24080363 DOI: 10.1016/J.Conb.2013.09.005  0.351
2013 Döring C, Gosda J, Tessmar-Raible K, Hausen H, Arendt D, Purschke G. Evolution of clitellate phaosomes from rhabdomeric photoreceptor cells of polychaetes - a study in the leech Helobdella robusta (Annelida, Sedentaria, Clitellata). Frontiers in Zoology. 10: 52. PMID 24007384 DOI: 10.1186/1742-9994-10-52  0.66
2013 Simakov O, Marletaz F, Cho SJ, Edsinger-Gonzales E, Havlak P, Hellsten U, Kuo DH, Larsson T, Lv J, Arendt D, Savage R, Osoegawa K, de Jong P, Grimwood J, Chapman JA, et al. Insights into bilaterian evolution from three spiralian genomes. Nature. 493: 526-31. PMID 23254933 DOI: 10.1038/Nature11696  0.565
2012 Hui JH, McDougall C, Monteiro AS, Holland PW, Arendt D, Balavoine G, Ferrier DE. Extensive chordate and annelid macrosynteny reveals ancestral homeobox gene organization. Molecular Biology and Evolution. 29: 157-65. PMID 21727239 DOI: 10.1093/Molbev/Msr175  0.349
2011 Creevey CJ, Muller J, Doerks T, Thompson JD, Arendt D, Bork P. Identifying single copy orthologs in Metazoa. Plos Computational Biology. 7: e1002269. PMID 22144877 DOI: 10.1371/Journal.Pcbi.1002269  0.444
2011 Karsenti E, Acinas SG, Bork P, Bowler C, De Vargas C, Raes J, Sullivan M, Arendt D, Benzoni F, Claverie JM, Follows M, Gorsky G, Hingamp P, Iudicone D, Jaillon O, et al. A holistic approach to marine eco-systems biology. Plos Biology. 9: e1001177. PMID 22028628 DOI: 10.1371/Journal.Pbio.1001177  0.443
2011 Steinmetz PR, Kostyuchenko RP, Fischer A, Arendt D. The segmental pattern of otx, gbx, and Hox genes in the annelid Platynereis dumerilii. Evolution & Development. 13: 72-9. PMID 21210944 DOI: 10.1111/J.1525-142X.2010.00457.X  0.576
2010 Steinmetz PR, Urbach R, Posnien N, Eriksson J, Kostyuchenko RP, Brena C, Guy K, Akam M, Bucher G, Arendt D. Six3 demarcates the anterior-most developing brain region in bilaterian animals. Evodevo. 1: 14. PMID 21190549 DOI: 10.1186/2041-9139-1-14  0.609
2010 Tomer R, Denes AS, Tessmar-Raible K, Arendt D. Profiling by image registration reveals common origin of annelid mushroom bodies and vertebrate pallium. Cell. 142: 800-9. PMID 20813265 DOI: 10.1016/J.Cell.2010.07.043  0.777
2010 Dray N, Tessmar-Raible K, Le Gouar M, Vibert L, Christodoulou F, Schipany K, Guillou A, Zantke J, Snyman H, Béhague J, Vervoort M, Arendt D, Balavoine G. Hedgehog signaling regulates segment formation in the annelid Platynereis. Science (New York, N.Y.). 329: 339-42. PMID 20647470 DOI: 10.1126/Science.1188913  0.672
2010 Hasse C, Rebscher N, Reiher W, Sobjinski K, Moerschel E, Beck L, Tessmar-Raible K, Arendt D, Hassel M. Three consecutive generations of nephridia occur during development of Platynereis dumerilii (Annelida, Polychaeta). Developmental Dynamics : An Official Publication of the American Association of Anatomists. 239: 1967-76. PMID 20549733 DOI: 10.1002/Dvdy.22331  0.746
2010 Christodoulou F, Raible F, Tomer R, Simakov O, Trachana K, Klaus S, Snyman H, Hannon GJ, Bork P, Arendt D. Ancient animal microRNAs and the evolution of tissue identity. Nature. 463: 1084-8. PMID 20118916 DOI: 10.1038/Nature08744  0.776
2010 Muller J, Creevey CJ, Thompson JD, Arendt D, Bork P. AQUA: automated quality improvement for multiple sequence alignments. Bioinformatics (Oxford, England). 26: 263-5. PMID 19926669 DOI: 10.1093/Bioinformatics/Btp651  0.444
2009 Hui JH, Raible F, Korchagina N, Dray N, Samain S, Magdelenat G, Jubin C, Segurens B, Balavoine G, Arendt D, Ferrier DE. Features of the ancestral bilaterian inferred from Platynereis dumerilii ParaHox genes. Bmc Biology. 7: 43. PMID 19627570 DOI: 10.1186/1741-7007-7-43  0.695
2009 Egger B, Steinke D, Tarui H, De Mulder K, Arendt D, Borgonie G, Funayama N, Gschwentner R, Hartenstein V, Hobmayer B, Hooge M, Hrouda M, Ishida S, Kobayashi C, Kuales G, et al. To be or not to be a flatworm: the acoel controversy. Plos One. 4: e5502. PMID 19430533 DOI: 10.1371/Journal.Pone.0005502  0.647
2009 Le Gouar M, Tessmar-Raible K, Dray N, Vibert L, Béhague J, Arendt D, Balavoine G. 13-P032 Hedgehog regulates segment formation in the annelid Platynereis Mechanisms of Development. 126: S204. DOI: 10.1016/J.Mod.2009.06.505  0.66
2008 Simionato E, Kerner P, Dray N, Le Gouar M, Ledent V, Arendt D, Vervoort M. atonal- and achaete-scute-related genes in the annelid Platynereis dumerilii: insights into the evolution of neural basic-Helix-Loop-Helix genes. Bmc Evolutionary Biology. 8: 170. PMID 18541016 DOI: 10.1186/1471-2148-8-170  0.389
2008 Arendt D, Denes AS, Jékely G, Tessmar-Raible K. The evolution of nervous system centralization. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 363: 1523-8. PMID 18192182 DOI: 10.1098/Rstb.2007.2242  0.762
2008 Haudry Y, Berube H, Letunic I, Weeber PD, Gagneur J, Girardot C, Kapushesky M, Arendt D, Bork P, Brazma A, Furlong EE, Wittbrodt J, Henrich T. 4DXpress: a database for cross-species expression pattern comparisons. Nucleic Acids Research. 36: D847-53. PMID 17916571 DOI: 10.1093/Nar/Gkm797  0.646
2008 Haudry Y, Ong CK, Ettwiller L, Berube H, Letunic I, Kapushesky M, Weeber PD, Wang X, Gagneur J, Girardot C, Arendt D, Bork P, Brazma A, Furlong E, Wittbrodt J, et al. Comparing and analysing gene expression patterns across animal species using 4DXpress Series On Advances in Bioinformatics and Computational Biology. 6: 373-382.  0.604
2007 Tessmar-Raible K, Raible F, Christodoulou F, Guy K, Rembold M, Hausen H, Arendt D. Conserved sensory-neurosecretory cell types in annelid and fish forebrain: insights into hypothalamus evolution. Cell. 129: 1389-400. PMID 17604726 DOI: 10.1016/J.Cell.2007.04.041  0.76
2007 Rebscher N, Zelada-González F, Banisch TU, Raible F, Arendt D. Vasa unveils a common origin of germ cells and of somatic stem cells from the posterior growth zone in the polychaete Platynereis dumerilii. Developmental Biology. 306: 599-611. PMID 17467683 DOI: 10.1016/J.Ydbio.2007.03.521  0.676
2007 Denes AS, Jékely G, Steinmetz PR, Raible F, Snyman H, Prud'homme B, Ferrier DE, Balavoine G, Arendt D. Molecular architecture of annelid nerve cord supports common origin of nervous system centralization in bilateria. Cell. 129: 277-88. PMID 17448990 DOI: 10.1016/J.Cell.2007.02.040  0.785
2007 Steinmetz PR, Zelada-Gonzáles F, Burgtorf C, Wittbrodt J, Arendt D. Polychaete trunk neuroectoderm converges and extends by mediolateral cell intercalation. Proceedings of the National Academy of Sciences of the United States of America. 104: 2727-32. PMID 17301244 DOI: 10.1073/Pnas.0606589104  0.71
2007 Kulakova M, Bakalenko N, Novikova E, Cook CE, Eliseeva E, Steinmetz PR, Kostyuchenko RP, Dondua A, Arendt D, Akam M, Andreeva T. Hox gene expression in larval development of the polychaetes Nereis virens and Platynereis dumerilii (Annelida, Lophotrochozoa). Development Genes and Evolution. 217: 39-54. PMID 17180685 DOI: 10.1007/S00427-006-0119-Y  0.625
2007 Hui JHL, Kortchagina N, Arendt D, Balavoine G, Ferrier DEK. Duplication of the ribosomal gene cluster in the marine polychaete Platynereis dumerilii correlates with ITS polymorphism Journal of the Marine Biological Association of the United Kingdom. 87: 443-449. DOI: 10.1017/S002531540705566X  0.32
2006 Raible F, Tessmar-Raible K, Arboleda E, Kaller T, Bork P, Arendt D, Arnone MI. Opsins and clusters of sensory G-protein-coupled receptors in the sea urchin genome. Developmental Biology. 300: 461-75. PMID 17067569 DOI: 10.1016/J.Ydbio.2006.08.070  0.76
2006 Kerner P, Zelada González F, Le Gouar M, Ledent V, Arendt D, Vervoort M. The expression of a hunchback ortholog in the polychaete annelid Platynereis dumerilii suggests an ancestral role in mesoderm development and neurogenesis. Development Genes and Evolution. 216: 821-8. PMID 16983541 DOI: 10.1007/S00427-006-0100-9  0.372
2005 Raible F, Tessmar-Raible K, Osoegawa K, Wincker P, Jubin C, Balavoine G, Ferrier D, Benes V, de Jong P, Weissenbach J, Bork P, Arendt D. Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii. Science (New York, N.Y.). 310: 1325-6. PMID 16311335 DOI: 10.1126/Science.1119089  0.776
2005 Tessmar-Raible K, Steinmetz PR, Snyman H, Hassel M, Arendt D. Fluorescent two-color whole mount in situ hybridization in Platynereis dumerilii (Polychaeta, Annelida), an emerging marine molecular model for evolution and development. Biotechniques. 39: 460, 462, 464. PMID 16235555 DOI: 10.2144/000112023  0.758
2005 Fritzsch B, Piatigorsky J, Tessmar-Raible K, Jékely G, Guy K, Raible F, Wittbrodt J, Arendt D. Ancestry of Photic and Mechanic Sensation? Science (New York, N.Y.). 308: 1113-1114. PMID 15908343 DOI: 10.1126/Science.308.5725.1113  0.748
2005 Tessmar-Raible K, Arendt D. New animal models for evolution and development. Genome Biology. 6: 303. PMID 15642111 DOI: 10.1186/Gb-2004-6-1-303  0.66
2004 Arendt D, Tessmar-Raible K, Snyman H, Dorresteijn AW, Wittbrodt J. Ciliary photoreceptors with a vertebrate-type opsin in an invertebrate brain. Science (New York, N.Y.). 306: 869-71. PMID 15514158 DOI: 10.1515/Nf-2005-0106  0.747
2004 Raible F, Arendt D. Metazoan evolution: some animals are more equal than others. Current Biology : Cb. 14: R106-8. PMID 14986636 DOI: 10.1016/J.Cub.2004.01.015  0.676
2003 Prud'homme B, de Rosa R, Arendt D, Julien JF, Pajaziti R, Dorresteijn AW, Adoutte A, Wittbrodt J, Balavoine G. Arthropod-like expression patterns of engrailed and wingless in the annelid Platynereis dumerilii suggest a role in segment formation. Current Biology : Cb. 13: 1876-81. PMID 14588243 DOI: 10.1016/J.Cub.2003.10.006  0.563
2003 Tessmar-Raible K, Arendt D. Emerging systems: between vertebrates and arthropods, the Lophotrochozoa. Current Opinion in Genetics & Development. 13: 331-40. PMID 12888005 DOI: 10.1016/S0959-437X(03)00086-8  0.66
2002 Arendt D, Tessmar K, de Campos-Baptista MI, Dorresteijn A, Wittbrodt J. Development of pigment-cup eyes in the polychaete Platynereis dumerilii and evolutionary conservation of larval eyes in Bilateria. Development (Cambridge, England). 129: 1143-54. PMID 11874910  0.498
2001 Loosli F, Winkler S, Burgtorf C, Wurmbach E, Ansorge W, Henrich T, Grabher C, Arendt D, Carl M, Krone A, Grzebisz E, Wittbrodt J. Medaka eyeless is the key factor linking retinal determination and eye growth. Development (Cambridge, England). 128: 4035-44. PMID 11641226  0.631
2001 Arendt D, Wittbrodt J. Reconstructing the eyes of Urbilateria. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 356: 1545-63. PMID 11604122 DOI: 10.1098/Rstb.2001.0971  0.543
2001 Arendt D, Technau U, Wittbrodt J. Evolution of the bilaterian larval foregut. Nature. 409: 81-5. PMID 11343117 DOI: 10.1038/35051075  0.707
1999 Nübler-Jung K, Arendt D. Dorsoventral axis inversion: Enteropneust anatomy links invertebrates to chordates turned upside down Journal of Zoological Systematics and Evolutionary Research. 37: 93-100. DOI: 10.1046/J.1439-0469.1999.372106.X  0.759
1994 Nübler-Jung K, Arendt D. Is ventral in insects dorsal in vertebrates? - A history of embryological arguments favouring axis inversion in chordate ancestors Roux's Archives of Developmental Biology. 203: 357-366. DOI: 10.1007/BF00188683  0.76
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