| Year |
Citation |
Score |
| 2020 |
Lee KH, Kimmel M. Analysis of two mechanisms of telomere maintenance based on the theory of g-Networks and stochastic automata networks. Bmc Genomics. 21: 587. PMID 32900359 DOI: 10.1186/S12864-020-06937-9 |
0.321 |
|
| 2020 |
Yang G, Bondaruk J, Cogdell D, Wang Z, Lee S, Lee JG, Zhang S, Choi W, Wang Y, Liang Y, Wang G, Wang Y, Yao H, Dadhania V, Gao J, ... ... Kimmel M, et al. Urothelial-to-Neural Plasticity Drives Progression to Small Cell Bladder Cancer. Iscience. 23: 101201. PMID 32521509 DOI: 10.1016/J.Isci.2020.101201 |
0.325 |
|
| 2020 |
Paszek A, Kardyńska M, Bagnall J, Śmieja J, Spiller DG, Widłak P, Kimmel M, Widlak W, Paszek P. Heat shock response regulates stimulus-specificity and sensitivity of the pro-inflammatory NF-κB signalling. Cell Communication and Signaling : Ccs. 18: 77. PMID 32448393 DOI: 10.1186/S12964-020-00583-0 |
0.634 |
|
| 2020 |
Dinh KN, Jaksik R, Kimmel M, Lambert A, Tavaré S. Statistical Inference for the Evolutionary History of Cancer Genomes Statistical Science. 35: 129-144. DOI: 10.1214/19-Sts7561 |
0.401 |
|
| 2019 |
Mura M, Feillet C, Bertolusso R, Delaunay F, Kimmel M. Mathematical modelling reveals unexpected inheritance and variability patterns of cell cycle parameters in mammalian cells. Plos Computational Biology. 15: e1007054. PMID 31158226 DOI: 10.1371/Journal.Pcbi.1007054 |
0.776 |
|
| 2019 |
Wojdyla T, Mehta H, Glaubach T, Bertolusso R, Iwanaszko M, Braun R, Corey SJ, Kimmel M. Mutation, drift and selection in single-driver hematologic malignancy: Example of secondary myelodysplastic syndrome following treatment of inherited neutropenia. Plos Computational Biology. 15: e1006664. PMID 30615612 DOI: 10.1371/Journal.Pcbi.1006664 |
0.774 |
|
| 2018 |
Gorlov IP, Pikielny CW, Frost HR, Her SC, Cole MD, Strohbehn SD, Wallace-Bradley D, Kimmel M, Gorlova OY, Amos CI. Gene characteristics predicting missense, nonsense and frameshift mutations in tumor samples. Bmc Bioinformatics. 19: 430. PMID 30453881 DOI: 10.1186/S12859-018-2455-0 |
0.306 |
|
| 2018 |
Kardyńska M, Paszek A, Śmieja J, Spiller D, Widłak W, White MRH, Paszek P, Kimmel M. Quantitative analysis reveals crosstalk mechanisms of heat shock-induced attenuation of NF-κB signaling at the single cell level. Plos Computational Biology. 14: e1006130. PMID 29708974 DOI: 10.1371/Journal.Pcbi.1006130 |
0.664 |
|
| 2018 |
Ernst PA, Kimmel M, Kurpas M, Zhou Q. Heavy-tailed distributions in branching process models of secondary cancerous tumors Advances in Applied Probability. 50: 99-114. DOI: 10.1017/Apr.2018.73 |
0.362 |
|
| 2017 |
Tanaka N, Patel AA, Tang L, Silver NL, Lindemann A, Takahashi H, Jaksik R, Rao X, Kalu NN, Chen TC, Wang J, Frederick MJ, Johnson FM, Gleber-Netto F, Fu S, ... Kimmel M, et al. Replication stress leading to apoptosis within the S-phase contributes to synergism between vorinostat and AZD1775 in HNSCC harboring high risk TP53 mutation. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 28790110 DOI: 10.1158/1078-0432.Ccr-17-0947 |
0.33 |
|
| 2016 |
Kimmel M, Wojdyła T. Genetic demographic networks: Mathematical model and applications. Theoretical Population Biology. PMID 27378746 DOI: 10.1016/J.Tpb.2016.06.004 |
0.349 |
|
| 2016 |
Saliba J, Zabriskie R, Ghosh R, Powell BC, Hicks S, Kimmel M, Meng Q, Ritter DI, Wheeler DA, Gibbs RA, Tsai FT, Plon SE. Pharmacogenetic characterization of naturally occurring germline NT5C1A variants to chemotherapeutic nucleoside analogs. Pharmacogenetics and Genomics. PMID 26906009 DOI: 10.1097/Fpc.0000000000000208 |
0.597 |
|
| 2015 |
Dolbniak M, Kimmel M, Smieja J. Modeling epigenetic regulation of PRC1 protein accumulation in the cell cycle. Biology Direct. 10: 62. PMID 26458878 DOI: 10.1186/S13062-015-0078-1 |
0.343 |
|
| 2015 |
Osman AA, Neskey DM, Katsonis P, Patel AA, Ward AM, Hsu TK, Hicks SC, McDonald TO, Ow TJ, Alves MO, Pickering CR, Skinner HD, Zhao M, Sturgis EM, Kies MS, ... ... Kimmel M, et al. Evolutionary Action Score of TP53 Coding Variants Is Predictive of Platinum Response in Head and Neck Cancer Patients. Cancer Research. 75: 1205-15. PMID 25691460 DOI: 10.1158/0008-5472.Can-14-2729 |
0.613 |
|
| 2015 |
Neskey DM, Osman AA, Ow TJ, Katsonis P, McDonald T, Hicks SC, Hsu TK, Pickering CR, Ward A, Patel A, Yordy JS, Skinner HD, Giri U, Sano D, Story MD, ... ... Kimmel M, et al. Evolutionary Action Score of TP53 Identifies High-Risk Mutations Associated with Decreased Survival and Increased Distant Metastases in Head and Neck Cancer. Cancer Research. 75: 1527-36. PMID 25634208 DOI: 10.1158/0008-5472.Can-14-2735 |
0.617 |
|
| 2015 |
Osman AA, Monroe MM, Ortega Alves MV, Patel AA, Katsonis P, Fitzgerald AL, Neskey DM, Frederick MJ, Woo SH, Caulin C, Hsu TK, McDonald TO, Kimmel M, Meyn RE, Lichtarge O, et al. Wee-1 kinase inhibition overcomes cisplatin resistance associated with high-risk TP53 mutations in head and neck cancer through mitotic arrest followed by senescence. Molecular Cancer Therapeutics. 14: 608-19. PMID 25504633 DOI: 10.1158/1535-7163.Mct-14-0735-T |
0.327 |
|
| 2015 |
McDonald TO, Kimmel M. A multitype infinite-allele branching process with applications to cancer evolution Journal of Applied Probability. 52: 864-876. DOI: 10.1239/Jap/1445543852 |
0.32 |
|
| 2015 |
Wojdyla T, Mehta H, Glaubach T, McDonald T, Corey SJ, Kimmel M. Abstract B2-50: Stochastic population genetics modeling of the evolution of the myelodysplastic syndrome Cancer Research. 75. DOI: 10.1158/1538-7445.Compsysbio-B2-50 |
0.382 |
|
| 2014 |
Kimmel M. Stochasticity and determinism in models of hematopoiesis. Advances in Experimental Medicine and Biology. 844: 119-52. PMID 25480640 DOI: 10.1007/978-1-4939-2095-2_7 |
0.36 |
|
| 2014 |
Bertolusso R, Tian B, Zhao Y, Vergara L, Sabree A, Iwanaszko M, Lipniacki T, Brasier AR, Kimmel M. Dynamic cross talk model of the epithelial innate immune response to double-stranded RNA stimulation: coordinated dynamics emerging from cell-level noise. Plos One. 9: e93396. PMID 24710104 DOI: 10.1371/Journal.Pone.0093396 |
0.784 |
|
| 2014 |
Chen X, Foy M, Kimmel M, Gorlova OY. Modeling the natural history and detection of lung cancer based on smoking behavior. Plos One. 9: e93430. PMID 24705368 DOI: 10.1371/Journal.Pone.0093430 |
0.646 |
|
| 2014 |
Cyran KA, Kimmel M. Development of multi-null-hypotheses method for detection of selective forces at molecular level in evolution of human genes involved in DNA-repair mechanism impaired in cancer progression Ifac Proceedings Volumes (Ifac-Papersonline). 19: 11547-11552. DOI: 10.3182/20140824-6-Za-1003.02575 |
0.321 |
|
| 2014 |
Wojdyła T, Glaubach T, Corey S, Kimmel M. Application of the Stochastic Moran Model of Population Genetics to Understanding the Timing of a Driver Mutation in Myelodysplastic Syndrome (MDS) Ifac Proceedings Volumes. 47: 11542-11546. DOI: 10.3182/20140824-6-Za-1003.02095 |
0.323 |
|
| 2014 |
Saliba J, Zabriskie R, Powell B, Hicks S, Kimmel M, Cheung H, Ritter D, Muzny DM, Reid JG, Wheeler DA, Gibbs RA, Plon SE. Abstract A8: Functional analysis of genomic variants identified through whole exome sequencing of pediatric lymphocytic leukemia kindreds Cancer Research. 74. DOI: 10.1158/1538-7445.Pedcan-A8 |
0.624 |
|
| 2013 |
Kimmel M, Corey S. Stochastic Hypothesis of Transition from Inborn Neutropenia to AML: Interactions of Cell Population Dynamics and Population Genetics. Frontiers in Oncology. 3: 89. PMID 23641360 DOI: 10.3389/Fonc.2013.00089 |
0.352 |
|
| 2013 |
Hicks S, Plon SE, Kimmel M. Statistical analysis of missense mutation classifiers. Human Mutation. 34: 405-6. PMID 23086893 DOI: 10.1002/Humu.22243 |
0.584 |
|
| 2013 |
Goldwasser DL, Kimmel M. Small median tumor diameter at cure threshold (<20 mm) among aggressive non-small cell lung cancers in male smokers predicts both chest X-ray and CT screening outcomes in a novel simulation framework. International Journal of Cancer. Journal International Du Cancer. 132: 189-97. PMID 22510979 DOI: 10.1002/Ijc.27599 |
0.773 |
|
| 2013 |
Wu X, Kimmel M. Modeling neutral evolution using an infinite-allele Markov branching process International Journal of Stochastic Analysis. 2013. DOI: 10.1155/2013/963831 |
0.497 |
|
| 2012 |
McMahon PM, Hazelton WD, Kimmel M, Clarke LD. Chapter 13: CISNET lung models: comparison of model assumptions and model structures. Risk Analysis : An Official Publication of the Society For Risk Analysis. 32: S166-78. PMID 22882887 DOI: 10.1111/J.1539-6924.2011.01714.X |
0.366 |
|
| 2012 |
Foy M, Deng L, Spitz M, Gorlova O, Kimmel M. Chapter 11: Rice-MD Anderson lung cancer model. Risk Analysis : An Official Publication of the Society For Risk Analysis. 32: S142-50. PMID 22882885 DOI: 10.1111/J.1539-6924.2011.01741.X |
0.589 |
|
| 2012 |
Moolgavkar SH, Holford TR, Levy DT, Kong CY, Foy M, Clarke L, Jeon J, Hazelton WD, Meza R, Schultz F, McCarthy W, Boer R, Gorlova O, Gazelle GS, Kimmel M, et al. Impact of reduced tobacco smoking on lung cancer mortality in the United States during 1975-2000. Journal of the National Cancer Institute. 104: 541-8. PMID 22423009 DOI: 10.1093/Jnci/Djs136 |
0.612 |
|
| 2012 |
Bertolusso R, Kimmel M. Spatial and stochastic effects in a model of viral infection Fundamenta Informaticae. 118: 327-343. DOI: 10.3233/Fi-2012-718 |
0.768 |
|
| 2012 |
Hicks S, Plon SE, Kimmel M. Bernoulli mixture models in application to the evaluation of algorithms estimating functionality of missense mutations Bmc Proceedings. 6. DOI: 10.1186/1753-6561-6-S6-P15 |
0.602 |
|
| 2012 |
Saliba J, Trevino LR, Meng Q, Zabriskie R, Powell B, Hicks S, Kimmel M, Cheung H, Muzny DM, Reid JG, Wheeler D, Gibbs RA, Plon SE. Abstract 5113: Functional analysis of genomic variants identified through whole exome sequencing for susceptibility to lymphocytic leukemia Cancer Research. 72: 5113-5113. DOI: 10.1158/1538-7445.Am2012-5113 |
0.637 |
|
| 2012 |
Goldwasser DL, Kimmel M. Abstract A14: Small Tumor Diameter at Cure Threshold (< 20mm) Among Aggressive Lung Cancers Predicts both Chest X-ray and CT Screening Outcomes in a Novel Simulation Framework Clinical Cancer Research. 18: A14-A14. DOI: 10.1158/1078-0432.12Aacriaslc-A14 |
0.771 |
|
| 2012 |
Bertolusso R, Kimmel M. Modeling spatial effects in early carcinogenesis: Stochastic versus deterministic reaction-diffusion systems Mathematical Modelling of Natural Phenomena. 7: 245-260. DOI: 10.1051/Mmnp/20127111 |
0.773 |
|
| 2011 |
Foy M, Yip R, Chen X, Kimmel M, Gorlova OY, Henschke CI. Modeling the mortality reduction due to computed tomography screening for lung cancer. Cancer. 117: 2703-8. PMID 21656748 DOI: 10.1002/Cncr.25847 |
0.624 |
|
| 2011 |
Chen X, Gorlov IP, Merriman KW, Weng SF, Foy M, Keener G, Amos CI, Spitz MR, Kimmel M, Gorlova OY. Association of smoking with tumor size at diagnosis in non-small cell lung cancer. Lung Cancer (Amsterdam, Netherlands). 74: 378-83. PMID 21645942 DOI: 10.1016/J.Lungcan.2011.04.020 |
0.608 |
|
| 2011 |
Foy M, Chen X, Kimmel M, Gorlova OY. Adjusting a cancer mortality-prediction model for disease status-related eligibility criteria. Bmc Medical Research Methodology. 11: 64. PMID 21569346 DOI: 10.1186/1471-2288-11-64 |
0.646 |
|
| 2011 |
Hicks S, Wheeler DA, Plon SE, Kimmel M. Prediction of missense mutation functionality depends on both the algorithm and sequence alignment employed. Human Mutation. 32: 661-8. PMID 21480434 DOI: 10.1002/Humu.21490 |
0.589 |
|
| 2011 |
Foy M, Spitz MR, Kimmel M, Gorlova OY. A smoking-based carcinogenesis model for lung cancer risk prediction. International Journal of Cancer. Journal International Du Cancer. 129: 1907-13. PMID 21140453 DOI: 10.1002/Ijc.25834 |
0.64 |
|
| 2011 |
Foy M, Yip R, Chen X, Kimmel M, Gorlova OY, Henschke CI. Erratum: Modeling the mortality reduction due to computed tomography screening for lung cancer (Cancer (2011) 117 (2703-2708)) Cancer. 117. DOI: 10.1002/Cncr.26158 |
0.619 |
|
| 2010 |
Cyran KA, Kimmel M. Alternatives to the Wright-Fisher model: the robustness of mitochondrial Eve dating. Theoretical Population Biology. 78: 165-72. PMID 20600209 DOI: 10.1016/J.Tpb.2010.06.001 |
0.304 |
|
| 2010 |
Kimmel M, Mathaes M. Modeling neutral evolution of Alu elements using a branching process. Bmc Genomics. 11: S11. PMID 20158868 DOI: 10.1186/1471-2164-11-S1-S11 |
0.726 |
|
| 2010 |
Whichard ZL, Sarkar CA, Kimmel M, Corey SJ. Hematopoiesis and its disorders: a systems biology approach. Blood. 115: 2339-47. PMID 20103779 DOI: 10.1182/Blood-2009-08-215798 |
0.316 |
|
| 2010 |
Goldwasser DL, Kimmel M. Modeling excess lung cancer risk among screened arm participants in the Mayo Lung Project. Cancer. 116: 122-31. PMID 19918924 DOI: 10.1002/Cncr.24722 |
0.758 |
|
| 2010 |
Bobrowski A, Wojdyła T, Kimmel M. Asymptotic behavior of a Moran model with mutations, drift and recombination among multiple loci. Journal of Mathematical Biology. 61: 455-73. PMID 19904539 DOI: 10.1007/S00285-009-0308-1 |
0.339 |
|
| 2010 |
Chen X, Merriman KW, Gorlov IP, Weng S, Foy M, Keener G, Spitz MR, Kimmel M, Gorlova OY. Abstract 857: A preliminary study of the correlation of tumor size and epidemiological characteristics in patients with non-small cell lung cancer Cancer Research. 70: 857-857. DOI: 10.1158/1538-7445.Am10-857 |
0.312 |
|
| 2010 |
Wu X, Kimmel M. A note on the path to extinction of critical Markov branching processes Statistics and Probability Letters. 80: 263-269. DOI: 10.1016/J.Spl.2009.10.016 |
0.463 |
|
| 2010 |
Bobrowski A, Kimmel M, Kubalińska M. Non-homogeneous infinitely many sites discrete-time model with exact coalescent Mathematical Methods in the Applied Sciences. 33: 713-732. DOI: 10.1002/Mma.1189 |
0.354 |
|
| 2009 |
Deng L, Kimmel M, Foy M, Spitz M, Wei Q, Gorlova O. Estimation of the effects of smoking and DNA repair capacity on coefficients of a carcinogenesis model for lung cancer. International Journal of Cancer. Journal International Du Cancer. 124: 2152-8. PMID 19123470 DOI: 10.1002/Ijc.24149 |
0.624 |
|
| 2009 |
Wu X, Strome ED, Meng Q, Hastings PJ, Plon SE, Kimmel M. A robust estimator of mutation rates. Mutation Research. 661: 101-9. PMID 19100753 DOI: 10.1016/J.Mrfmmm.2008.11.015 |
0.489 |
|
| 2008 |
Strome ED, Wu X, Kimmel M, Plon SE. Heterozygous screen in Saccharomyces cerevisiae identifies dosage-sensitive genes that affect chromosome stability. Genetics. 178: 1193-207. PMID 18245329 DOI: 10.1534/Genetics.107.084103 |
0.514 |
|
| 2008 |
Kristensen DM, Ward RM, Lisewski AM, Erdin S, Chen BY, Fofanov VY, Kimmel M, Kavraki LE, Lichtarge O. Prediction of enzyme function based on 3D templates of evolutionarily important amino acids. Bmc Bioinformatics. 9: 17. PMID 18190718 DOI: 10.1186/1471-2105-9-17 |
0.622 |
|
| 2008 |
Marciniak-Czochra A, Kimmel M. Reaction-Difusion Model of Early Carcinogenesis: The Effects of Influx of Mutated Cells Mathematical Modelling of Natural Phenomena. 3: 90-114. DOI: 10.1051/Mmnp:2008043 |
0.378 |
|
| 2007 |
Chen BY, Bryant DH, Cruess AE, Bylund JH, Fofanov VY, Kristensen DM, Kimmel M, Lichtarge O, Kavraki LE. Composite motifs integrating multiple protein structures increase sensitivity for function prediction. Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 6: 343-55. PMID 17951837 |
0.59 |
|
| 2007 |
Lipniacki T, Kimmel M. Deterministic and stochastic models of NFkappaB pathway. Cardiovascular Toxicology. 7: 215-34. PMID 17943462 DOI: 10.1007/S12012-007-9003-X |
0.344 |
|
| 2007 |
Lipniacki T, Puszynski K, Paszek P, Brasier AR, Kimmel M. Single TNFalpha trimers mediating NF-kappaB activation: stochastic robustness of NF-kappaB signaling. Bmc Bioinformatics. 8: 376. PMID 17925009 DOI: 10.1186/1471-2105-8-376 |
0.668 |
|
| 2007 |
Chen BY, Fofanov VY, Bryant DH, Dodson BD, Kristensen DM, Lisewski AM, Kimmel M, Lichtarge O, Kavraki LE. The MASH pipeline for protein function prediction and an algorithm for the geometric refinement of 3D motifs. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 791-816. PMID 17691895 DOI: 10.1089/Cmb.2007.R017 |
0.625 |
|
| 2007 |
Fujarewicz K, Kimmel M, Lipniacki T, Swierniak A. Adjoint systems for models of cell signaling pathways and their application to parameter fitting. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 4: 322-35. PMID 17666754 DOI: 10.1109/Tcbb.2007.1016 |
0.332 |
|
| 2007 |
Chen BY, Bryant DH, Fofanov VY, Kristensen DM, Cruess AE, Kimmel M, Lichtarge O, Kavraki LE. Cavity scaling: automated refinement of cavity-aware motifs in protein function prediction. Journal of Bioinformatics and Computational Biology. 5: 353-82. PMID 17589966 DOI: 10.1142/S021972000700276X |
0.619 |
|
| 2007 |
Peng B, Amos CI, Kimmel M. Forward-time simulations of human populations with complex diseases. Plos Genetics. 3: e47. PMID 17381243 DOI: 10.1371/Journal.Pgen.0030047 |
0.419 |
|
| 2007 |
Peng B, Kimmel M. Simulations provide support for the common disease-common variant hypothesis. Genetics. 175: 763-76. PMID 17151262 DOI: 10.1534/Genetics.106.058164 |
0.422 |
|
| 2007 |
Marciniak-Czochra A, Kimmel M. Reaction-diffusion approach to modeling of the spread of early tumors along linear or tubular structures. Journal of Theoretical Biology. 244: 375-87. PMID 17046022 DOI: 10.1016/J.Jtbi.2006.08.021 |
0.35 |
|
| 2007 |
Marciniak-Czochra A, Kimmel M. Modelling Of Early Lung Cancer Progression: Influence Of Growth Factor Production And Cooperation Between Partially Transformed Cells Mathematical Models and Methods in Applied Sciences. 17: 1693-1719. DOI: 10.1142/S0218202507002443 |
0.367 |
|
| 2007 |
Hat B, Paszek P, Kimmel M, Piechor K, Lipniacki T. How the number of alleles influences gene expression Journal of Statistical Physics. 128: 511-533. DOI: 10.1007/S10955-006-9218-4 |
0.667 |
|
| 2006 |
Chen BY, Bryant DH, Fofanov VY, Kristensen DM, Cruess AE, Kimmel M, Lichtarge O, Kavraki LE. Cavity-aware motifs reduce false positives in protein function prediction. Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 311-23. PMID 17369649 |
0.585 |
|
| 2006 |
Swartz MD, Kimmel M, Mueller P, Amos CI. Stochastic search gene suggestion: a Bayesian hierarchical model for gene mapping. Biometrics. 62: 495-503. PMID 16918914 DOI: 10.1111/J.1541-0420.2005.00451.X |
0.564 |
|
| 2006 |
Kristensen DM, Chen BY, Fofanov VY, Ward RM, Lisewski AM, Kimmel M, Kavraki LE, Lichtarge O. Recurrent use of evolutionary importance for functional annotation of proteins based on local structural similarity. Protein Science : a Publication of the Protein Society. 15: 1530-6. PMID 16672239 DOI: 10.1110/Ps.062152706 |
0.623 |
|
| 2006 |
Lipniacki T, Paszek P, Brasier AR, Luxon BA, Kimmel M. Stochastic regulation in early immune response. Biophysical Journal. 90: 725-42. PMID 16284261 DOI: 10.1529/Biophysj.104.056754 |
0.676 |
|
| 2006 |
Lipniacki T, Paszek P, Marciniak-Czochra A, Brasier AR, Kimmel M. Transcriptional stochasticity in gene expression. Journal of Theoretical Biology. 238: 348-67. PMID 16039671 DOI: 10.1016/J.Jtbi.2005.05.032 |
0.659 |
|
| 2006 |
Smieja J, Jamaluddin M, Brasier A, Kimmel M. DETERMINISTIC MODELING OF INTERFERON-BETA SIGNALING PATHWAY Ifac Proceedings Volumes. 39: 423-428. DOI: 10.3182/20060920-3-Fr-2912.00076 |
0.315 |
|
| 2006 |
Marciniak-Czochra A, Kimmel M. Dynamics of growth and signaling along linear and surface structures in very early tumors Computational and Mathematical Methods in Medicine. 7: 189-213. DOI: 10.1080/10273660600969091 |
0.304 |
|
| 2006 |
Chen BY, Fofanov VY, Bryant DH, Dodson BD, Kristensen DM, Lisewski AM, Kimmel M, Lichtarge O, Kavraki LE. Geometric sieving: Automated distributed optimization of 3D motifs for protein function prediction Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3909: 500-515. |
0.591 |
|
| 2005 |
Fujarewicz K, Kimmel M, Swierniak A. On fitting of mathematical models of cell signaling pathways using adjoint systems. Mathematical Biosciences and Engineering : Mbe. 2: 527-34. PMID 20369938 DOI: 10.3934/Mbe.2005.2.527 |
0.326 |
|
| 2005 |
Peng B, Kimmel M. simuPOP: a forward-time population genetics simulation environment. Bioinformatics (Oxford, England). 21: 3686-7. PMID 16020469 DOI: 10.1093/Bioinformatics/Bti584 |
0.393 |
|
| 2005 |
Chen BY, Fofanov VY, Kristensen DM, Kimmel M, Lichtarge O, Kavraki LE. Algorithms for structural comparison and statistical analysis of 3D protein motifs. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 334-45. PMID 15759639 |
0.589 |
|
| 2005 |
Paszek P, Lipniacki T, Brasier AR, Tian B, Nowak DE, Kimmel M. Stochastic effects of multiple regulators on expression profiles in eukaryotes. Journal of Theoretical Biology. 233: 423-33. PMID 15652150 DOI: 10.1016/J.Jtbi.2004.10.023 |
0.673 |
|
| 2005 |
Gorlova O, Peng B, Yankelevitz D, Henschke C, Kimmel M. Estimating the growth rates of primary lung tumours from samples with missing measurements. Statistics in Medicine. 24: 1117-34. PMID 15568189 DOI: 10.1002/Sim.1987 |
0.392 |
|
| 2005 |
Marciniak-Czochra A, Kimmel M. Mathematical model of tumor invasion along linear or tubular structures Mathematical and Computer Modelling. 41: 1097-1108. DOI: 10.1016/J.Mcm.2005.05.005 |
0.308 |
|
| 2004 |
Bobrowski A, Kimmel M. Asymptotic behavior of joint distributions of characteristics of a pair of randomly chosen individuals in discrete-time Fisher-Wright models with mutations and drift. Theoretical Population Biology. 66: 355-67. PMID 15560913 DOI: 10.1016/J.Tpb.2004.07.003 |
0.324 |
|
| 2004 |
Lipniacki T, Paszek P, Brasier AR, Luxon B, Kimmel M. Mathematical model of NF-kappaB regulatory module. Journal of Theoretical Biology. 228: 195-215. PMID 15094015 DOI: 10.1016/J.Jtbi.2004.01.001 |
0.658 |
|
| 2003 |
Gorlova OY, Amos C, Henschke C, Lei L, Spitz M, Wei Q, Wu X, Kimmel M. Genetic susceptibility for lung cancer: interactions with gender and smoking history and impact on early detection policies. Human Heredity. 56: 139-45. PMID 14614248 DOI: 10.1159/000073742 |
0.514 |
|
| 2003 |
Simek K, Kimmel M. A note on estimation of dynamics of multiple gene expression based on singular value decomposition. Mathematical Biosciences. 182: 183-99. PMID 12591624 DOI: 10.1016/S0025-5564(02)00185-2 |
0.308 |
|
| 2003 |
Yao H, Kristensen DM, Mihalek I, Sowa ME, Shaw C, Kimmel M, Kavraki L, Lichtarge O. An accurate, sensitive, and scalable method to identify functional sites in protein structures. Journal of Molecular Biology. 326: 255-61. PMID 12547207 DOI: 10.1016/S0022-2836(02)01336-0 |
0.522 |
|
| 2003 |
Swierniak A, Polanski A, Smieja J, Kimmel M. Modelling growth of drug resistant cancer populations as the system with positive feedback Mathematical and Computer Modelling. 37: 1245-1252. DOI: 10.1016/S0895-7177(03)00134-1 |
0.317 |
|
| 2003 |
Bobrowski A, Kimmel M. A random evolution related to a Fisher-Wright-Moran model with mutation, recombination and drift Mathematical Methods in the Applied Sciences. 26: 1587-1599. DOI: 10.1002/Mma.435 |
0.337 |
|
| 2002 |
Bonnen PE, Wang PJ, Kimmel M, Chakraborty R, Nelson DL. Haplotype and linkage disequilibrium architecture for human cancer-associated genes. Genome Research. 12: 1846-53. PMID 12466288 DOI: 10.1101/Gr.483802 |
0.3 |
|
| 2002 |
Bobrowski A, Wang N, Chakraborty R, Kimmel M. Non-homogeneous infinite sites model under demographic change: mathematical description and asymptotic behavior of pairwise distributions. Mathematical Biosciences. 175: 83-115. PMID 11825592 DOI: 10.1016/S0025-5564(01)00090-6 |
0.335 |
|
| 2002 |
Kimmel M. Why mathematics is needed to understand complex genetics diseases Journal of Biological Systems. 10: 359-380. DOI: 10.1142/S0218339002000688 |
0.314 |
|
| 2001 |
Gorlova OY, Kimmel M, Henschke C. Modeling of long-term screening for lung carcinoma. Cancer. 92: 1531-1540. PMID 11745232 DOI: 10.1002/1097-0142(20010915)92:6<1531::Aid-Cncr1479>3.0.Co;2-P |
0.33 |
|
| 2001 |
Olofsson P, Schwalb O, Chakraborty R, Kimmel M. An application of a general branching process in the study of the genetics of aging. Journal of Theoretical Biology. 213: 547-557. PMID 11742524 DOI: 10.1006/Jtbi.2001.2435 |
0.303 |
|
| 2001 |
Renwick A, Davison L, Spratt H, King JP, Kimmel M. DNA dinucleotide evolution in humans: fitting theory to facts. Genetics. 159: 737-47. PMID 11606548 |
0.35 |
|
| 2001 |
Bobrowski A, Kimmel M, Arino O, Chakraborty R. A semigroup representation and asymptotic behavior of certain statistics of the fisher-wright-moran coalescent Handbook of Statistics. 19: 215-247. DOI: 10.1016/S0169-7161(01)19010-3 |
0.3 |
|
| 2000 |
King JP, Kimmel M, Chakraborty R. A power analysis of microsatellite-based statistics for inferring past population growth. Molecular Biology and Evolution. 17: 1859-68. PMID 11110902 DOI: 10.1093/Oxfordjournals.Molbev.A026287 |
0.411 |
|
| 1999 |
Bobrowski A, Kimmel M. Asymptotic behaviour of an operator exponential related to branching random walk models of dna repeats Journal of Biological Systems. 7: 33-43. DOI: 10.1142/S0218339099000048 |
0.309 |
|
| 1999 |
Kimmel M. Population dynamics coded in DNA: Genetic traces of the expansion of modern humans Physica a: Statistical Mechanics and Its Applications. 273: 158-168. DOI: 10.1016/S0378-4371(99)00351-9 |
0.331 |
|
| 1998 |
Polanski A, Kimmel M, Chakraborty R. Application of a time-dependent coalescence process for inferring the history of population size changes from DNA sequence data Proceedings of the National Academy of Sciences of the United States of America. 95: 5456-5461. PMID 9576903 DOI: 10.1073/Pnas.95.10.5456 |
0.304 |
|
| 1998 |
Kimmel M, Chakraborty R, King JP, Bamshad M, Watkins WS, Jorde LB. Signatures of population expansion in microsatellite repeat data. Genetics. 148: 1921-30. PMID 9560405 |
0.321 |
|
| 1998 |
Polański A, Chakraborty R, Kimmel M, Deka R. Dynamic balance of segregation distortion and selection maintains normal allele sizes at the myotonic dystrophy locus. Mathematical Biosciences. 147: 93-112. PMID 9401353 DOI: 10.1016/S0025-5564(97)00082-5 |
0.304 |
|
| 1997 |
Bat O, Kimmel M, Axelrod DE. Computer simulation of expansions of DNA triplet repeats in the fragile X syndrome and Huntington's disease Journal of Theoretical Biology. 188: 53-67. PMID 9299309 DOI: 10.1006/Jtbi.1997.0451 |
0.313 |
|
| 1997 |
Staudte RG, Huggins RM, Zhang J, Axelrod DE, Kimmel M. Estimating clonal heterogeneity and interexperiment variability with the bifurcating autoregressive model for cell lineage data. Mathematical Biosciences. 143: 103-21. PMID 9212596 DOI: 10.1016/S0025-5564(97)00006-0 |
0.339 |
|
| 1996 |
Kimmel M, Chakraborty R. Measures of variation at DNA repeat loci under a general stepwise mutation model Theoretical Population Biology. 50: 345-367. PMID 9000494 DOI: 10.1006/Tpbi.1996.0035 |
0.325 |
|
| 1996 |
Stivers DN, Kimmel M, Axelrod DE. A discrete-time, multi-type generational inheritance branching process model of cell proliferation. Mathematical Biosciences. 137: 25-50. PMID 8854661 DOI: 10.1016/S0025-5564(96)00066-1 |
0.346 |
|
| 1996 |
Swierniak A, Polanski A, Kimmel M. Optimal control problems arising in cell-cycle-specific cancer chemotherapy Cell Proliferation. 29: 117-139. PMID 8652742 DOI: 10.1046/J.1365-2184.1996.00995.X |
0.332 |
|
| 1996 |
Świerniak A, Polański A, Kimmel M. Control Problems Arising in Chemotherapy Under Evolving Drug Resistance Ifac Proceedings Volumes. 29: 914-919. DOI: 10.1016/S1474-6670(17)57780-0 |
0.3 |
|
| 1995 |
Arino O, Kimmel M, Webb GF. Mathematical modeling of the loss of telomere sequences Journal of Theoretical Biology. 177: 45-57. PMID 8551749 DOI: 10.1006/Jtbi.1995.0223 |
0.34 |
|
| 1994 |
Kimmel M, Stivers DN. Time-continuous branching walk models of unstable gene amplification Bulletin of Mathematical Biology. 56: 337-357. PMID 8186758 DOI: 10.1016/S0092-8240(05)80262-9 |
0.385 |
|
| 1994 |
Axelrod DE, Baggerly KA, Kimmel M. Gene Amplification by Unequal Sister Chromatid Exchange: Probabilistic Modeling and Analysis of Drug Resistance Data Journal of Theoretical Biology. 168: 151-159. PMID 8022195 DOI: 10.1006/Jtbi.1994.1095 |
0.372 |
|
| 1994 |
Kimmel M, Arino O. Two simple models of almost the same population with very different dynamics Mathematical Biosciences. 122: 183-200. PMID 7919666 DOI: 10.1016/0025-5564(94)90057-4 |
0.312 |
|
| 1994 |
Kimmel M, Axelrod DE. Fluctuation test for two-stage mutations: application to gene amplification Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis. 306: 45-60. PMID 7512202 DOI: 10.1016/0027-5107(94)90166-X |
0.333 |
|
| 1993 |
Flehinger BJ, Kimmel M, Polyak T, Melamed MR. Screening for lung cancer. The Mayo Lung Project revisited. Cancer. 72: 1573-1580. PMID 8394199 DOI: 10.1002/1097-0142(19930901)72:5<1573::Aid-Cncr2820720514>3.0.Co;2-9 |
0.34 |
|
| 1993 |
Arino O, Kimmel M. Comparison of Approaches to Modeling of Cell Population Dynamics Siam Journal On Applied Mathematics. 53: 1480-1504. DOI: 10.1137/0153069 |
0.302 |
|
| 1992 |
Kimmel M, Axelrod DE, Wahl GM. A branching process model of gene amplification following chromosome breakage. Mutation Research. 276: 225-39. PMID 1374516 DOI: 10.1016/0165-1110(92)90010-7 |
0.336 |
|
| 1992 |
Flehinger BJ, Kimmel M, Melamed MR. The effect of surgical treatment on survival from early lung cancer; Implications for screening Chest. 101: 1013-1018. PMID 1313349 DOI: 10.1378/Chest.101.4.1013 |
0.304 |
|
| 1991 |
Arino O, Kimmel M. Asymptotic behavior of nonlinear semigroup describing a model of selective cell growth regulation Journal of Mathematical Biology. 29: 289-314. PMID 2061696 DOI: 10.1007/Bf00167154 |
0.312 |
|
| 1991 |
Kimmel M, Arino O. Cell cycle kinetics with supramitotic control, two cell types, and unequal division: a model of transformed embryonic cells Mathematical Biosciences. 105: 47-79. PMID 1806095 DOI: 10.1016/0025-5564(91)90048-N |
0.342 |
|
| 1991 |
Kimmel M, Axelrod DE. Unequal cell division, growth regulation and colony size of mammalian cells: A mathematical model and analysis of experimental data Journal of Theoretical Biology. 153: 157-180. PMID 1787734 DOI: 10.1016/S0022-5193(05)80420-5 |
0.338 |
|
| 1991 |
Kimmel M, Flehinger BJ. Nonparametric estimation of the size-metastasis relationship in solid cancers Biometrics. 47: 987-1004. PMID 1742451 DOI: 10.2307/2532654 |
0.317 |
|
| 1989 |
Arino O, Kimmel M. Asymptotic behavior of a nonlinear functional-integral equation of cell kinetics with unequal division Journal of Mathematical Biology. 27: 341-354. PMID 2746142 DOI: 10.1007/Bf00275817 |
0.3 |
|
| 1988 |
Flehinger BJ, Kimmel M, Melamed MR. Natural history of adenocarcinoma-large cell carcinoma of the lung: Conclusions from screening programs in New York and Baltimore Journal of the National Cancer Institute. 80: 337-344. PMID 2833601 DOI: 10.1093/Jnci/80.5.337 |
0.333 |
|
| 1987 |
Flehinger BJ, Kimmel M. The natural history of lung cancer in a periodically screened population Biometrics. 43: 127-144. PMID 3567302 DOI: 10.2307/2531955 |
0.346 |
|
| 1987 |
Arino O, Kimmel M. Asymptotic analysis of a cell cycle model based on unequal division Siam Journal On Applied Mathematics. 47: 128-145. DOI: 10.1137/0147008 |
0.317 |
|
| 1986 |
Kimmel M, Darzynkiewicz Z, Staiano-Coico L. Stathmokinetic analysis of human epidermal cells in vitro Cell and Tissue Kinetics. 19: 289-304. PMID 2424602 DOI: 10.1111/J.1365-2184.1986.Tb00681.X |
0.312 |
|
| 1986 |
Arino O, Kimmel M. Stability analysis of models of cell production systems Mathematical Modelling. 7: 1269-1300. DOI: 10.1016/0270-0255(86)90081-3 |
0.325 |
|
| 1986 |
Kimmel M. Does competition for food imply skewness? Mathematical Biosciences. 80: 239-264. DOI: 10.1016/0025-5564(86)90047-7 |
0.3 |
|
| 1986 |
Kimmel M, Traganos F. Estimation and prediction of cell cycle specific effects of anticancer drugs Mathematical Biosciences. 80: 187-208. DOI: 10.1016/0025-5564(86)90044-1 |
0.301 |
|
| 1985 |
Kimmel M, Darzynkiewicz Z, Arino O, Traganos F. Analysis of a cell cycle model based on unequal division of metabolic constituents to daughter cells during cytokinesis. Journal of Theoretical Biology. 110: 637-64. PMID 6084152 DOI: 10.1016/S0022-5193(84)80149-6 |
0.319 |
|
| 1985 |
Arino O, Kimmel M. Asymptotic Analysis of a Functional-Integral Equation Related to Cell Population Kinetics North-Holland Mathematics Studies. 110: 27-32. DOI: 10.1016/S0304-0208(08)72684-7 |
0.3 |
|
| 1983 |
Kimmel M, Traganos F, Darzynkiewicz Z. Do all daughter cells enter the 'indeterminate' ('A') state of the cell cycle? Analysis of stathmokinetic experiments on L1210 cells Cytometry. 4: 191-201. PMID 6661986 DOI: 10.1002/Cyto.990040302 |
0.314 |
|
| 1983 |
Kimmel M, Kimmel B, Skierski J. Mathematical Model of Leukemic-Cell Circulation in the Mouse Mathematical Biosciences. 67: 81-99. DOI: 10.1016/0025-5564(83)90020-2 |
0.335 |
|
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