Mark Jenkinson - Publications

Affiliations: 
University of Oxford, Oxford, United Kingdom 

133 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Baxter L, Fitzgibbon S, Moultrie F, Goksan S, Jenkinson M, Smith S, Andersson J, Duff E, Slater R. Optimising neonatal fMRI data analysis: Design and validation of an extended dHCP preprocessing pipeline to characterise noxious-evoked brain activity in infants. Neuroimage. 186: 286-300. PMID 30414984 DOI: 10.1016/j.neuroimage.2018.11.006  0.76
2018 Schmid AB, Campbell J, Hurley SA, Jbabdi S, Andersson JL, Jenkinson M, Bangerter NK, Bennett DL, Tracey I, Frost R, Clare S. Feasibility of Diffusion Tensor and Morphologic Imaging of Peripheral Nerves at Ultra-High Field Strength. Investigative Radiology. PMID 29979328 DOI: 10.1097/RLI.0000000000000492  0.44
2018 Bozek J, Makropoulos A, Schuh A, Fitzgibbon S, Wright R, Glasser MF, Coalson TS, O'Muircheartaigh J, Hutter J, Price AN, Cordero-Grande L, Teixeira RPAG, Hughes E, Tusor N, Baruteau KP, ... ... Jenkinson M, et al. Construction of a neonatal cortical surface atlas using Multimodal Surface Matching in the Developing Human Connectome Project. Neuroimage. PMID 29890325 DOI: 10.1016/j.neuroimage.2018.06.018  0.76
2018 Pallebage-Gamarallage M, Foxley S, Menke RAL, Huszar IN, Jenkinson M, Tendler BC, Wang C, Jbabdi S, Turner MR, Miller KL, Ansorge O. Dissecting the pathobiology of altered MRI signal in amyotrophic lateral sclerosis: A post mortem whole brain sampling strategy for the integration of ultra-high-field MRI and quantitative neuropathology. Bmc Neuroscience. 19: 11. PMID 29529995 DOI: 10.1186/s12868-018-0416-1  0.4
2018 Makropoulos A, Robinson EC, Schuh A, Wright R, Fitzgibbon S, Bozek J, Counsell SJ, Steinweg J, Vecchiato K, Passerat-Palmbach J, Lenz G, Mortari F, Tenev T, Duff EP, Bastiani M, ... ... Jenkinson M, et al. The developing human connectome project: A minimal processing pipeline for neonatal cortical surface reconstruction. Neuroimage. PMID 29409960 DOI: 10.1016/j.neuroimage.2018.01.054  0.76
2017 Battaglini M, Jenkinson M, De Stefano N. SIENA-XL for improving the assessment of gray and white matter volume changes on brain MRI. Human Brain Mapping. PMID 29222814 DOI: 10.1002/hbm.23828  0.64
2017 Robinson EC, Garcia K, Glasser MF, Chen Z, Coalson TS, Makropoulos A, Bozek J, Wright R, Schuh A, Webster M, Hutter J, Price A, Grande LC, Hughes E, Tusor N, ... ... Jenkinson M, et al. Multimodal surface matching with higher-order smoothness constraints. Neuroimage. PMID 29100940 DOI: 10.1016/j.neuroimage.2017.10.037  0.76
2017 Alfaro-Almagro F, Jenkinson M, Bangerter NK, Andersson JLR, Griffanti L, Douaud G, Sotiropoulos SN, Jbabdi S, Hernandez-Fernandez M, Vallee E, Vidaurre D, Webster M, McCarthy P, Rorden C, Daducci A, et al. Image processing and Quality Control for the first 10,000 brain imaging datasets from UK Biobank. Neuroimage. PMID 29079522 DOI: 10.1016/j.neuroimage.2017.10.034  0.76
2017 Mollink J, Kleinnijenhuis M, Cappellen van Walsum AV, Sotiropoulos SN, Cottaar M, Mirfin C, Heinrich MP, Jenkinson M, Pallebage-Gamarallage M, Ansorge O, Jbabdi S, Miller KL. Evaluating fibre orientation dispersion in white matter: Comparison of diffusion MRI, histology and polarized light imaging. Neuroimage. PMID 28602815 DOI: 10.1016/j.neuroimage.2017.06.001  0.72
2017 Harston GW, Minks D, Sheerin F, Payne SJ, Chappell M, Jezzard P, Jenkinson M, Kennedy J. Optimizing image registration and infarct definition in stroke research. Annals of Clinical and Translational Neurology. 4: 166-174. PMID 28275650 DOI: 10.1002/acn3.388  0.4
2016 Rocca MA, Battaglini M, Benedict RH, De Stefano N, Geurts JJ, Henry RG, Horsfield MA, Jenkinson M, Pagani E, Filippi M. Brain MRI atrophy quantification in MS: From methods to clinical application. Neurology. PMID 27986875 DOI: 10.1212/WNL.0000000000003542  0.64
2016 Goksan S, Hartley C, Hurley SA, Winkler AM, Duff EP, Jenkinson M, Rogers R, Clare S, Slater R. Optimal echo time for functional MRI of the infant brain identified in response to noxious stimulation. Magnetic Resonance in Medicine. PMID 27654315 DOI: 10.1002/mrm.26455  0.44
2016 Miller KL, Alfaro-Almagro F, Bangerter NK, Thomas DL, Yacoub E, Xu J, Bartsch AJ, Jbabdi S, Sotiropoulos SN, Andersson JL, Griffanti L, Douaud G, Okell TW, Weale P, Dragonu I, ... ... Jenkinson M, et al. Multimodal population brain imaging in the UK Biobank prospective epidemiological study. Nature Neuroscience. PMID 27643430 DOI: 10.1038/nn.4393  1
2016 Glasser MF, Smith SM, Marcus DS, Andersson JL, Auerbach EJ, Behrens TE, Coalson TS, Harms MP, Jenkinson M, Moeller S, Robinson EC, Sotiropoulos SN, Xu J, Yacoub E, Ugurbil K, et al. The Human Connectome Project's neuroimaging approach. Nature Neuroscience. 19: 1175-1187. PMID 27571196 DOI: 10.1038/nn.4361  1
2016 Glasser MF, Coalson TS, Robinson EC, Hacker CD, Harwell J, Yacoub E, Ugurbil K, Andersson J, Beckmann CF, Jenkinson M, Smith SM, Van Essen DC. A multi-modal parcellation of human cerebral cortex. Nature. PMID 27437579 DOI: 10.1038/nature18933  1
2016 Griffanti L, Zamboni G, Khan A, Li L, Bonifacio G, Sundaresan V, Schulz UG, Kuker W, Battaglini M, Rothwell PM, Jenkinson M. BIANCA (brain intensity AbNormality classification algorithm): A new tool for automated segmentation of white matter hyperintensities. Neuroimage. PMID 27402600 DOI: 10.1016/j.neuroimage.2016.07.018  1
2015 Thomas AG, Dennis A, Rawlings NB, Stagg CJ, Matthews L, Morris M, Kolind SH, Foxley S, Jenkinson M, Nichols TE, Dawes H, Bandettini PA, Johansen-Berg H. Multi-modal characterization of rapid anterior hippocampal volume increase associated with aerobic exercise. Neuroimage. PMID 26654786 DOI: 10.1016/j.neuroimage.2015.10.090  1
2015 Visser E, Keuken MC, Douaud G, Gaura V, Bachoud-Levi AC, Remy P, Forstmann BU, Jenkinson M. Automatic segmentation of the striatum and globus pallidus using MIST: Multimodal Image Segmentation Tool. Neuroimage. 125: 479-497. PMID 26477650 DOI: 10.1016/j.neuroimage.2015.10.013  1
2015 Griffanti L, Rolinski M, Szewczyk-Krolikowski K, Menke RA, Filippini N, Zamboni G, Jenkinson M, Hu MT, Mackay CE. Challenges in the reproducibility of clinical studies with resting state fMRI: An example in early Parkinson's disease. Neuroimage. PMID 26386348 DOI: 10.1016/j.neuroimage.2015.09.021  1
2015 Matthews L, Kolind S, Brazier A, Leite MI, Brooks J, Traboulsee A, Jenkinson M, Johansen-Berg H, Palace J. Imaging Surrogates of Disease Activity in Neuromyelitis Optica Allow Distinction from Multiple Sclerosis. Plos One. 10: e0137715. PMID 26381510 DOI: 10.1371/journal.pone.0137715  1
2015 Goksan S, Hartley C, Emery F, Cockrill N, Poorun R, Moultrie F, Rogers R, Campbell J, Sanders M, Adams E, Clare S, Jenkinson M, Tracey I, Slater R. Correction: fMRI reveals neural activity overlap between adult and infant pain. Elife. 4. PMID 26020290 DOI: 10.7554/eLife.08663  0.44
2015 Goksan S, Hartley C, Emery F, Cockrill N, Poorun R, Moultrie F, Rogers R, Campbell J, Sanders M, Adams E, Clare S, Jenkinson M, Tracey I, Slater R. fMRI reveals neural activity overlap between adult and infant pain. Elife. 4. PMID 25895592 DOI: 10.7554/eLife.06356  1
2015 Faull OK, Jenkinson M, Clare S, Pattinson KT. Functional subdivision of the human periaqueductal grey in respiratory control using 7 tesla fMRI. Neuroimage. 113: 356-64. PMID 25703831 DOI: 10.1016/j.neuroimage.2015.02.026  1
2015 Harrison SJ, Woolrich MW, Robinson EC, Glasser MF, Beckmann CF, Jenkinson M, Smith SM. Large-scale probabilistic functional modes from resting state fMRI. Neuroimage. 109: 217-31. PMID 25598050 DOI: 10.1016/j.neuroimage.2015.01.013  1
2015 Poynton CB, Jenkinson M, Adalsteinsson E, Sullivan EV, Pfefferbaum A, Wells W. Quantitative susceptibility mapping by inversion of a perturbation field model: correlation with brain iron in normal aging. Ieee Transactions On Medical Imaging. 34: 339-53. PMID 25248179 DOI: 10.1109/TMI.2014.2358552  1
2014 Abdollahi RO, Kolster H, Glasser MF, Robinson EC, Coalson TS, Dierker D, Jenkinson M, Van Essen DC, Orban GA. Correspondences between retinotopic areas and myelin maps in human visual cortex. Neuroimage. 99: 509-24. PMID 24971513 DOI: 10.1016/j.neuroimage.2014.06.042  1
2014 Robinson EC, Jbabdi S, Glasser MF, Andersson J, Burgess GC, Harms MP, Smith SM, Van Essen DC, Jenkinson M. MSM: a new flexible framework for Multimodal Surface Matching. Neuroimage. 100: 414-26. PMID 24939340 DOI: 10.1016/j.neuroimage.2014.05.069  1
2014 Filippini N, Zsoldos E, Haapakoski R, Sexton CE, Mahmood A, Allan CL, Topiwala A, Valkanova V, Brunner EJ, Shipley MJ, Auerbach E, Moeller S, Uğurbil K, Xu J, Yacoub E, ... ... Jenkinson M, et al. Study protocol: The Whitehall II imaging sub-study. Bmc Psychiatry. 14: 159. PMID 24885374 DOI: 10.1186/1471-244X-14-159  1
2014 Mennes M, Jenkinson M, Valabregue R, Buitelaar JK, Beckmann C, Smith S. Optimizing full-brain coverage in human brain MRI through population distributions of brain size. Neuroimage. 98: 513-20. PMID 24747737 DOI: 10.1016/j.neuroimage.2014.04.030  1
2014 Sampaio-Baptista C, Scholz J, Jenkinson M, Thomas AG, Filippini N, Smit G, Douaud G, Johansen-Berg H. Gray matter volume is associated with rate of subsequent skill learning after a long term training intervention. Neuroimage. 96: 158-66. PMID 24680712 DOI: 10.1016/j.neuroimage.2014.03.056  1
2014 Millington RS, Yasuda CL, Jindahra P, Jenkinson M, Barbur JL, Kennard C, Cendes F, Plant GT, Bridge H. Quantifying the pattern of optic tract degeneration in human hemianopia. Journal of Neurology, Neurosurgery, and Psychiatry. 85: 379-86. PMID 24163431 DOI: 10.1136/jnnp-2013-306577  1
2014 Tijssen RH, Jenkinson M, Brooks JC, Jezzard P, Miller KL. Optimizing RetroICor and RetroKCor corrections for multi-shot 3D FMRI acquisitions. Neuroimage. 84: 394-405. PMID 24018307 DOI: 10.1016/j.neuroimage.2013.08.062  1
2014 Menke RA, Szewczyk-Krolikowski K, Jbabdi S, Jenkinson M, Talbot K, Mackay CE, Hu M. Comprehensive morphometry of subcortical grey matter structures in early-stage Parkinson's disease. Human Brain Mapping. 35: 1681-90. PMID 23861334 DOI: 10.1002/hbm.22282  1
2014 Tziortzi AC, Haber SN, Searle GE, Tsoumpas C, Long CJ, Shotbolt P, Douaud G, Jbabdi S, Behrens TE, Rabiner EA, Jenkinson M, Gunn RN. Connectivity-based functional analysis of dopamine release in the striatum using diffusion-weighted MRI and positron emission tomography. Cerebral Cortex (New York, N.Y. : 1991). 24: 1165-77. PMID 23283687 DOI: 10.1093/cercor/bhs397  1
2014 Levy AAL, Jenkinson M, Ingram W, Lambert FH, Huntingford C, Allen M. Increasing the detectability of external influence on precipitation by correcting feature location in GCMs Journal of Geophysical Research Atmospheres. 119: 12466-12478. DOI: 10.1002/2014JD022358  1
2014 Levy AAL, Jenkinson M, Ingram W, Allen M. Correcting precipitation feature location in general circulation models Journal of Geophysical Research Atmospheres. 119: 13350-13369. DOI: 10.1002/2014JD022357  1
2013 Robinson EC, Jbabdi S, Andersson J, Smith S, Glasser MF, Van Essen DC, Burgess G, Harms MP, Barch DM, Barch DM. Multimodal surface matching: fast and generalisable cortical registration using discrete optimisation. Information Processing in Medical Imaging : Proceedings of the ... Conference. 23: 475-86. PMID 24683992 DOI: 10.1007/978-3-642-38868-2_40  1
2013 Heinrich MP, Jenkinson M, Papiez BW, Glesson FV, Brady SM, Schnabel JA. Edge- and detail-preserving sparse image representations for deformable registration of chest MRI and CT volumes. Information Processing in Medical Imaging : Proceedings of the ... Conference. 23: 463-74. PMID 24683991 DOI: 10.1007/978-3-642-38868-2_39  1
2013 Bhushan M, Schnabel JA, Chappell M, Gleeson F, Anderson M, Franklin J, Brady SM, Jenkinson M. The impact of heterogeneity and uncertainty on prediction of response to therapy using dynamic MRI data. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 16: 316-23. PMID 24505681 DOI: 10.1007/978-3-642-40811-3_40  1
2013 Heinrich MP, Jenkinson M, Papiez BW, Brady SM, Schnabel JA. Towards realtime multimodal fusion for image-guided interventions using self-similarities. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 16: 187-94. PMID 24505665 DOI: 10.1007/978-3-642-40811-3_24  1
2013 Smith SM, Vidaurre D, Beckmann CF, Glasser MF, Jenkinson M, Miller KL, Nichols TE, Robinson EC, Salimi-Khorshidi G, Woolrich MW, Barch DM, Uğurbil K, Van Essen DC. Functional connectomics from resting-state fMRI. Trends in Cognitive Sciences. 17: 666-82. PMID 24238796 DOI: 10.1016/j.tics.2013.09.016  1
2013 Brooks JC, Faull OK, Pattinson KT, Jenkinson M. Physiological noise in brainstem FMRI. Frontiers in Human Neuroscience. 7: 623. PMID 24109446 DOI: 10.3389/fnhum.2013.00623  1
2013 Zamboni G, Wilcock GK, Douaud G, Drazich E, McCulloch E, Filippini N, Tracey I, Brooks JC, Smith SM, Jenkinson M, Mackay CE. Resting functional connectivity reveals residual functional activity in Alzheimer's disease. Biological Psychiatry. 74: 375-83. PMID 23726515 DOI: 10.1016/j.biopsych.2013.04.015  1
2013 Marcus DS, Harms MP, Snyder AZ, Jenkinson M, Wilson JA, Glasser MF, Barch DM, Archie KA, Burgess GC, Ramaratnam M, Hodge M, Horton W, Herrick R, Olsen T, McKay M, et al. Human Connectome Project informatics: quality control, database services, and data visualization. Neuroimage. 80: 202-19. PMID 23707591 DOI: 10.1016/j.neuroimage.2013.05.077  1
2013 Sotiropoulos SN, Jbabdi S, Xu J, Andersson JL, Moeller S, Auerbach EJ, Glasser MF, Hernandez M, Sapiro G, Jenkinson M, Feinberg DA, Yacoub E, Lenglet C, Van Essen DC, Ugurbil K, et al. Advances in diffusion MRI acquisition and processing in the Human Connectome Project. Neuroimage. 80: 125-43. PMID 23702418 DOI: 10.1016/j.neuroimage.2013.05.057  1
2013 Glasser MF, Sotiropoulos SN, Wilson JA, Coalson TS, Fischl B, Andersson JL, Xu J, Jbabdi S, Webster M, Polimeni JR, Van Essen DC, Jenkinson M. The minimal preprocessing pipelines for the Human Connectome Project. Neuroimage. 80: 105-24. PMID 23668970 DOI: 10.1016/j.neuroimage.2013.04.127  1
2013 Matthews L, Marasco R, Jenkinson M, Küker W, Luppe S, Leite MI, Giorgio A, De Stefano N, Robertson N, Johansen-Berg H, Evangelou N, Palace J. Distinction of seropositive NMO spectrum disorder and MS brain lesion distribution. Neurology. 80: 1330-7. PMID 23486868 DOI: 10.1212/WNL.0b013e3182887957  1
2013 Heinrich MP, Jenkinson M, Brady M, Schnabel JA. MRF-based deformable registration and ventilation estimation of lung CT. Ieee Transactions On Medical Imaging. 32: 1239-48. PMID 23475350 DOI: 10.1109/TMI.2013.2246577  1
2013 Arun T, Tomassini V, Sbardella E, de Ruiter MB, Matthews L, Leite MI, Gelineau-Morel R, Cavey A, Vergo S, Craner M, Fugger L, Rovira A, Jenkinson M, Palace J. Targeting ASIC1 in primary progressive multiple sclerosis: evidence of neuroprotection with amiloride. Brain : a Journal of Neurology. 136: 106-15. PMID 23365093 DOI: 10.1093/brain/aws325  1
2013 Stagg CJ, Knight S, Talbot K, Jenkinson M, Maudsley AA, Turner MR. Whole-brain magnetic resonance spectroscopic imaging measures are related to disability in ALS. Neurology. 80: 610-5. PMID 23325907 DOI: 10.1212/WNL.0b013e318281ccec  1
2013 Vrenken H, Jenkinson M, Horsfield MA, Battaglini M, van Schijndel RA, Rostrup E, Geurts JJ, Fisher E, Zijdenbos A, Ashburner J, Miller DH, Filippi M, Fazekas F, Rovaris M, Rovira A, et al. Recommendations to improve imaging and analysis of brain lesion load and atrophy in longitudinal studies of multiple sclerosis. Journal of Neurology. 260: 2458-71. PMID 23263472 DOI: 10.1007/s00415-012-6762-5  1
2013 Zamboni G, de Jager CA, Drazich E, Douaud G, Jenkinson M, Smith AD, Tracey I, Wilcock GK. Structural and functional bases of visuospatial associative memory in older adults. Neurobiology of Aging. 34: 961-72. PMID 22883909 DOI: 10.1016/j.neurobiolaging.2012.07.011  1
2013 Zamboni G, Drazich E, McCulloch E, Filippini N, Mackay CE, Jenkinson M, Tracey I, Wilcock GK. Neuroanatomy of impaired self-awareness in Alzheimer's disease and mild cognitive impairment. Cortex; a Journal Devoted to the Study of the Nervous System and Behavior. 49: 668-78. PMID 22677047 DOI: 10.1016/j.cortex.2012.04.011  1
2013 Levy AAL, Ingram W, Jenkinson M, Huntingford C, Lambert FH, Allen M. Can correcting feature location in simulated mean climate improve agreement on projected changes? Geophysical Research Letters. 40: 354-358. DOI: 10.1029/2012GL053964  1
2012 Heinrich MP, Jenkinson M, Sir Michael Brady, Schnabel JA. Globally optimal deformable registration on a minimum spanning tree using dense displacement sampling. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 15: 115-22. PMID 23286121  1
2012 Kolasinski J, Stagg CJ, Chance SA, Deluca GC, Esiri MM, Chang EH, Palace JA, McNab JA, Jenkinson M, Miller KL, Johansen-Berg H. A combined post-mortem magnetic resonance imaging and quantitative histological study of multiple sclerosis pathology. Brain : a Journal of Neurology. 135: 2938-51. PMID 23065787 DOI: 10.1093/brain/aws242  1
2012 Sexton CE, Le Masurier M, Allan CL, Jenkinson M, McDermott L, Kalu UG, Herrmann LL, Bradley KM, Mackay CE, Ebmeier KP. Magnetic resonance imaging in late-life depression: vascular and glucocorticoid cascade hypotheses. The British Journal of Psychiatry : the Journal of Mental Science. 201: 46-51. PMID 22753853 DOI: 10.1192/bjp.bp.111.105361  1
2012 Heinrich MP, Jenkinson M, Bhushan M, Matin T, Gleeson FV, Brady SM, Schnabel JA. MIND: modality independent neighbourhood descriptor for multi-modal deformable registration. Medical Image Analysis. 16: 1423-35. PMID 22722056 DOI: 10.1016/j.media.2012.05.008  1
2012 Brooks JC, Kong Y, Lee MC, Warnaby CE, Wanigasekera V, Jenkinson M, Tracey I. Stimulus site and modality dependence of functional activity within the human spinal cord. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 6231-9. PMID 22553029 DOI: 10.1523/JNEUROSCI.2543-11.2012  1
2012 Popescu V, Battaglini M, Hoogstrate WS, Verfaillie SC, Sluimer IC, van Schijndel RA, van Dijk BW, Cover KS, Knol DL, Jenkinson M, Barkhof F, de Stefano N, Vrenken H. Optimizing parameter choice for FSL-Brain Extraction Tool (BET) on 3D T1 images in multiple sclerosis. Neuroimage. 61: 1484-94. PMID 22484407 DOI: 10.1016/j.neuroimage.2012.03.074  1
2012 Smith SM, Miller KL, Moeller S, Xu J, Auerbach EJ, Woolrich MW, Beckmann CF, Jenkinson M, Andersson J, Glasser MF, Van Essen DC, Feinberg DA, Yacoub ES, Ugurbil K. Temporally-independent functional modes of spontaneous brain activity. Proceedings of the National Academy of Sciences of the United States of America. 109: 3131-6. PMID 22323591 DOI: 10.1073/pnas.1121329109  1
2012 Kincses ZT, Szabó N, Valálik I, Kopniczky Z, Dézsi L, Klivényi P, Jenkinson M, Király A, Babos M, Vörös E, Barzó P, Vécsei L. Target identification for stereotactic thalamotomy using diffusion tractography. Plos One. 7: e29969. PMID 22238685 DOI: 10.1371/journal.pone.0029969  1
2012 Kong Y, Jenkinson M, Andersson J, Tracey I, Brooks JC. Assessment of physiological noise modelling methods for functional imaging of the spinal cord. Neuroimage. 60: 1538-49. PMID 22178812 DOI: 10.1016/j.neuroimage.2011.11.077  1
2012 Jenkinson M, Beckmann CF, Behrens TE, Woolrich MW, Smith SM. FSL. Neuroimage. 62: 782-90. PMID 21979382 DOI: 10.1016/j.neuroimage.2011.09.015  1
2012 Gelineau-Morel R, Tomassini V, Jenkinson M, Johansen-Berg H, Matthews PM, Palace J. The effect of hypointense white matter lesions on automated gray matter segmentation in multiple sclerosis. Human Brain Mapping. 33: 2802-14. PMID 21976406 DOI: 10.1002/hbm.21402  1
2012 Wartolowska K, Hough MG, Jenkinson M, Andersson J, Wordsworth BP, Tracey I. Structural changes of the brain in rheumatoid arthritis. Arthritis and Rheumatism. 64: 371-9. PMID 21905009 DOI: 10.1002/art.33326  1
2012 Battaglini M, Jenkinson M, De Stefano N. Evaluating and reducing the impact of white matter lesions on brain volume measurements. Human Brain Mapping. 33: 2062-71. PMID 21882300 DOI: 10.1002/hbm.21344  1
2012 Tondelli M, Wilcock GK, Nichelli P, De Jager CA, Jenkinson M, Zamboni G. Structural MRI changes detectable up to ten years before clinical Alzheimer's disease. Neurobiology of Aging. 33: 825.e25-36. PMID 21782287 DOI: 10.1016/j.neurobiolaging.2011.05.018  1
2012 Heinrich MP, Jenkinson M, Brady SM, Schnabel JA. Textural mutual information based on cluster trees for multimodal deformable registration Proceedings - International Symposium On Biomedical Imaging. 1471-1474. DOI: 10.1109/ISBI.2012.6235849  1
2012 Jenkinson M. Registration, atlases and cortical flattening Functional Magnetic Resonance Imaging: An Introduction to Methods. DOI: 10.1093/acprof:oso/9780192630711.003.0015  1
2011 Sallet J, Mars RB, Noonan MP, Andersson JL, O'Reilly JX, Jbabdi S, Croxson PL, Jenkinson M, Miller KL, Rushworth MF. Social network size affects neural circuits in macaques. Science (New York, N.Y.). 334: 697-700. PMID 22053054 DOI: 10.1126/science.1210027  1
2011 Bhushan M, Schnabel JA, Risser L, Heinrich MP, Brady JM, Jenkinson M. Motion correction and parameter estimation in dceMRI sequences: application to colorectal cancer. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 14: 476-83. PMID 22003652 DOI: 10.1007/978-3-642-23623-5_60  1
2011 Heinrich MP, Jenkinson M, Bhushan M, Matin T, Gleeson FV, Brady JM, Schnabel JA. Non-local shape descriptor: a new similarity metric for deformable multi-modal registration. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 14: 541-8. PMID 21995071 DOI: 10.1007/978-3-642-23629-7_66  1
2011 Marcus DS, Harwell J, Olsen T, Hodge M, Glasser MF, Prior F, Jenkinson M, Laumann T, Curtiss SW, Van Essen DC. Informatics and data mining tools and strategies for the human connectome project. Frontiers in Neuroinformatics. 5: 4. PMID 21743807 DOI: 10.3389/fninf.2011.00004  0.44
2011 Murphy K, van Ginneken B, Reinhardt JM, Kabus S, Ding K, Deng X, Cao K, Du K, Christensen GE, Garcia V, Vercauteren T, Ayache N, Commowick O, Malandain G, Glocker B, ... ... Jenkinson M, et al. Evaluation of registration methods on thoracic CT: the EMPIRE10 challenge. Ieee Transactions On Medical Imaging. 30: 1901-20. PMID 21632295 DOI: 10.1109/TMI.2011.2158349  1
2011 Nunes RG, Drobnjak I, Clare S, Jezzard P, Jenkinson M. Performance of single spin-echo and doubly refocused diffusion-weighted sequences in the presence of eddy current fields with multiple components. Magnetic Resonance Imaging. 29: 659-67. PMID 21531107 DOI: 10.1016/j.mri.2011.02.015  1
2011 Miller KL, Stagg CJ, Douaud G, Jbabdi S, Smith SM, Behrens TE, Jenkinson M, Chance SA, Esiri MM, Voets NL, Jenkinson N, Aziz TZ, Turner MR, Johansen-Berg H, McNab JA. Diffusion imaging of whole, post-mortem human brains on a clinical MRI scanner. Neuroimage. 57: 167-81. PMID 21473920 DOI: 10.1016/j.neuroimage.2011.03.070  1
2011 Patenaude B, Smith SM, Kennedy DN, Jenkinson M. A Bayesian model of shape and appearance for subcortical brain segmentation. Neuroimage. 56: 907-22. PMID 21352927 DOI: 10.1016/j.neuroimage.2011.02.046  1
2011 Bishop CA, Jenkinson M, Andersson J, Declerck J, Merhof D. Novel Fast Marching for Automated Segmentation of the Hippocampus (FMASH): method and validation on clinical data. Neuroimage. 55: 1009-19. PMID 21195778 DOI: 10.1016/j.neuroimage.2010.12.071  1
2011 Kincses ZT, Ropele S, Jenkinson M, Khalil M, Petrovic K, Loitfelder M, Langkammer C, Aspeck E, Wallner-Blazek M, Fuchs S, Jehna M, Schmidt R, Vécsei L, Fazekas F, Enzinger C. Lesion probability mapping to explain clinical deficits and cognitive performance in multiple sclerosis. Multiple Sclerosis (Houndmills, Basingstoke, England). 17: 681-9. PMID 21177325 DOI: 10.1177/1352458510391342  1
2011 Tziortzi AC, Searle GE, Tzimopoulou S, Salinas C, Beaver JD, Jenkinson M, Laruelle M, Rabiner EA, Gunn RN. Imaging dopamine receptors in humans with [11C]-(+)-PHNO: dissection of D3 signal and anatomy. Neuroimage. 54: 264-77. PMID 20600980 DOI: 10.1016/j.neuroimage.2010.06.044  1
2011 Tziortzi A, Searle G, Tsoumpas C, Long C, Shotbolt P, Rabiner E, Jenkinson M, Gunn RN. MR-DTI and PET multimodal imaging of dopamine release within subdivisions of basal ganglia Journal of Physics: Conference Series. 317. DOI: 10.1088/1742-6596/317/1/012005  1
2010 Gallichan D, Andersson JL, Jenkinson M, Robson MD, Miller KL. Reducing distortions in diffusion-weighted echo planar imaging with a dual-echo blip-reversed sequence. Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine. 64: 382-90. PMID 20665782 DOI: 10.1002/mrm.22318  1
2010 Drobnjak I, Pell GS, Jenkinson M. Simulating the effects of time-varying magnetic fields with a realistic simulated scanner. Magnetic Resonance Imaging. 28: 1014-21. PMID 20418038 DOI: 10.1016/j.mri.2010.03.029  1
2010 Zarei M, Patenaude B, Damoiseaux J, Morgese C, Smith S, Matthews PM, Barkhof F, Rombouts SA, Sanz-Arigita E, Jenkinson M. Combining shape and connectivity analysis: an MRI study of thalamic degeneration in Alzheimer's disease. Neuroimage. 49: 1-8. PMID 19744568 DOI: 10.1016/j.neuroimage.2009.09.001  1
2010 Bishopy CA, Jenkinson M, Declerck J, Merhof D. Evaluation of hippocampal segmentation methods for healthy and pathological subjects Eg Vcbm 2010 - Eurographics Workshop On Visual Computing For Biology and Medicine. 17-24. DOI: 10.2312/VCBM/VCBM10/017-024  1
2010 Babalola KO, Patenaude B, Aljabar P, Schnabel J, Kennedy D, Crum W, Smith S, Cootes T, Jenkinson M, Rueckert D. Corrigendum to "An evaluation of four automatic methods of segmenting the subcortical structures in the brain" [NeuroImage 47 (2009) 1435-1447] (DOI:10.1016/j.neuroimage.2009.05.029) Neuroimage. 49: 1152. DOI: 10.1016/j.neuroimage.2009.08.005  1
2009 Poynton C, Jenkinson M, Wells W. Atlas-based improved prediction of magnetic field inhomogeneity for distortion correction of EPI data. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 12: 951-9. PMID 20426203 DOI: 10.1007/978-3-642-04271-3_115  1
2009 Petrović A, Smith SM, Menke RA, Jenkinson M. Methods for tractography-driven surface registration of brain structures. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 12: 705-12. PMID 20426050  1
2009 Babalola KO, Patenaude B, Aljabar P, Schnabel J, Kennedy D, Crum W, Smith S, Cootes T, Jenkinson M, Rueckert D. An evaluation of four automatic methods of segmenting the subcortical structures in the brain. Neuroimage. 47: 1435-47. PMID 19463960 DOI: 10.1016/j.neuroimage.2009.05.029  1
2009 Klein A, Andersson J, Ardekani BA, Ashburner J, Avants B, Chiang MC, Christensen GE, Collins DL, Gee J, Hellier P, Song JH, Jenkinson M, Lepage C, Rueckert D, Thompson P, et al. Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. Neuroimage. 46: 786-802. PMID 19195496 DOI: 10.1016/j.neuroimage.2008.12.037  1
2009 Woolrich MW, Jbabdi S, Patenaude B, Chappell M, Makni S, Behrens T, Beckmann C, Jenkinson M, Smith SM. Bayesian analysis of neuroimaging data in FSL. Neuroimage. 45: S173-86. PMID 19059349 DOI: 10.1016/j.neuroimage.2008.10.055  1
2009 Sun D, Stuart GW, Jenkinson M, Wood SJ, McGorry PD, Velakoulis D, van Erp TG, Thompson PM, Toga AW, Smith DJ, Cannon TD, Pantelis C. Brain surface contraction mapped in first-episode schizophrenia: a longitudinal magnetic resonance imaging study. Molecular Psychiatry. 14: 976-86. PMID 18607377 DOI: 10.1038/mp.2008.34  1
2009 Petrović A, Smith SM, Menke RA, Jenkinson M. Methods for tractography-driven surface registration of brain structures Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5761: 705-712. DOI: 10.1007/978-3-642-04268-3_87  1
2008 Harvey AK, Pattinson KT, Brooks JC, Mayhew SD, Jenkinson M, Wise RG. Brainstem functional magnetic resonance imaging: disentangling signal from physiological noise. Journal of Magnetic Resonance Imaging : Jmri. 28: 1337-44. PMID 19025940 DOI: 10.1002/jmri.21623  1
2008 Poynton C, Jenkinson M, Whalen S, Golby AJ, Wells W. Fieldmap-free retrospective registration and distortion correction for EPI-based functional imaging. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 11: 271-9. PMID 18982615 DOI: 10.1007/978-3-540-85990-1-33  1
2008 Babalola KO, Patenaude B, Aljabar P, Schnabel J, Kennedy D, Crum W, Smith S, Cootes TF, Jenkinson M, Rueckert D. Comparison and evaluation of segmentation techniques for subcortical structures in brain MRI. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 11: 409-16. PMID 18979773 DOI: 10.1007/978-3-540-85988-8_49  1
2008 Brooks JC, Beckmann CF, Miller KL, Wise RG, Porro CA, Tracey I, Jenkinson M. Physiological noise modelling for spinal functional magnetic resonance imaging studies. Neuroimage. 39: 680-92. PMID 17950627 DOI: 10.1016/j.neuroimage.2007.09.018  1
2007 Douaud G, Smith S, Jenkinson M, Behrens T, Johansen-Berg H, Vickers J, James S, Voets N, Watkins K, Matthews PM, James A. Anatomically related grey and white matter abnormalities in adolescent-onset schizophrenia. Brain : a Journal of Neurology. 130: 2375-86. PMID 17698497 DOI: 10.1093/brain/awm184  1
2007 Zöllei L, Jenkinson M, Timoner S, Wells W. A marginalized MAP approach and EM optimization for pair-wise registration. Information Processing in Medical Imaging : Proceedings of the ... Conference. 20: 662-74. PMID 17633738  1
2007 Smith SM, Rao A, De Stefano N, Jenkinson M, Schott JM, Matthews PM, Fox NC. Longitudinal and cross-sectional analysis of atrophy in Alzheimer's disease: cross-validation of BSI, SIENA and SIENAX. Neuroimage. 36: 1200-6. PMID 17537648 DOI: 10.1016/j.neuroimage.2007.04.035  1
2007 Smith SM, Johansen-Berg H, Jenkinson M, Rueckert D, Nichols TE, Miller KL, Robson MD, Jones DK, Klein JC, Bartsch AJ, Behrens TE. Acquisition and voxelwise analysis of multi-subject diffusion data with tract-based spatial statistics. Nature Protocols. 2: 499-503. PMID 17406613 DOI: 10.1038/nprot.2007.45  1
2007 Bartsch AJ, Homola G, Biller A, Smith SM, Weijers HG, Wiesbeck GA, Jenkinson M, De Stefano N, Solymosi L, Bendszus M. Manifestations of early brain recovery associated with abstinence from alcoholism. Brain : a Journal of Neurology. 130: 36-47. PMID 17178742 DOI: 10.1093/brain/awl303  0.8
2007 Zarei M, Johansen-Berg H, Jenkinson M, Ciccarelli O, Thompson AJ, Matthews PM. Two-dimensional population map of cortical connections in the human internal capsule. Journal of Magnetic Resonance Imaging : Jmri. 25: 48-54. PMID 17152053 DOI: 10.1002/jmri.20810  1
2007 Smith S, Jenkinson M, Beckmann C, Miller K, Woolrich M. Meaningful design and contrast estimability in FMRI. Neuroimage. 34: 127-36. PMID 17070706 DOI: 10.1016/j.neuroimage.2006.09.019  1
2007 Bannister PR, Michael Brady J, Jenkinson M. Integrating temporal information with a non-rigid method of motion correction for functional magnetic resonance images Image and Vision Computing. 25: 311-320. DOI: 10.1016/j.imavis.2005.10.002  1
2006 Babalola KO, Cootes TF, Patenaude B, Rao A, Jenkinson M. Comparing the similarity of statistical shape models using the Bhattacharya metric. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 9: 142-50. PMID 17354884  0.76
2006 Drobnjak I, Gavaghan D, Süli E, Pitt-Francis J, Jenkinson M. Development of a functional magnetic resonance imaging simulator for modeling realistic rigid-body motion artifacts. Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine. 56: 364-80. PMID 16841304 DOI: 10.1002/mrm.20939  0.56
2006 Smith SM, Jenkinson M, Johansen-Berg H, Rueckert D, Nichols TE, Mackay CE, Watkins KE, Ciccarelli O, Cader MZ, Matthews PM, Behrens TE. Tract-based spatial statistics: voxelwise analysis of multi-subject diffusion data. Neuroimage. 31: 1487-505. PMID 16624579 DOI: 10.1016/j.neuroimage.2006.02.024  1
2006 Beckmann CF, Jenkinson M, Woolrich MW, Behrens TE, Flitney DE, Devlin JT, Smith SM. Applying FSL to the FIAC data: model-based and model-free analysis of voice and sentence repetition priming. Human Brain Mapping. 27: 380-91. PMID 16565953 DOI: 10.1002/hbm.20246  1
2006 Behrens TE, Jenkinson M, Robson MD, Smith SM, Johansen-Berg H. A consistent relationship between local white matter architecture and functional specialisation in medial frontal cortex. Neuroimage. 30: 220-7. PMID 16271482 DOI: 10.1016/j.neuroimage.2005.09.036  1
2005 Crum WR, Camara O, Rueckert D, Bhatia KK, Jenkinson M, Hill DL. Generalised overlap measures for assessment of pairwise and groupwise image registration and segmentation. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 8: 99-106. PMID 16685834  1
2005 Bridge H, Clare S, Jenkinson M, Jezzard P, Parker AJ, Matthews PM. Independent anatomical and functional measures of the V1/V2 boundary in human visual cortex. Journal of Vision. 5: 93-102. PMID 15831070 DOI: 10:1167/5.2.1  1
2005 Osterbauer RA, Matthews PM, Jenkinson M, Beckmann CF, Hansen PC, Calvert GA. Color of scents: chromatic stimuli modulate odor responses in the human brain. Journal of Neurophysiology. 93: 3434-41. PMID 15689393 DOI: 10.1152/jn.00555.2004  1
2005 Smith SM, Beckmann CF, Ramnani N, Woolrich MW, Bannister PR, Jenkinson M, Matthews PM, McGonigle DJ. Variability in fMRI: a re-examination of inter-session differences. Human Brain Mapping. 24: 248-57. PMID 15654698 DOI: 10.1002/hbm.20080  1
2004 Smith SM, Jenkinson M, Woolrich MW, Beckmann CF, Behrens TE, Johansen-Berg H, Bannister PR, De Luca M, Drobnjak I, Flitney DE, Niazy RK, Saunders J, Vickers J, Zhang Y, De Stefano N, et al. Advances in functional and structural MR image analysis and implementation as FSL. Neuroimage. 23: S208-19. PMID 15501092 DOI: 10.1016/j.neuroimage.2004.07.051  1
2004 Jenkinson M, Wilson JL, Jezzard P. Perturbation method for magnetic field calculations of nonconductive objects. Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine. 52: 471-7. PMID 15334564 DOI: 10.1002/mrm.20194  1
2004 Woolrich MW, Behrens TE, Beckmann CF, Jenkinson M, Smith SM. Multilevel linear modelling for FMRI group analysis using Bayesian inference. Neuroimage. 21: 1732-47. PMID 15050594 DOI: 10.1016/j.neuroimage.2003.12.023  0.8
2004 Woolrich MW, Jenkinson M, Brady JM, Smith SM. Fully Bayesian spatio-temporal modeling of FMRI data. Ieee Transactions On Medical Imaging. 23: 213-31. PMID 14964566 DOI: 10.1109/TMI.2003.823065  1
2003 Behrens TE, Woolrich MW, Jenkinson M, Johansen-Berg H, Nunes RG, Clare S, Matthews PM, Brady JM, Smith SM. Characterization and propagation of uncertainty in diffusion-weighted MR imaging. Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine. 50: 1077-88. PMID 14587019 DOI: 10.1002/mrm.10609  0.36
2003 Beckmann CF, Jenkinson M, Smith SM. General multilevel linear modeling for group analysis in FMRI. Neuroimage. 20: 1052-63. PMID 14568475 DOI: 10.1016/S1053-8119(03)00435-X  0.8
2003 Wilson JL, Jenkinson M, Jezzard P. Protocol to determine the optimal intraoral passive shim for minimisation of susceptibility artifact in human inferior frontal cortex. Neuroimage. 19: 1802-11. PMID 12948734 DOI: 10.1016/S1053-8119(03)00225-8  1
2003 Parry A, Clare S, Jenkinson M, Smith S, Palace J, Matthews PM. MRI brain T1 relaxation time changes in MS patients increase over time in both the white matter and the cortex. Journal of Neuroimaging : Official Journal of the American Society of Neuroimaging. 13: 234-9. PMID 12889170  0.96
2003 Walters NB, Egan GF, Kril JJ, Kean M, Waley P, Jenkinson M, Watson JD. In vivo identification of human cortical areas using high-resolution MRI: an approach to cerebral structure-function correlation. Proceedings of the National Academy of Sciences of the United States of America. 100: 2981-6. PMID 12601170 DOI: 10.1073/pnas.0437896100  1
2002 Smith SM, Zhang Y, Jenkinson M, Chen J, Matthews PM, Federico A, De Stefano N. Accurate, robust, and automated longitudinal and cross-sectional brain change analysis. Neuroimage. 17: 479-89. PMID 12482100  0.8
2002 Wilson JL, Jenkinson M, Jezzard P. Optimization of static field homogeneity in human brain using diamagnetic passive shims. Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine. 48: 906-14. PMID 12418007 DOI: 10.1002/mrm.10298  1
2002 Wilson JL, Jenkinson M, de Araujo I, Kringelbach ML, Rolls ET, Jezzard P. Fast, fully automated global and local magnetic field optimization for fMRI of the human brain. Neuroimage. 17: 967-76. PMID 12377170 DOI: 10.1016/S1053-8119(02)91172-9  1
2002 Jenkinson M, Bannister P, Brady M, Smith S. Improved optimization for the robust and accurate linear registration and motion correction of brain images. Neuroimage. 17: 825-41. PMID 12377157  0.96
2002 Parry A, Clare S, Jenkinson M, Smith S, Palace J, Matthews PM. White matter and lesion T1 relaxation times increase in parallel and correlate with disability in multiple sclerosis. Journal of Neurology. 249: 1279-86. PMID 12242554 DOI: 10.1007/s00415-002-0837-7  0.96
2001 Jenkinson M, Smith S. A global optimisation method for robust affine registration of brain images. Medical Image Analysis. 5: 143-56. PMID 11516708  0.96
2001 Smith SM, De Stefano N, Jenkinson M, Matthews PM. Normalized accurate measurement of longitudinal brain change. Journal of Computer Assisted Tomography. 25: 466-75. PMID 11351200  0.8
2000 Reddy H, Narayanan S, Arnoutelis R, Jenkinson M, Antel J, Matthews PM, Arnold DL. Evidence for adaptive functional changes in the cerebral cortex with axonal injury from multiple sclerosis. Brain : a Journal of Neurology. 123: 2314-20. PMID 11050031  0.76
2000 Lee M, Reddy H, Johansen-Berg H, Pendlebury S, Jenkinson M, Smith S, Palace J, Matthews PM. The motor cortex shows adaptive functional changes to brain injury from multiple sclerosis. Annals of Neurology. 47: 606-13. PMID 10805331 DOI: 10.1002/1531-8249(200005)47:5<606::AID-ANA8>3.0.CO;2-L  1
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