Jean Livet - Related publications

Affiliations: 
Harvard University, Cambridge, MA, United States 
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46 most relevant papers in past 60 days:
Year Citation  Score
2021 Liu M, Yang B, Hu M, Radda JSD, Chen Y, Jin S, Cheng Y, Wang S. Chromatin tracing and multiplexed imaging of nucleome architectures (MINA) and RNAs in single mammalian cells and tissue. Nature Protocols. PMID 33903756 DOI: 10.1038/s41596-021-00518-0   
2021 Abdeen AA, Cosgrove BD, Gersbach CA, Saha K. Integrating Biomaterials and Genome Editing Approaches to Advance Biomedical Science. Annual Review of Biomedical Engineering. PMID 33909475 DOI: 10.1146/annurev-bioeng-122019-121602   
2021 Jung N, Kim TK. Advances in higher-order chromatin architecture: the move towards 4D genome. Bmb Reports. PMID 33972012   
2021 Shi M, Shen Z, Zhang N, Wang L, Yu C, Yang Z. [CRISPR/Cas9 technology in disease research and therapy: a review]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 37: 1205-1228. PMID 33973436 DOI: 10.13345/j.cjb.200401   
2021 Bains W, Borriello E, Schulze-Makuch D. Evolution of default genetic control mechanisms. Plos One. 16: e0251568. PMID 33984070 DOI: 10.1371/journal.pone.0251568   
2021 Ciobanu D, Clum A, Ahrendt S, Andreopoulos WB, Salamov A, Chan S, Quandt CA, Foster B, Meier-Kolthoff JP, Tang YT, Schwientek P, Benny GL, Smith ME, Bauer D, Deshpande S, et al. A single-cell genomics pipeline for environmental microbial eukaryotes. Iscience. 24: 102290. PMID 33870123 DOI: 10.1016/j.isci.2021.102290   
2021 Zheng F, Kawabe Y, Murakami M, Takahashi M, Nishihata K, Yoshida S, Ito A, Kamihira M. LINE-1 vectors mediate recombinant antibody gene transfer by retrotransposition in Chinese hamster ovary cells. Biotechnology Journal. e2000620. PMID 33938150 DOI: 10.1002/biot.202000620   
2021 Ghosh Dasgupta M, Dev SA, Muneera Parveen AB, Sarath P, Sreekumar VB. Draft genome of Korthalsia laciniosa (Griff.) Mart., a climbing rattan elucidates its phylogenetic position. Genomics. 113: 2010-2022. PMID 33862180 DOI: 10.1016/j.ygeno.2021.04.023   
2021 Hassan H, Szalat R. Genetic Predictors of Mortality in Patients with Multiple Myeloma. The Application of Clinical Genetics. 14: 241-254. PMID 33953598 DOI: 10.2147/TACG.S262866   
2021 Miura H, Imafuku J, Kurosaki A, Sato M, Ma Y, Zhang G, Mizutani A, Kamimura K, Gurumurthy CB, Liu D, Ohtsuka M. Novel reporter mouse models useful for evaluating gene editing and for optimization of methods of delivering genome editing tools. Molecular Therapy. Nucleic Acids. 24: 325-336. PMID 33850636 DOI: 10.1016/j.omtn.2021.03.003   
2021 Gui Q, Deng S, Zhou Z, Cao W, Zhang X, Shi W, Cai X, Jiang W, Cui Z, Hu Z, Chen X. Transcriptome Analysis in Yeast Reveals the Externality of Position Effects. Molecular Biology and Evolution. PMID 33871622 DOI: 10.1093/molbev/msab104   
2021 Peterson D, Barone P, Lenderts B, Schwartz C, Feigenbutz L, St Clair G, Jones S, Svitashev S. Advances in Agrobacterium transformation and vector design result in high frequency targeted gene insertion in maize. Plant Biotechnology Journal. PMID 33934470 DOI: 10.1111/pbi.13613   
2021 Hong J, Gao R, Yang Y. CrepHAN: Cross-species prediction of enhancers by using hierarchical attention networks. Bioinformatics (Oxford, England). PMID 33978703 DOI: 10.1093/bioinformatics/btab349   
2021 Lin Z, Li H, He L, Jing Y, Pistolozzi M, Wang T, Ye Y. Efficient genome editing for Pseudomonas aeruginosa using CRISPR-Cas12a. Gene. 145693. PMID 33961975 DOI: 10.1016/j.gene.2021.145693   
2021 Kwon SB, Ernst J. Learning a genome-wide score of human-mouse conservation at the functional genomics level. Nature Communications. 12: 2495. PMID 33941776 DOI: 10.1038/s41467-021-22653-8   
2021 Bandyopadhyay S, Douglass J, Kapell S, Khan N, Feitosa-Suntheimer F, Klein JA, Temple J, Brown-Culbertson J, Tavares AH, Saeed M, Lau NC. DNA templates with blocked long 3' end single-stranded overhangs (BL3SSO) promote bona fide Cas9-stimulated homology-directed repair of long transgenes into endogenous gene loci. G3 (Bethesda, Md.). PMID 33989385 DOI: 10.1093/g3journal/jkab169   
2021 Zhang ZX, Wang LR, Xu YS, Jiang WT, Shi TQ, Sun XM, Huang H. Recent advances in the application of multiplex genome editing in Saccharomyces cerevisiae. Applied Microbiology and Biotechnology. PMID 33907890 DOI: 10.1007/s00253-021-11287-x   
2021 Zhang H, Ye L, Liu Q, Huang X. Genome assembly of Scorias spongiosa and comparative genomics provide insights into ecological adaptation of honeydew-dependent sooty mould fungi. Genomics. PMID 34022339 DOI: 10.1016/j.ygeno.2021.05.020   
2021 Vogan AA, Ament-Velásquez SL, Bastiaans E, Wallerman O, Saupe SJ, Suh A, Johannesson H. The , a massive transposon carrying meiotic drive genes. Genome Research. PMID 33875482 DOI: 10.1101/gr.267609.120   
2021 Potts RWA, Gutierrez AP, Penaloza CS, Regan T, Bean TP, Houston RD. Potential of genomic technologies to improve disease resistance in molluscan aquaculture. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 376: 20200168. PMID 33813884 DOI: 10.1098/rstb.2020.0168   
2021 Weng YM, Francoeur CB, Currie CR, Kavanaugh DH, Schoville SD. A high-quality carabid genome assembly provides insights into beetle genome evolution and cold adaptation. Molecular Ecology Resources. PMID 33938156 DOI: 10.1111/1755-0998.13409   
2021 Tao Y, Luo H, Xu J, Cruickshank A, Zhao X, Teng F, Hathorn A, Wu X, Liu Y, Shatte T, Jordan D, Jing H, Mace E. Extensive variation within the pan-genome of cultivated and wild sorghum. Nature Plants. PMID 34017083 DOI: 10.1038/s41477-021-00925-x   
2021 Miao J, Feng Q, Li Y, Zhao Q, Zhou C, Lu H, Fan D, Yan J, Lu Y, Tian Q, Li W, Weng Q, Zhang L, Zhao Y, Huang T, et al. Chromosome-scale assembly and analysis of biomass crop Miscanthus lutarioriparius genome. Nature Communications. 12: 2458. PMID 33911077 DOI: 10.1038/s41467-021-22738-4   
2021 Zhu D, Schieferecke AJ, Lopez PA, Schaffer DV. Adeno-Associated Virus Vector for Central Nervous System Gene Therapy. Trends in Molecular Medicine. PMID 33895085 DOI: 10.1016/j.molmed.2021.03.010   
2021 Maboko BB, Featherston J, Sibeko-Matjila KP, Mans BJ. Whole genome sequencing of Theileria parva using target capture. Genomics. 113: 429-438. PMID 33370583 DOI: 10.1016/j.ygeno.2020.12.033   
2021 Nargesi S, Kaboli S, Thekkiniath J, Heidari S, Keramati F, Seyedmousavi S, Hedayati MT. Recent Advances in Genome Editing Tools in Medical Mycology Research. Journal of Fungi (Basel, Switzerland). 7. PMID 33808382 DOI: 10.3390/jof7040257   
2021 Morowvat MH. CRISPeering: Bioengineering the Host Cells through CRISPR-Cas9 Genome Editing System as the Next-Generation of Cell Factories. Recent Patents On Biotechnology. PMID 33874877 DOI: 10.2174/1872208315666210419102117   
2021 Wang M, Li J, Wang P, Liu F, Liu Z, Zhao G, Xu Z, Pei L, Grover CE, Wendel JF, Wang K, Zhang X. Comparative genome analyses highlight transposon-mediated genome expansion and the evolutionary architecture of 3D genomic folding in cotton. Molecular Biology and Evolution. PMID 33973633 DOI: 10.1093/molbev/msab128   
2021 Berná L, Marquez P, Cabrera A, Greif G, Francia ME, Robello C. Reevaluation of the and genomes reveals misassembly, karyotype differences, and chromosomal rearrangements. Genome Research. 31: 823-833. PMID 33906964 DOI: 10.1101/gr.262832.120   
2021 Zhou J, Zhang S, Wang J, Shen H, Ai B, Gao W, Zhang C, Fei Q, Yuan D, Wu Z, Tembrock LR, Li S, Gu C, Liao X. Chloroplast genomes in Populus (Salicaceae): comparisons from an intensively sampled genus reveal dynamic patterns of evolution. Scientific Reports. 11: 9471. PMID 33947883 DOI: 10.1038/s41598-021-88160-4   
2021 Nechitaylo TY, Sandoval-Calderón M, Engl T, Wielsch N, Dunn DM, Goesmann A, Strohm E, Svatoš A, Dale C, Weiss RB, Kaltenpoth M. Incipient genome erosion and metabolic streamlining for antibiotic production in a defensive symbiont. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33883280 DOI: 10.1073/pnas.2023047118   
2021 Yu X, Wang P, Li J, Zhao Q, Ji C, Zhu Z, Zhai Y, Qin X, Zhou J, Yu H, Cheng X, Isshiki S, Jahn M, Doyle JJ, Ottosen CO, et al. Whole-Genome Sequence of Synthesized Allopolyploids in Reveals Insights into the Genome Evolution of Allopolyploidization. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 8: 2004222. PMID 33977063 DOI: 10.1002/advs.202004222   
2021 Brackett K, Mungale A, Lopez-Isidro M, Proctor DA, Najarro G, Arias C. CRISPR Interference Efficiently Silences Latent and Lytic Viral Genes in Kaposi's Sarcoma-Associated Herpesvirus-Infected Cells. Viruses. 13. PMID 33924938 DOI: 10.3390/v13050783   
2021 Li M, Guo G, Pidon H, Melzer M, Prina AR, Börner T, Stein N. , , Is a Strong Candidate Gene for Barley Variegation Mutant as Revealed by Genetic Mapping and Genomic Re-sequencing. Frontiers in Plant Science. 12: 664085. PMID 33936155 DOI: 10.3389/fpls.2021.664085   
2021 Yang C, Zhou Y, Marcus S, Formenti G, Bergeron LA, Song Z, Bi X, Bergman J, Rousselle MMC, Zhou C, Zhou L, Deng Y, Fang M, Xie D, Zhu Y, et al. Evolutionary and biomedical insights from a marmoset diploid genome assembly. Nature. PMID 33910227 DOI: 10.1038/s41586-021-03535-x   
2021 Crocker H, Gorda B, Pelosse M, Thimiri Govinda Raj DB, Berger I. SynBac: Enhanced Baculovirus Genomes by Iterative Recombineering. Methods in Molecular Biology (Clifton, N.J.). 2305: 141-152. PMID 33950388 DOI: 10.1007/978-1-0716-1406-8_7   
2021 Lui LM, Nielsen TN, Arkin AP. A method for achieving complete microbial genomes and improving bins from metagenomics data. Plos Computational Biology. 17: e1008972. PMID 33961626 DOI: 10.1371/journal.pcbi.1008972   
2021 Yu W, Gao J, Zhai X, Zhou YJ. Screening neutral sites for metabolic engineering of methylotrophic yeast . Synthetic and Systems Biotechnology. 6: 63-68. PMID 33869812 DOI: 10.1016/j.synbio.2021.03.001   
2021 Zhu X, Wang J, Sun B, Ren C, Yang T, Ding J. An efficient ensemble method for missing value imputation in microarray gene expression data. Bmc Bioinformatics. 22: 188. PMID 33849444 DOI: 10.1186/s12859-021-04109-4   
2021 Teng M, Yao Y, Nair V, Luo J. Latest Advances of Virology Research Using CRISPR/Cas9-Based Gene-Editing Technology and Its Application to Vaccine Development. Viruses. 13. PMID 33924851 DOI: 10.3390/v13050779   
2021 Sun A, Wang X, Yang S, Liu Y, Zhang G, Zhuang G. [A rapid and accurate method for herpesviral gnome editing]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 37: 1376-1384. PMID 33973450 DOI: 10.13345/j.cjb.200419   
2021 Tao X, Li M, Zhao T, Feng S, Zhang H, Wang L, Han J, Gao M, Lu K, Chen Q, Zhou B, Guan X. Neofunctionalization of a Polyploidization-Activated Cotton Long intergenic non-coding RNA DAN1 During Drought Stress Regulation. Plant Physiology. PMID 33871645 DOI: 10.1093/plphys/kiab179   
2021 Sun Z, Terragni J, Zhu Z, Zheng Y, Pradhan S. Aba-Seq: High-Resolution Enzymatic Mapping of Genomic 5-Hydroxymethylcytosine. Methods in Molecular Biology (Clifton, N.J.). 2272: 13-27. PMID 34009606 DOI: 10.1007/978-1-0716-1294-1_2   
2021 Wang M, Zhang L, Wang Z. Chromosomal-level reference genome of the neotropical tree Jacaranda mimosifolia D. Don. Genome Biology and Evolution. PMID 33944940 DOI: 10.1093/gbe/evab094   
2021 Yang LL, Niu JQ, Tang WW. The complete chloroplast genome of pioneering plant L. (Cyperaceae) in ecological restoration. Mitochondrial Dna. Part B, Resources. 6: 1335-1336. PMID 33889743 DOI: 10.1080/23802359.2021.1908865   
2021 Lin JC, Van Eenennaam AL. Electroporation-Mediated Genome Editing of Livestock Zygotes. Frontiers in Genetics. 12: 648482. PMID 33927751 DOI: 10.3389/fgene.2021.648482