| Year |
Citation |
Score |
| 2019 |
Liu J, Parrish JR, Hines J, Mansfield L, Finley RL. A proteome-wide screen of Campylobacter jejuni using protein microarrays identifies novel and conformational antigens. Plos One. 14: e0210351. PMID 30633767 DOI: 10.1371/Journal.Pone.0210351 |
0.381 |
|
| 2015 |
Zhang X, Cai J, Zheng Z, Polin L, Lin Z, Dandekar A, Li L, Sun F, Finley RL, Fang D, Yang ZQ, Zhang K. A novel ER-microtubule-binding protein, ERLIN2, stabilizes Cyclin B1 and regulates cell cycle progression. Cell Discovery. 1: 15024. PMID 27462423 DOI: 10.1038/Celldisc.2015.24 |
0.391 |
|
| 2014 |
Atikukke G, Albosta P, Zhang H, Finley RL. A role for Drosophila Cyclin J in oogenesis revealed by genetic interactions with the piRNA pathway. Mechanisms of Development. 133: 64-76. PMID 24946235 DOI: 10.1016/J.Mod.2014.06.001 |
0.344 |
|
| 2014 |
Murali T, Pacifico S, Finley RL. Integrating the interactome and the transcriptome of Drosophila. Bmc Bioinformatics. 15: 177. PMID 24913703 DOI: 10.1186/1471-2105-15-177 |
0.479 |
|
| 2013 |
Mairiang D, Zhang H, Sodja A, Murali T, Suriyaphol P, Malasit P, Limjindaporn T, Finley RL. Identification of new protein interactions between dengue fever virus and its hosts, human and mosquito. Plos One. 8: e53535. PMID 23326450 DOI: 10.1371/Journal.Pone.0053535 |
0.659 |
|
| 2013 |
Aras S, Pak O, Sommer N, Finley R, Hüttemann M, Weissmann N, Grossman LI. Oxygen-dependent expression of cytochrome c oxidase subunit 4-2 gene expression is mediated by transcription factors RBPJ, CXXC5 and CHCHD2. Nucleic Acids Research. 41: 2255-66. PMID 23303788 DOI: 10.1093/Nar/Gks1454 |
0.32 |
|
| 2012 |
Yu J, Murali T, Finley RL. Assigning confidence scores to protein-protein interactions. Methods in Molecular Biology (Clifton, N.J.). 812: 161-74. PMID 22218859 DOI: 10.1007/978-1-61779-455-1_9 |
0.486 |
|
| 2012 |
Roberts GG, Parrish JR, Mangiola BA, Finley RL. High-throughput yeast two-hybrid screening. Methods in Molecular Biology (Clifton, N.J.). 812: 39-61. PMID 22218853 DOI: 10.1007/978-1-61779-455-1_3 |
0.468 |
|
| 2011 |
Golemis EA, Serebriiskii I, Finley RL, Kolonin MG, Gyuris J, Brent R. Interaction trap/two-hybrid system to identify interacting proteins. Current Protocols in Cell Biology / Editorial Board, Juan S. Bonifacino ... [Et Al.]. Unit 17.3.. PMID 22161546 DOI: 10.1002/0471143030.Cb1703S53 |
0.551 |
|
| 2011 |
Friedman AA, Tucker G, Singh R, Yan D, Vinayagam A, Hu Y, Binari R, Hong P, Sun X, Porto M, Pacifico S, Murali T, Finley RL, Asara JM, Berger B, et al. Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. Science Signaling. 4: rs10. PMID 22028469 DOI: 10.1126/Scisignal.2002029 |
0.4 |
|
| 2011 |
Puliyappadamba VT, Wu W, Bevis D, Zhang L, Polin L, Kilkuskie R, Finley RL, Larsen SD, Levi E, Miller FR, Wali A, Rishi AK. Antagonists of anaphase-promoting complex (APC)-2-cell cycle and apoptosis regulatory protein (CARP)-1 interaction are novel regulators of cell growth and apoptosis. The Journal of Biological Chemistry. 286: 38000-17. PMID 21903591 DOI: 10.1074/Jbc.M111.222398 |
0.354 |
|
| 2011 |
Guest ST, Yu J, Liu D, Hines JA, Kashat MA, Finley RL. A protein network-guided screen for cell cycle regulators in Drosophila. Bmc Systems Biology. 5: 65. PMID 21548953 DOI: 10.1186/1752-0509-5-65 |
0.353 |
|
| 2011 |
Golemis EA, Serebriiskii I, Finley RL, Kolonin MG, Gyuris J, Brent R. Interaction trap/two-hybrid system to identify interacting proteins. Current Protocols in Neuroscience / Editorial Board, Jacqueline N. Crawley ... [Et Al.]. Unit 4.4. PMID 21462161 DOI: 10.1002/0471142301.ns0404s55 |
0.479 |
|
| 2011 |
Murali T, Pacifico S, Yu J, Guest S, Roberts GG, Finley RL. DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila. Nucleic Acids Research. 39: D736-43. PMID 21036869 DOI: 10.1093/Nar/Gkq1092 |
0.505 |
|
| 2010 |
Liu D, Guest S, Finley RL. Why cyclin Y? A highly conserved cyclin with essential functions. Fly. 4: 278-82. PMID 20699655 DOI: 10.4161/Fly.4.4.12881 |
0.36 |
|
| 2010 |
Liu D, Finley RL. Cyclin Y is a novel conserved cyclin essential for development in Drosophila. Genetics. 184: 1025-35. PMID 20100936 DOI: 10.1534/Genetics.110.114017 |
0.365 |
|
| 2010 |
Chen S, Liu D, Finley RL, Greenberg ML. Loss of mitochondrial DNA in the yeast cardiolipin synthase crd1 mutant leads to up-regulation of the protein kinase Swe1p that regulates the G2/M transition. The Journal of Biological Chemistry. 285: 10397-407. PMID 20086012 DOI: 10.1074/Jbc.M110.100784 |
0.326 |
|
| 2009 |
Golemis EA, Serebriiskii I, Finley RL, Kolonin MG, Gyuris J, Brent R. Interaction trap/two-hybrid system to identify interacting proteins. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit19.2. PMID 19688737 DOI: 10.1002/0471140864.Ps1902S57 |
0.551 |
|
| 2009 |
Schwartz AS, Yu J, Gardenour KR, Finley RL, Ideker T. Cost-effective strategies for completing the interactome. Nature Methods. 6: 55-61. PMID 19079254 DOI: 10.1038/Nmeth.1283 |
0.369 |
|
| 2009 |
Yu J, Finley RL. Combining multiple positive training sets to generate confidence scores for protein-protein interactions. Bioinformatics (Oxford, England). 25: 105-11. PMID 19010802 DOI: 10.1093/Bioinformatics/Btn597 |
0.429 |
|
| 2008 |
Yu J, Pacifico S, Liu G, Finley RL. DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions. Bmc Genomics. 9: 461. PMID 18840285 DOI: 10.1186/1471-2164-9-461 |
0.462 |
|
| 2008 |
Golemis EA, Serebriiskii I, Finley RL, Kolonin MG, Gyuris J, Brent R. Interaction trap/two-hybrid system to identify interacting proteins. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 20.1. PMID 18425763 DOI: 10.1002/0471142727.mb2001s82 |
0.479 |
|
| 2007 |
Jafari-Khouzani K, Soltanian-Zadeh H, Fotouhi F, Parrish JR, Finley RL. Automated segmentation and classification of high throughput yeast assay spots. Ieee Transactions On Medical Imaging. 26: 1401-11. PMID 17948730 DOI: 10.1109/Tmi.2007.900694 |
0.32 |
|
| 2007 |
Rajagopala SV, Titz B, Goll J, Parrish JR, Wohlbold K, McKevitt MT, Palzkill T, Mori H, Finley RL, Uetz P. The protein network of bacterial motility. Molecular Systems Biology. 3: 128. PMID 17667950 DOI: 10.1038/Msb4100166 |
0.539 |
|
| 2007 |
Parrish JR, Yu J, Liu G, Hines JA, Chan JE, Mangiola BA, Zhang H, Pacifico S, Fotouhi F, DiRita VJ, Ideker T, Andrews P, Finley RL. A proteome-wide protein interaction map for Campylobacter jejuni. Genome Biology. 8: R130. PMID 17615063 DOI: 10.1186/Gb-2007-8-7-R130 |
0.53 |
|
| 2006 |
Parrish JR, Gulyas KD, Finley RL. Yeast two-hybrid contributions to interactome mapping. Current Opinion in Biotechnology. 17: 387-93. PMID 16806892 DOI: 10.1016/J.Copbio.2006.06.006 |
0.469 |
|
| 2006 |
Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL. A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila. Bmc Bioinformatics. 7: 195. PMID 16603075 DOI: 10.1186/1471-2105-7-195 |
0.456 |
|
| 2005 |
Yin S, Li X, Meng Y, Finley RL, Sakr W, Yang H, Reddy N, Sheng S. Tumor-suppressive maspin regulates cell response to oxidative stress by direct interaction with glutathione S-transferase. The Journal of Biological Chemistry. 280: 34985-96. PMID 16049007 DOI: 10.1016/S0022-5347(05)00627-0 |
0.374 |
|
| 2005 |
Uetz P, Finley RL. From protein networks to biological systems. Febs Letters. 579: 1821-7. PMID 15763558 DOI: 10.1016/J.Febslet.2005.02.001 |
0.461 |
|
| 2005 |
Yu J, Fotouhi F, Finley RL. Combining bayesian networks and decision trees to predict Drosophila melanogaster protein-protein interactions Proceedings - International Workshop On Biomedical Data Engineering, Bmde2005. 2005. DOI: 10.1109/ICDE.2005.205 |
0.455 |
|
| 2004 |
Stanyon CA, Liu G, Mangiola BA, Patel N, Giot L, Kuang B, Zhang H, Zhong J, Finley RL. A Drosophila protein-interaction map centered on cell-cycle regulators. Genome Biology. 5: R96. PMID 15575970 DOI: 10.1186/Gb-2004-5-12-R96 |
0.531 |
|
| 2003 |
Zhong J, Zhang H, Stanyon CA, Tromp G, Finley RL. A strategy for constructing large protein interaction maps using the yeast two-hybrid system: regulated expression arrays and two-phase mating. Genome Research. 13: 2691-9. PMID 14613974 DOI: 10.1101/Gr.1134603 |
0.5 |
|
| 2003 |
Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, Hao YL, Ooi CE, Godwin B, Vitols E, Vijayadamodar G, Pochart P, Machineni H, Welsh M, Kong Y, ... ... Finley RL, et al. A protein interaction map of Drosophila melanogaster. Science (New York, N.Y.). 302: 1727-36. PMID 14605208 DOI: 10.1126/Science.1090289 |
0.448 |
|
| 2003 |
Ikonomov OC, Sbrissa D, Mlak K, Deeb R, Fligger J, Soans A, Finley RL, Shisheva A. Active PIKfyve associates with and promotes the membrane attachment of the late endosome-to-trans-Golgi network transport factor Rab9 effector p40. The Journal of Biological Chemistry. 278: 50863-71. PMID 14530284 DOI: 10.1074/Jbc.M307260200 |
0.314 |
|
| 2003 |
Stanyon CA, Limjindaporn T, Finley RL. Simultaneous cloning of open reading frames into several different expression vectors. Biotechniques. 35: 520-2, 524-6. PMID 14513557 DOI: 10.2144/03353St05 |
0.368 |
|
| 2002 |
Finley RL, Zhang H, Zhong J, Stanyon CA. Regulated expression of proteins in yeast using the MAL61-62 promoter and a mating scheme to increase dynamic range. Gene. 285: 49-57. PMID 12039031 DOI: 10.1016/S0378-1119(02)00420-1 |
0.362 |
|
| 2002 |
Liu J, Yao F, Wu R, Morgan M, Thorburn A, Finley RL, Chen YQ. Mediation of the DCC apoptotic signal by DIP13 alpha. The Journal of Biological Chemistry. 277: 26281-5. PMID 12011067 DOI: 10.1074/Jbc.M204679200 |
0.363 |
|
| 2002 |
Yu F, Finley RL, Raz A, Kim HR. Galectin-3 translocates to the perinuclear membranes and inhibits cytochrome c release from the mitochondria. A role for synexin in galectin-3 translocation. The Journal of Biological Chemistry. 277: 15819-27. PMID 11839755 DOI: 10.1074/Jbc.M200154200 |
0.363 |
|
| 2000 |
Stanyon CA, Finley RL. Progress and potential of Drosophila protein interaction maps Pharmacogenomics. 1: 417-431. PMID 11257926 DOI: 10.1517/14622416.1.4.417 |
0.527 |
|
| 2000 |
Kolonin MG, Zhong J, Finley RL. Interaction mating methods in two-hybrid systems Methods in Enzymology. 328: 26-46. PMID 11075336 DOI: 10.1016/S0076-6879(00)28388-2 |
0.54 |
|
| 2000 |
Kolonin MG, Finley RL. A role for cyclin J in the rapid nuclear division cycles of early Drosophila embryogenesis Developmental Biology. 227: 661-672. PMID 11071782 DOI: 10.1006/Dbio.2000.9916 |
0.325 |
|
| 2000 |
Mai J, Finley RL, Waisman DM, Sloane BF. Human procathepsin B interacts with the annexin II tetramer on the surface of tumor cells Journal of Biological Chemistry. 275: 12806-12812. PMID 10777578 DOI: 10.1074/Jbc.275.17.12806 |
0.353 |
|
| 2000 |
Tang K, Finley RL, Nie D, Honn KV. Identification of 12-lipoxygenase interaction with cellular proteins by yeast two-hybrid screening Biochemistry. 39: 3185-3191. PMID 10727209 DOI: 10.1021/Bi992664V |
0.494 |
|
| 1999 |
Tangz K, Finley RL, Nie D, Honn KV. Interaction of 12-lipoxygenase with cellular proteins Prostaglandins & Other Lipid Mediators. 59: 162. DOI: 10.1016/S0090-6980(99)90397-0 |
0.53 |
|
| 1999 |
Tang K, Finley RL, Nie D, Cai Y, Lamberti MP, Fridman R, Carey TE, Crissman JD, Honn KV. Physical interaction with B4 integrin regulates arachidonate 12-lipoxygenase activity Prostaglandins & Other Lipid Mediators. 59: 82. DOI: 10.1016/S0090-6980(99)90317-9 |
0.323 |
|
| 1998 |
Kolonin MG, Finley RL. Targeting cyclin-dependent kinases in Drosophila with peptide aptamers Proceedings of the National Academy of Sciences of the United States of America. 95: 14266-14271. PMID 9826689 DOI: 10.1073/Pnas.95.24.14266 |
0.339 |
|
| 1997 |
Brent R, Finley RL. Understanding gene and allele function with two-hybrid methods Annual Review of Genetics. 31: 663-704. PMID 9442911 DOI: 10.1146/Annurev.Genet.31.1.663 |
0.428 |
|
| 1996 |
Finley RL, Thomas BJ, Zipursky SL, Brent R. Isolation of Drosophila cyclin D, a protein expressed in the morphogenetic furrow before entry into S phase. Proceedings of the National Academy of Sciences of the United States of America. 93: 3011-5. PMID 8610160 DOI: 10.1073/Pnas.93.7.3011 |
0.377 |
|
| 1994 |
Paroush Z, Finley RL, Kidd T, Wainwright SM, Ingham PW, Brent R, Ish-Horowicz D. Groucho is required for Drosophila neurogenesis, segmentation, and sex determination and interacts directly with hairy-related bHLH proteins. Cell. 79: 805-15. PMID 8001118 DOI: 10.1016/0092-8674(94)90070-1 |
0.509 |
|
| 1994 |
Finley RL, Brent R. Interaction mating reveals binary and ternary connections between Drosophila cell cycle regulators Proceedings of the National Academy of Sciences of the United States of America. 91: 12980-12984. PMID 7809159 DOI: 10.1073/Pnas.91.26.12980 |
0.539 |
|
| 1989 |
Finley RL, West RW. Differential repression of GAL4 and adjacent transcription activators by operators in the yeast GAL upstream activating sequence. Molecular and Cellular Biology. 9: 4282-90. PMID 2685550 DOI: 10.1128/Mcb.9.10.4282 |
0.308 |
|
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