Daniel B. Stouffer, Ph.D. - Publications

Affiliations: 
2007 Chemical and Biological Engineering Northwestern University, Evanston, IL 
Area:
Chemical Engineering, Ecology Biology

81 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Bimler MD, Stouffer DB, Martyn TE, Mayfield MM. Plant interaction networks reveal the limits of our understanding of diversity maintenance. Ecology Letters. 27: e14376. PMID 38361464 DOI: 10.1111/ele.14376  0.433
2022 Martins LP, Stouffer DB, Blendinger PG, Böhning-Gaese K, Buitrón-Jurado G, Correia M, Costa JM, Dehling DM, Donatti CI, Emer C, Galetti M, Heleno R, Jordano P, Menezes Í, Morante-Filho JC, et al. Global and regional ecological boundaries explain abrupt spatial discontinuities in avian frugivory interactions. Nature Communications. 13: 6943. PMID 36376314 DOI: 10.1038/s41467-022-34355-w  0.349
2022 Dehling DM, Dalla Riva GV, Hutchinson MC, Stouffer DB. Niche Packing and Local Coexistence in a Megadiverse Guild of Frugivorous Birds Are Mediated by Fruit Dependence and Shifts in Interaction Frequencies. The American Naturalist. 199: 855-868. PMID 35580221 DOI: 10.1086/718684  0.364
2022 Chalmandrier L, Stouffer DB, Purcell AST, Lee WG, Tanentzap AJ, Laughlin DC. Predictions of biodiversity are improved by integrating trait-based competition with abiotic filtering. Ecology Letters. PMID 35152528 DOI: 10.1111/ele.13980  0.363
2021 Lai HR, Chong KY, Yee ATK, Mayfield MM, Stouffer DB. Non-additive biotic interactions improve predictions of tropical tree growth and impact community size structure. Ecology. e03588. PMID 34797924 DOI: 10.1002/ecy.3588  0.439
2021 Chalmandrier L, Hartig F, Laughlin DC, Lischke H, Pichler M, Stouffer DB, Pellissier L. Linking functional traits and demography to model species-rich communities. Nature Communications. 12: 2724. PMID 33976117 DOI: 10.1038/s41467-021-22630-1  0.42
2021 Cervantes-Loreto A, Ayers CA, Dobbs EK, Brosi BJ, Stouffer DB. The context dependency of pollinator interference: How environmental conditions and co-foraging species impact floral visitation. Ecology Letters. PMID 33942455 DOI: 10.1111/ele.13765  0.316
2021 Stouffer DB, Novak M. Hidden layers of density dependence in consumer feeding rates. Ecology Letters. PMID 33404158 DOI: 10.1111/ele.13670  0.324
2020 Bramon Mora B, Shin E, CaraDonna PJ, Stouffer DB. Untangling the seasonal dynamics of plant-pollinator communities. Nature Communications. 11: 4086. PMID 32796828 DOI: 10.1038/S41467-020-17894-Y  0.499
2020 Dehling DM, Peralta G, Bender IMA, Blendinger PG, Böhning-Gaese K, Muñoz MC, Neuschulz EL, Quitián M, Saavedra F, Santillán V, Schleuning M, Stouffer DB. Similar composition of functional roles in Andean seed-dispersal networks, despite high species and interaction turnover. Ecology. e03028. PMID 32112402 DOI: 10.1002/Ecy.3028  0.482
2020 Cirtwill AR, Dalla Riva GV, Baker NJ, Ohlsson M, Norström I, Wohlfarth IM, Thia JA, Stouffer DB. Related plants tend to share pollinators and herbivores, but strength of phylogenetic signal varies among plant families. The New Phytologist. PMID 31917859 DOI: 10.1111/Nph.16420  0.379
2020 Peralta G, Stouffer DB, Bringa EM, Vázquez DP. No such thing as a free lunch: interaction costs and the structure and stability of mutualistic networks Oikos. 129: 503-511. DOI: 10.1111/Oik.06503  0.469
2020 Llopis‐Belenguer C, Blasco‐Costa I, Balbuena JA, Sarabeev V, Stouffer DB. Native and invasive hosts play different roles in host–parasite networks Ecography. 43: 559-568. DOI: 10.1111/Ecog.04963  0.437
2019 Albouy C, Archambault P, Appeltans W, Araújo MB, Beauchesne D, Cazelles K, Cirtwill AR, Fortin MJ, Galiana N, Leroux SJ, Pellissier L, Poisot T, Stouffer DB, Wood SA, Gravel D. The marine fish food web is globally connected. Nature Ecology & Evolution. 3: 1153-1161. PMID 31358950 DOI: 10.1038/S41559-019-0950-Y  0.56
2019 Bramon Mora B, Dalla Riva GV, Stouffer DB. Unmasking structural patterns in incidence matrices: an application to ecological data. Journal of the Royal Society, Interface. 16: 20180747. PMID 30958192 DOI: 10.1098/Rsif.2018.0747  0.515
2019 Stouffer DB. All ecological models are wrong, but some are useful. The Journal of Animal Ecology. 88: 192-195. PMID 30773671 DOI: 10.1111/1365-2656.12949  0.448
2019 Letten AD, Stouffer DB. The mechanistic basis for higher-order interactions and non-additivity in competitive communities. Ecology Letters. PMID 30675983 DOI: 10.1111/Ele.13211  0.501
2019 Baiser B, Gravel D, Cirtwill AR, Dunne JA, Fahimipour AK, Gilarranz LJ, Grochow JA, Li D, Martinez ND, McGrew A, Poisot T, Romanuk TN, Stouffer DB, Trotta LB, Valdovinos FS, et al. Ecogeographical rules and the macroecology of food webs Global Ecology and Biogeography. 28: 1204-1218. DOI: 10.1111/Geb.12925  0.432
2019 Cagua EF, Wootton KL, Stouffer DB. Keystoneness, centrality, and the structural controllability of ecological networks Journal of Ecology. 107: 1779-1790. DOI: 10.1111/1365-2745.13147  0.541
2019 Delgado‐Baquerizo M, Doulcier G, Eldridge DJ, Stouffer DB, Maestre FT, Wang J, Powell JR, Jeffries TC, Singh BK. Increases in aridity lead to drastic shifts in the assembly of dryland complex microbial networks Land Degradation & Development. 31: 346-355. DOI: 10.1002/Ldr.3453  0.393
2018 Aldebert C, Stouffer DB. Community dynamics and sensitivity to model structure: towards a probabilistic view of process-based model predictions. Journal of the Royal Society, Interface. 15. PMID 30518566 DOI: 10.1098/Rsif.2018.0741  0.312
2018 Cirtwill AR, Stouffer DB, Romanuk TN. Correction to 'Latitudinal gradients in biotic niche breadth vary across ecosystem types'. Proceedings. Biological Sciences. 285. PMID 30257915 DOI: 10.1098/Rspb.2018.1795  0.412
2018 Mora BB, Gravel D, Gilarranz LJ, Poisot T, Stouffer DB. Identifying a common backbone of interactions underlying food webs from different ecosystems. Nature Communications. 9: 2603. PMID 29973596 DOI: 10.1038/S41467-018-05056-0  0.56
2018 Hutchinson MC, Gaiarsa MP, Stouffer DB. Contemporary Ecological Interactions Improve Models of Past Trait Evolution. Systematic Biology. PMID 29471501 DOI: 10.1093/Sysbio/Syy012  0.374
2018 Northfield TD, Laurance SGW, Mayfield MM, Paini DR, Snyder WE, Stouffer DB, Wright JT, Lach L. Native turncoats and indirect facilitation of species invasions. Proceedings. Biological Sciences. 285. PMID 29367390 DOI: 10.1098/Rspb.2017.1936  0.492
2018 Simmons BI, Cirtwill AR, Baker NJ, Wauchope HS, Dicks LV, Stouffer DB, Sutherland WJ. Motifs in bipartite ecological networks: uncovering indirect interactions Oikos. 128: 154-170. DOI: 10.1111/Oik.05670  0.523
2018 Cirtwill AR, Roslin T, Rasmussen C, Olesen JM, Stouffer DB. Between-year changes in community composition shape species’ roles in an Arctic plant-pollinator network Oikos. 127: 1163-1176. DOI: 10.1111/Oik.05074  0.444
2018 Gravel D, Baiser B, Dunne JA, Kopelke J, Martinez ND, Nyman T, Poisot T, Stouffer DB, Tylianakis JM, Wood SA, Roslin T. Bringing Elton and Grinnell together: a quantitative framework to represent the biogeography of ecological interaction networks Ecography. 42: 401-415. DOI: 10.1111/Ecog.04006  0.387
2018 Bimler MD, Stouffer DB, Lai HR, Mayfield MM. Accurate predictions of coexistence in natural systems require the inclusion of facilitative interactions and environmental dependency Journal of Ecology. 106: 1839-1852. DOI: 10.1111/1365-2745.13030  0.499
2018 Stouffer DB, Wainwright CE, Flanagan T, Mayfield MM. Cyclic population dynamics and density-dependent intransitivity as pathways to coexistence between co-occurring annual plants Journal of Ecology. 106: 838-851. DOI: 10.1111/1365-2745.12960  0.467
2018 Hutchinson MC, Bramon Mora B, Pilosof S, Barner AK, Kéfi S, Thébault E, Jordano P, Stouffer DB. Seeing the forest for the trees: Putting multilayer networks to work for community ecology Functional Ecology. 33: 206-217. DOI: 10.1111/1365-2435.13237  0.462
2017 Lustig A, Worner SP, Pitt JPW, Doscher C, Stouffer DB, Senay SD. A modeling framework for the establishment and spread of invasive species in heterogeneous environments. Ecology and Evolution. 7: 8338-8348. PMID 29075453 DOI: 10.1002/Ece3.2915  0.512
2017 Mayfield MM, Stouffer DB. Higher-order interactions capture unexplained complexity in diverse communities. Nature Ecology & Evolution. 1: 62. PMID 28812740 DOI: 10.1038/S41559-016-0062  0.497
2017 Hutchinson MC, Cagua EF, Stouffer DB. Cophylogenetic signal is detectable in pollination interactions across ecological scales. Ecology. PMID 28734071 DOI: 10.1002/Ecy.1955  0.436
2017 Cirtwill AR, Lagrue C, Poulin R, Stouffer DB. Host taxonomy constrains the properties of trophic transmission routes for parasites in lake food webs. Ecology. PMID 28609566 DOI: 10.1002/Ecy.1927  0.409
2017 Godoy O, Stouffer DB, Kraft NJ, Levine JM. Intransitivity is infrequent and fails to promote annual plant coexistence without pairwise niche differences. Ecology. PMID 28241383 DOI: 10.1002/Ecy.1782  0.496
2017 Donoso I, García D, Martínez D, Tylianakis JM, Stouffer DB. Complementary Effects of Species Abundances and Ecological Neighborhood on the Occurrence of Fruit-Frugivore Interactions Frontiers in Ecology and Evolution. 5. DOI: 10.3389/Fevo.2017.00133  0.504
2017 Poisot T, Stouffer DB. Interactions retain the co-phylogenetic matching that communities lost Oikos. 127: 230-238. DOI: 10.1111/Oik.03788  0.482
2017 Hutchinson MC, Cagua EF, Balbuena JA, Stouffer DB, Poisot T. paco: implementing Procrustean Approach to Cophylogeny in R Methods in Ecology and Evolution. 8: 932-940. DOI: 10.1111/2041-210X.12736  0.501
2017 Delmas E, Brose U, Gravel D, Stouffer DB, Poisot T. Simulations of biomass dynamics in community food webs Methods in Ecology and Evolution. 8: 881-886. DOI: 10.1111/2041-210X.12713  0.419
2017 Lustig A, Stouffer DB, Doscher C, Worner SP. Landscape metrics as a framework to measure the effect of landscape structure on the spread of invasive insect species Landscape Ecology. 32: 2311-2325. DOI: 10.1007/S10980-017-0570-3  0.435
2016 Cirtwill AR, Stouffer DB, Poulin R, Lagrue C. Are parasite richness and abundance linked to prey species richness and individual feeding preferences in fish hosts? Parasitology. 143: 75-86. PMID 26573385 DOI: 10.1017/S003118201500150X  0.335
2016 Dalla Riva GV, Stouffer DB. Exploring the evolutionary signature of food webs' backbones using functional traits Oikos. 125: 446-456. DOI: 10.1111/Oik.02305  0.495
2016 Poisot T, Stouffer DB, Kéfi S. Describe, understand and predict: why do we need networks in ecology? Functional Ecology. 30: 1878-1882. DOI: 10.1111/1365-2435.12799  0.347
2016 Wootton KL, Stouffer DB. Many weak interactions and few strong; food-web feasibility depends on the combination of the strength of species’ interactions and their correct arrangement Theoretical Ecology. 9: 185-195. DOI: 10.1007/S12080-015-0279-3  0.513
2016 Eklöf A, Stouffer DB. The phylogenetic component of food web structure and intervality Theoretical Ecology. 9: 107-115. DOI: 10.1007/S12080-015-0273-9  0.506
2016 Wootton KL, Stouffer DB. Species' traits and food‐web complexity interactively affect a food web's response to press disturbance Ecosphere. 7. DOI: 10.1002/Ecs2.1518  0.463
2015 Cirtwill AR, Stouffer DB, Romanuk TN. Latitudinal gradients in biotic niche breadth vary across ecosystem types. Proceedings. Biological Sciences / the Royal Society. 282. PMID 26559955 DOI: 10.1098/Rspb.2015.1589  0.557
2015 Cirtwill AR, Stouffer DB. Concomitant predation on parasites is highly variable but constrains the ways in which parasites contribute to food web structure. The Journal of Animal Ecology. 84: 734-44. PMID 25418425 DOI: 10.1111/1365-2656.12323  0.529
2015 Poisot T, Stouffer DB, Gravel D. Beyond species: Why ecological interaction networks vary through space and time Oikos. 124: 243-251. DOI: 10.1111/Oik.01719  0.542
2015 Cirtwill AR, Stouffer DB. Knowledge of predator-prey interactions improves predictions of immigration and extinction in island biogeography Global Ecology and Biogeography. DOI: 10.1111/Geb.12332  0.506
2015 Poisot T, Gravel D, Leroux S, Wood SA, Fortin MJ, Baiser B, Cirtwill AR, Araújo MB, Stouffer DB. Synthetic datasets and community tools for the rapid testing of ecological hypotheses Ecography. DOI: 10.1111/Ecog.01941  0.418
2015 Poisot T, Baiser B, Dunne JA, Kéfi S, Massol F, Mouquet N, Romanuk TN, Stouffer DB, Wood SA, Gravel D. mangal - making ecological network analysis simple Ecography. DOI: 10.1111/Ecog.00976  0.389
2015 Baker NJ, Kaartinen R, Roslin T, Stouffer DB. Species' roles in food webs show fidelity across a highly variable oak forest Ecography. 38: 130-139. DOI: 10.1111/Ecog.00913  0.525
2015 Thia JA, Hale ML, Stouffer DB, Chapman HM. Limited dispersal into appropriate microhabitats likely explains recruitment failure in a chimpanzee-dependent tree species African Journal of Ecology. DOI: 10.1111/Aje.12257  0.352
2015 Poisot T, Cirtwill AR, Cazelles K, Gravel D, Fortin MJ, Stouffer DB. The structure of probabilistic networks Methods in Ecology and Evolution. DOI: 10.1111/2041-210X.12468  0.436
2015 Lustig A, Stouffer DB, Roigé M, Worner SP. Towards more predictable and consistent landscape metrics across spatial scales Ecological Indicators. 57: 11-21. DOI: 10.1016/J.Ecolind.2015.03.042  0.32
2014 Stouffer DB, Cirtwill AR, Bascompte J, Bartomeus I. How exotic plants integrate into pollination networks. The Journal of Ecology. 102: 1442-1450. PMID 25558089 DOI: 10.1111/1365-2745.12310  0.472
2014 García D, Martínez D, Stouffer DB, Tylianakis JM. Exotic birds increase generalization and compensate for native bird decline in plant-frugivore assemblages. The Journal of Animal Ecology. 83: 1441-50. PMID 24749667 DOI: 10.1111/1365-2656.12237  0.495
2014 Lavabre JE, Stouffer DB, Sanz R, Bascompte J. Seed dispersal in heterogeneous landscapes: Linking field observations with spatially explicit models Oikos. 123: 1355-1364. DOI: 10.1111/Oik.01155  0.358
2014 Stouffer DB. Quantifying the complexity of complex ecological networks Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8738.  0.325
2013 Saavedra S, Stouffer DB. "Disentangling nestedness" disentangled. Nature. 500: E1-2. PMID 23969464 DOI: 10.1038/Nature12380  0.462
2013 Dunne JA, Lafferty KD, Dobson AP, Hechinger RF, Kuris AM, Martinez ND, McLaughlin JP, Mouritsen KN, Poulin R, Reise K, Stouffer DB, Thieltges DW, Williams RJ, Zander CD. Parasites affect food web structure primarily through increased diversity and complexity. Plos Biology. 11: e1001579. PMID 23776404 DOI: 10.1371/Journal.Pbio.1001579  0.462
2013 Tomimatsu H, Sasaki T, Kurokawa H, Bridle JR, Fontaine C, Kitano J, Stouffer DB, Vellend M, Bezemer TM, Fukami T, Hadly EA, van der Heijden MGA, Kawata M, Kéfi S, Kraft NJB, et al. FORUM: Sustaining ecosystem functions in a changing world: A call for an integrated approach Journal of Applied Ecology. 50: 1124-1130. DOI: 10.1111/1365-2664.12116  0.359
2012 Thompson RM, Brose U, Dunne JA, Hall RO, Hladyz S, Kitching RL, Martinez ND, Rantala H, Romanuk TN, Stouffer DB, Tylianakis JM. Food webs: reconciling the structure and function of biodiversity. Trends in Ecology & Evolution. 27: 689-97. PMID 22959162 DOI: 10.1016/J.Tree.2012.08.005  0.511
2012 Poole AM, Stouffer DB, Tylianakis JM. 'Ecosystomics': ecology by sequencer. Trends in Ecology & Evolution. 27: 309-10. PMID 22537669 DOI: 10.1016/J.Tree.2012.03.008  0.44
2012 Stouffer DB, Sales-Pardo M, Sirer MI, Bascompte J. Evolutionary conservation of species' roles in food webs. Science (New York, N.Y.). 335: 1489-92. PMID 22442483 DOI: 10.1126/Science.1216556  0.699
2011 Saavedra S, Stouffer DB, Uzzi B, Bascompte J. Strong contributors to network persistence are the most vulnerable to extinction. Nature. 478: 233-5. PMID 21918515 DOI: 10.1038/Nature10433  0.364
2011 Stouffer DB, Rezende EL, Amaral LA. The role of body mass in diet contiguity and food-web structure. The Journal of Animal Ecology. 80: 632-9. PMID 21401590 DOI: 10.1111/J.1365-2656.2011.01812.X  0.511
2011 Stouffer DB, Bascompte J. Compartmentalization increases food-web persistence. Proceedings of the National Academy of Sciences of the United States of America. 108: 3648-52. PMID 21307311 DOI: 10.1073/Pnas.1014353108  0.524
2010 Guimerà R, Stouffer DB, Sales-Pardo M, Leicht EA, Newman ME, Amaral LA. Origin of compartmentalization in food webs. Ecology. 91: 2941-51. PMID 21058554 DOI: 10.1890/09-1175.1  0.535
2010 Fortuna MA, Stouffer DB, Olesen JM, Jordano P, Mouillot D, Krasnov BR, Poulin R, Bascompte J. Nestedness versus modularity in ecological networks: two sides of the same coin? The Journal of Animal Ecology. 79: 811-7. PMID 20374411 DOI: 10.1111/J.1365-2656.2010.01688.X  0.443
2010 Stouffer DB, Bascompte J. Understanding food-web persistence from local to global scales. Ecology Letters. 13: 154-61. PMID 19968697 DOI: 10.1111/J.1461-0248.2009.01407.X  0.406
2010 Stouffer DB. Scaling from individuals to networks in food webs Functional Ecology. 24: 44-51. DOI: 10.1111/J.1365-2435.2009.01644.X  0.468
2009 Malmgren RD, Stouffer DB, Campanharo AS, Amaral LA. On universality in human correspondence activity. Science (New York, N.Y.). 325: 1696-700. PMID 19779200 DOI: 10.1126/Science.1174562  0.623
2009 Bascompte J, Stouffer DB. The assembly and disassembly of ecological networks. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 364: 1781-7. PMID 19451127 DOI: 10.1098/Rstb.2008.0226  0.426
2008 Malmgren RD, Stouffer DB, Motter AE, Amaral LA. A Poissonian explanation for heavy tails in e-mail communication. Proceedings of the National Academy of Sciences of the United States of America. 105: 18153-8. PMID 19017788 DOI: 10.1073/Pnas.0800332105  0.618
2007 Stouffer DB, Camacho J, Jiang W, Amaral LA. Evidence for the existence of a robust pattern of prey selection in food webs. Proceedings. Biological Sciences / the Royal Society. 274: 1931-40. PMID 17567558 DOI: 10.1098/Rspb.2007.0571  0.515
2007 Camacho J, Stouffer DB, Amaral LA. Quantitative analysis of the local structure of food webs. Journal of Theoretical Biology. 246: 260-8. PMID 17292921 DOI: 10.1016/J.Jtbi.2006.12.036  0.449
2006 Stouffer DB, Camacho J, Amaral LA. A robust measure of food web intervality. Proceedings of the National Academy of Sciences of the United States of America. 103: 19015-20. PMID 17146055 DOI: 10.1073/Pnas.0603844103  0.453
2005 Stouffer DB, Camacho J, Guimerà R, Ng CA, Nunes Amaral LA. Quantitative patterns in the structure of model and empirical food webs Ecology. 86: 1301-1311. DOI: 10.1890/04-0957  0.703
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