Howard A. Nash - Related publications

National Institute of Mental Health, Bethesda, MD, United States 
Behavioral Genetics
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Jeanne Dit Fouque K, Garabedian A, Leng F, Tse-Dinh YC, Fernandez-Lima F. Microheterogeneity of Topoisomerase IA/IB and Their DNA-Bound States. Acs Omega. 4: 3619-3626. PMID 30842985 DOI: 10.1021/acsomega.8b02887   
2019 Del Prado A, Rodríguez I, Lázaro JM, Moreno-Morcillo M, de Vega M, Salas M. New insights into the coordination between the polymerization and 3'-5' exonuclease activities in ϕ29 DNA polymerase. Scientific Reports. 9: 923. PMID 30696917 DOI: 10.1038/s41598-018-37513-7   
2019 Tse ECM, Zwang TJ, Bedoya S, Barton JK. Effective Distance for DNA-Mediated Charge Transport between Repair Proteins. Acs Central Science. 5: 65-72. PMID 30693326 DOI: 10.1021/acscentsci.8b00566   
2019 Meyer D, Fu BXH, Chavez M, Loeillet S, Cerqueira PG, Nicolas A, Heyer WD. Cooperation between non-essential DNA polymerases contributes to genome stability in Saccharomyces cerevisiae. Dna Repair. 76: 40-49. PMID 30818168 DOI: 10.1016/j.dnarep.2019.02.004   
2019 Moquin DM, Genois MM, Zhang JM, Ouyang J, Yadav T, Buisson R, Yazinski SA, Tan J, Boukhali M, Gagné JP, Poirier GG, Lan L, Haas W, Zou L. Localized protein biotinylation at DNA damage sites identifies ZPET, a repressor of homologous recombination. Genes & Development. 33: 75-89. PMID 30567999 DOI: 10.1101/gad.315978.118   
2019 Friedrich SM, Bang R, Li A, Wang TH. Versatile Analysis of DNA-Biomolecule Interactions in Solution by Hydrodynamic Separation and Single Molecule Detection. Analytical Chemistry. PMID 30668901 DOI: 10.1021/acs.analchem.8b04733   
2019 Jung Y, Lee CY, Park KS, Park HG. Sensitive and specific detection of proteins based on target-responsive DNA polymerase activity. Analytica Chimica Acta. 1059: 80-85. PMID 30876635 DOI: 10.1016/j.aca.2019.01.025   
2019 Datta C, Jha RK, Ganguly S, Nagaraja V. NapA (Rv0430), a novel nucleoid-associated protein that regulates a virulence operon in Mycobacterium tuberculosis in a supercoiling-dependent manner. Journal of Molecular Biology. PMID 30872139 DOI: 10.1016/j.jmb.2019.02.029   
2019 Marin-Gonzalez A, Vilhena JG, Moreno-Herrero F, Perez R. DNA Crookedness Regulates DNA Mechanical Properties at Short Length Scales. Physical Review Letters. 122: 048102. PMID 30768347 DOI: 10.1103/PhysRevLett.122.048102   
2019 Hermanová M, Orság P, Balintová J, Hocek M, Fojta M. Dual redox labeling of DNA as a tool for electrochemical detection of p53 protein-DNA interactions. Analytica Chimica Acta. 1050: 123-131. PMID 30661579 DOI: 10.1016/j.aca.2018.10.053   
2019 Alfano L, Caporaso A, Altieri A, Dell'Aquila M, Landi C, Bini L, Pentimalli F, Giordano A. Depletion of the RNA binding protein HNRNPD impairs homologous recombination by inhibiting DNA-end resection and inducing R-loop accumulation. Nucleic Acids Research. PMID 30799487 DOI: 10.1093/nar/gkz076   
2019 Qi R, Otting G. Mutant T4 DNA polymerase for easy cloning and mutagenesis. Plos One. 14: e0211065. PMID 30673756 DOI: 10.1371/journal.pone.0211065   
2019 Zhang Y, Cui Y, An R, Liang X, Li Q, Wang H, Wang H, Fan Y, Dong P, Li J, Cheng K, Wang W, Wang S, Wang G, Xue C, et al. Topologically constrained formation of stable Z-DNA from normal sequence under physiological conditions. Journal of the American Chemical Society. PMID 30844265 DOI: 10.1021/jacs.8b13855   
2019 Greschner AA, Ropagnol X, Kort M, Zuberi N, Perreault J, Razzari L, Ozaki T, Gauthier MA. Room temperature and selective triggering of supramolecular DNA assembly/disassembly by non-ionizing radiation. Journal of the American Chemical Society. PMID 30707028 DOI: 10.1021/jacs.8b10355   
2019 Wiegand T, Cadalbert R, Lacabanne D, Timmins J, Terradot L, Böckmann A, Meier BH. The conformational changes coupling ATP hydrolysis and translocation in a bacterial DnaB helicase. Nature Communications. 10: 31. PMID 30604765 DOI: 10.1038/s41467-018-07968-3   
2019 Adhikari H, Ghosh R, Mukherjea KK. An oxidodiperoxido vanadium based artificial nuclease: DNA binding and cleavage studies. Journal of Biomolecular Structure & Dynamics. 1-9. PMID 30806581 DOI: 10.1080/07391102.2019.1587514   
2019 Dehghani-Tafti S, Levdikov V, Antson AA, Bax B, Sanders CM. Structural and functional analysis of the nucleotide and DNA binding activities of the human PIF1 helicase. Nucleic Acids Research. PMID 30698796 DOI: 10.1093/nar/gkz028   
2019 Xu Y, Jiang S, Simmons CR, Narayanan RP, Zhang F, Aziz AM, Yan H, Stephanopoulos N. Tunable Nanoscale Cages from Self-Assembling DNA and Protein Building Blocks. Acs Nano. PMID 30835439 DOI: 10.1021/acsnano.8b09798   
2019 Green MR, Sambrook J. Inverse Polymerase Chain Reaction (PCR). Cold Spring Harbor Protocols. 2019: pdb.prot095166. PMID 30710023 DOI: 10.1101/pdb.prot095166   
2019 Nakata E, Dinh H, Nguyen TM, Morii T. DNA binding adaptors to assemble proteins of interest on DNA scaffold. Methods in Enzymology. 617: 287-322. PMID 30784406 DOI: 10.1016/bs.mie.2018.12.014   
2019 Ito K, Argunhan B, Tsubouchi H, Iwasaki H. Real-time Observation of the DNA Strand Exchange Reaction Mediated by Rad51. Journal of Visualized Experiments : Jove. PMID 30829327 DOI: 10.3791/59073   
2019 Sarangi MK, Zvoda V, Holte MN, Becker NA, Peters JP, Maher LJ, Ansari A. Evidence for a bind-then-bend mechanism for architectural DNA binding protein yNhp6A. Nucleic Acids Research. PMID 30698746 DOI: 10.1093/nar/gkz022   
2019 Lau BT, Ji HP. Covalent 'click chemistry'-based attachment of DNA onto solid phase enables iterative molecular analysis. Analytical Chemistry. PMID 30652472 DOI: 10.1021/acs.analchem.8b05139   
2019 Park VS, Pursell ZF. POLE proofreading defects: Contributions to mutagenesis and cancer. Dna Repair. 76: 50-59. PMID 30818169 DOI: 10.1016/j.dnarep.2019.02.007   
2019 Kusakabe M, Onishi Y, Tada H, Kurihara F, Kusao K, Furukawa M, Iwai S, Yokoi M, Sakai W, Sugasawa K. Mechanism and regulation of DNA damage recognition in nucleotide excision repair. Genes and Environment : the Official Journal of the Japanese Environmental Mutagen Society. 41: 2. PMID 30700997 DOI: 10.1186/s41021-019-0119-6   
2019 Lerner LK, Sale JE. Replication of G Quadruplex DNA. Genes. 10. PMID 30700033 DOI: 10.3390/genes10020095   
2019 Kladova OA, Grin IR, Fedorova OS, Kuznetsov NA, Zharkov DO. Conformational Dynamics of damage Processing by Human DNA Glycosylase NEIL1. Journal of Molecular Biology. PMID 30716333 DOI: 10.1016/j.jmb.2019.01.030   
2019 Raia P, Delarue M, Sauguet L. An updated structural classification of replicative DNA polymerases. Biochemical Society Transactions. PMID 30647142 DOI: 10.1042/BST20180579   
2019 Umek T, Sollander K, Bergquist H, Wengel J, Lundin KE, Smith CIE, Zain R. Oligonucleotide Binding to Non-B-DNA in . Molecules (Basel, Switzerland). 24. PMID 30871121 DOI: 10.3390/molecules24051000   
2019 Wang Z, D'Annessa I, Tesauro C, Ottaviani A, Soren BC, Dasari JB, Messina B, Thareparambil A, Fiorani P. The human DNA topoisomerase I mutant Gly717Asp: Higher religation rate is not always associated with camptothecin resistance. Archives of Biochemistry and Biophysics. PMID 30653963 DOI: 10.1016/   
2019 Nebenzahl-Sharon K, Shalata H, Sharf R, Amer J, Khoury-Haddad H, Sohn SY, Ayoub N, Hearing P, Kleinberger T. Biphasic functional interaction between the adenovirus E4orf4 protein and DNA-PK. Journal of Virology. PMID 30842317 DOI: 10.1128/JVI.01365-18   
2019 Mok MCY, Campalans A, Pillon MC, Guarné A, Radicella JP, Junop MS. Identification of an XRCC1 DNA binding activity essential for retention at sites of DNA damage. Scientific Reports. 9: 3095. PMID 30816207 DOI: 10.1038/s41598-019-39543-1   
2019 Kwon HJ, Jeong JS, Bae YK, Choi K, Yang I. Stable isotope-labeled DNA: A new strategy for the quantification of total DNA using LC-MS. Analytical Chemistry. PMID 30773003 DOI: 10.1021/acs.analchem.8b04940   
2019 Nguyen HP, Stewart S, Kukwikila MN, Jones SF, Offenbartl-Stiegert D, Mao S, Balasubramanian S, Beck S, Howorka S. Opto-epigenetic modulation of DNA methylation with a photo-responsive small-molecule approach. Angewandte Chemie (International Ed. in English). PMID 30773767 DOI: 10.1002/anie.201901139   
2019 Crossley MP, Bocek M, Cimprich KA. R-Loops as Cellular Regulators and Genomic Threats. Molecular Cell. 73: 398-411. PMID 30735654 DOI: 10.1016/j.molcel.2019.01.024   
2019 Sun T, Wang K, Liu C, Wang Y, Wang J, Li P. Identification of Extrachromosomal Linear microDNAs Interacted with microRNAs in the Cell Nuclei. Cells. 8. PMID 30717295 DOI: 10.3390/cells8020111   
2019 Li Y, Liu W, Zhu Y, Diao L. A fluorescence method for homogeneous detection of influenza A (H1N1) DNA sequence based on Guanine(G)-quadruplex- N-methylmesoporphyrin IX (NMM) complex and Assistance-DNA (A-DNA) inhibition. Journal of Medical Virology. PMID 30715734 DOI: 10.1002/jmv.25422   
2019 Hainer SJ, Fazzio TG. High-Resolution Chromatin Profiling Using CUT&RUN. Current Protocols in Molecular Biology. e85. PMID 30688406 DOI: 10.1002/cpmb.85   
2019 Gansauge MT, Meyer M. A Method for Single-Stranded Ancient DNA Library Preparation. Methods in Molecular Biology (Clifton, N.J.). 1963: 75-83. PMID 30875046 DOI: 10.1007/978-1-4939-9176-1_9   
2019 Piepenbrink KH. DNA Uptake by Type IV Filaments. Frontiers in Molecular Biosciences. 6: 1. PMID 30805346 DOI: 10.3389/fmolb.2019.00001   
2019 Jupe F, Rivkin AC, Michael TP, Zander M, Motley ST, Sandoval JP, Slotkin RK, Chen H, Castanon R, Nery JR, Ecker JR. The complex architecture and epigenomic impact of plant T-DNA insertions. Plos Genetics. 15: e1007819. PMID 30657772 DOI: 10.1371/journal.pgen.1007819   
2019 Rogers JM, Waters CT, Seegar TCM, Jarrett SM, Hallworth AN, Blacklow SC, Bulyk ML. Bispecific Forkhead Transcription Factor FoxN3 Recognizes Two Distinct Motifs with Different DNA Shapes. Molecular Cell. PMID 30826165 DOI: 10.1016/j.molcel.2019.01.019   
2019 Franklin D. P152R Mutation Within MeCP2 Can Cause Loss of DNA-Binding Selectivity. Interdisciplinary Sciences, Computational Life Sciences. PMID 30673959 DOI: 10.1007/s12539-019-00316-z   
2019 Öz R, Kk S, Westerlund F. A nanofluidic device for real-time visualization of DNA-protein interactions on the single DNA molecule level. Nanoscale. PMID 30644945 DOI: 10.1039/c8nr09023h   
2019 Choi D, Kim H, Kim D, Heo J, Lee H, Lee JB, Hong J. Self-assembled DNA hollow spheres from microsponges. Biofabrication. PMID 30808012 DOI: 10.1088/1758-5090/ab0abb   
2019 Simmel FC, Yurke B, Singh HR. Principles and Applications of Nucleic Acid Strand Displacement Reactions. Chemical Reviews. PMID 30714375 DOI: 10.1021/acs.chemrev.8b00580   
2019 Li L, Zhang P, Li J, Wang Y, Wei Y, Hu J, Zhou X, Xu B, Li B. Measurement of nanomechanical properties of DNA molecules by PeakForce atomic force microscopy based on DNA origami. Nanoscale. PMID 30834915 DOI: 10.1039/c8nr10354b   
2019 Wang L, Wang H, Liu H, Zhao Q, Liu B, Wang L, Zhang J, Zhu J, Bao R, Luo Y. Improved CRISPR-Cas12a-assisted One-Pot DNA Editing (iCOPE) method enables seamless DNA editing. Biotechnology and Bioengineering. PMID 30730047 DOI: 10.1002/bit.26938   
2019 Craig JM, Laszlo AH, Nova IC, Brinkerhoff H, Noakes MT, Baker KS, Bowman JL, Higinbotham HR, Mount JW, Gundlach JH. Determining the effects of DNA sequence on Hel308 helicase translocation along single-stranded DNA using nanopore tweezers. Nucleic Acids Research. PMID 30649515 DOI: 10.1093/nar/gkz004   
2019 Geiger-Schuller K, Mitra J, Ha T, Barrick D. Functional instability allows access to DNA in longer Transcription Activator-Like Effector (TALE) arrays. Elife. 8. PMID 30810525 DOI: 10.7554/eLife.38298