Subhasis Ray - Related publications

2006-2014 National Center for Biological Sciences, Bengaluru, Karnataka, India 
 2014- National Institute of Child Health and Human Development, Bethesda, MD, United States 
computational neuroscience, insect sensory systems
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Haiman ZB, Zielinski DC, Koike Y, Yurkovich JT, Palsson BO. MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics. Plos Computational Biology. 17: e1008208. PMID 33507922 DOI: 10.1371/journal.pcbi.1008208   
2021 Sáray S, Rössert CA, Appukuttan S, Migliore R, Vitale P, Lupascu CA, Bologna LL, Van Geit W, Romani A, Davison AP, Muller E, Freund TF, Káli S. HippoUnit: A software tool for the automated testing and systematic comparison of detailed models of hippocampal neurons based on electrophysiological data. Plos Computational Biology. 17: e1008114. PMID 33513130 DOI: 10.1371/journal.pcbi.1008114   
2021 Jiang R, Jacob B, Geiger M, Matthew S, Rumsey B, Singh P, Wrede F, Yi TM, Drawert B, Hellander A, Petzold L. Epidemiological modeling in StochSS Live! Bioinformatics (Oxford, England). PMID 33512399 DOI: 10.1093/bioinformatics/btab061   
2021 van Rosmalen RP, Smith RW, Martins Dos Santos VAP, Fleck C, Suarez-Diez M. Model reduction of genome-scale metabolic models as a basis for targeted kinetic models. Metabolic Engineering. PMID 33486094 DOI: 10.1016/j.ymben.2021.01.008   
2021 Su WH, Chou CS, Xiu D. Deep Learning of Biological Models from Data: Applications to ODE Models. Bulletin of Mathematical Biology. 83: 19. PMID 33452931 DOI: 10.1007/s11538-020-00851-7   
2021 Abdulwasaa MA, Abdo MS, Shah K, Nofal TA, Panchal SK, Kawale SV, Abdel-Aty AH. Fractal-fractional mathematical modeling and forecasting of new cases and deaths of COVID-19 epidemic outbreaks in India. Results in Physics. 20: 103702. PMID 33520622 DOI: 10.1016/j.rinp.2020.103702   
2021 Nam SM, Kim HJ. WSN-SES/MB: System Entity Structure and Model Base Framework for Large-Scale Wireless Sensor Networks. Sensors (Basel, Switzerland). 21. PMID 33435476 DOI: 10.3390/s21020430   
2021 Erandi K, Perera S, Mahasinghe AC. Analysis and forecast of dengue incidence in urban Colombo, Sri Lanka. Theoretical Biology & Medical Modelling. 18: 3. PMID 33413478 DOI: 10.1186/s12976-020-00134-7   
2021 Hu X, Liu Z, Yu X, Zhao Y, Chen W, Hu B, Du X, Li X, Helaoui M, Wang W, Ghannouchi FM. Convolutional Neural Network for Behavioral Modeling and Predistortion of Wideband Power Amplifiers. Ieee Transactions On Neural Networks and Learning Systems. PMID 33566774 DOI: 10.1109/TNNLS.2021.3054867   
2021 Ramos AM, Ferrández MR, Vela-Pérez M, Kubik AB, Ivorra B. A simple but complex enough -SIR type model to be used with COVID-19 real data. Application to the case of Italy. Physica D. Nonlinear Phenomena. 132839. PMID 33424064 DOI: 10.1016/j.physd.2020.132839   
2021 Amidi Y, Nazari B, Sadri S, Yousefi A. Parameter Estimation in Multiple Dynamic Synaptic Coupling Model Using Bayesian Point Process State-Space Modeling Framework. Neural Computation. 1-31. PMID 33617745 DOI: 10.1162/neco_a_01375   
2021 Schmiester L, Schälte Y, Bergmann FT, Camba T, Dudkin E, Egert J, Fröhlich F, Fuhrmann L, Hauber AL, Kemmer S, Lakrisenko P, Loos C, Merkt S, Müller W, Pathirana D, et al. PEtab-Interoperable specification of parameter estimation problems in systems biology. Plos Computational Biology. 17: e1008646. PMID 33497393 DOI: 10.1371/journal.pcbi.1008646   
2021 Schmiester L, Schälte Y, Bergmann FT, Camba T, Dudkin E, Egert J, Fröhlich F, Fuhrmann L, Hauber AL, Kemmer S, Lakrisenko P, Loos C, Merkt S, Müller W, Pathirana D, et al. PEtab-Interoperable specification of parameter estimation problems in systems biology. Plos Computational Biology. 17: e1008646. PMID 33497393 DOI: 10.1371/journal.pcbi.1008646   
2021 Khan MA, Ullah S, Kumar S. A robust study on 2019-nCOV outbreaks through non-singular derivative. European Physical Journal Plus. 136: 168. PMID 33552828 DOI: 10.1140/epjp/s13360-021-01159-8   
2021 Zhou H, Zhang F, Du Z, Liu R. Forecasting PM using hybrid graph convolution-based model considering dynamic wind-field to offer the benefit of spatial interpretability. Environmental Pollution (Barking, Essex : 1987). 273: 116473. PMID 33503566 DOI: 10.1016/j.envpol.2021.116473   
2021 Luo X, Duan H, Xu K. A novel grey model based on traditional Richards model and its application in COVID-19. Chaos, Solitons, and Fractals. 142: 110480. PMID 33519114 DOI: 10.1016/j.chaos.2020.110480   
2021 Luo X, Duan H, Xu K. A novel grey model based on traditional Richards model and its application in COVID-19. Chaos, Solitons, and Fractals. 142: 110480. PMID 33519114 DOI: 10.1016/j.chaos.2020.110480   
2021 Schmidt M, Schroeder I, Bauer D, Thiel G, Hamacher K. Inferring functional units in ion channel pores via relative entropy. European Biophysics Journal : Ebj. 50: 37-57. PMID 33523249 DOI: 10.1007/s00249-020-01480-7   
2021 Pan Z, Lu W, Fan Y, Li J. Identification of groundwater contamination sources and hydraulic parameters based on bayesian regularization deep neural network. Environmental Science and Pollution Research International. PMID 33398760 DOI: 10.1007/s11356-020-11614-1   
2021 Gajewicz-Skretna A, Gromelski M, Wyrzykowska E, Furuhama A, Yamamoto H, Suzuki N. Aquatic toxicity (Pre)screening strategy for structurally diverse chemicals: global or local classification tree models? Ecotoxicology and Environmental Safety. 208: 111738. PMID 33396066 DOI: 10.1016/j.ecoenv.2020.111738   
2021 Stutz TC, Landeros A, Xu J, Sinsheimer JS, Sehl M, Lange K. Stochastic simulation algorithms for Interacting Particle Systems. Plos One. 16: e0247046. PMID 33651796 DOI: 10.1371/journal.pone.0247046   
2021 Liang D, Song M, Niu Z, Zhang P, Rafailovich M, Deng Y. Supervised machine learning approach to molecular dynamics forecast of SARS-CoV-2 spike glycoproteins at varying temperatures. Mrs Advances. 1-6. PMID 33619443 DOI: 10.1557/s43580-021-00021-4   
2021 Wu L, Huang R, Tetko IV, Xia Z, Xu J, Tong W. Trade-off Predictivity and Explainability for Machine-Learning Powered Predictive Toxicology: An in-Depth Investigation with Tox21 Data Sets. Chemical Research in Toxicology. PMID 33513003 DOI: 10.1021/acs.chemrestox.0c00373   
2021 Qi Y, Jin L, Luo X, Zhou M. Recurrent Neural Dynamics Models for Perturbed Nonstationary Quadratic Programs: A Control-Theoretical Perspective. Ieee Transactions On Neural Networks and Learning Systems. PMID 33449881 DOI: 10.1109/TNNLS.2020.3041364   
2021 Jin X, Zhou D, Jiang Q, Chu X, Yao S, Li K, Zhou W. How to Analyze the Neurodynamic Characteristics of Pulse-Coupled Neural Networks? A Theoretical Analysis and Case Study of Intersecting Cortical Model. Ieee Transactions On Cybernetics. PMID 33449895 DOI: 10.1109/TCYB.2020.3043233   
2021 Huang C, Li M, Wang D. Stochastic configuration network ensembles with selective base models. Neural Networks : the Official Journal of the International Neural Network Society. 137: 106-118. PMID 33581381 DOI: 10.1016/j.neunet.2021.01.011   
2021 Tyagi S, Martha SC, Abbas S, Debbouche A. Mathematical modeling and analysis for controlling the spread of infectious diseases. Chaos, Solitons, and Fractals. 144: 110707. PMID 33558795 DOI: 10.1016/j.chaos.2021.110707   
2021 Chaves M, de Jong H. Qualitative Modeling, Analysis and Control of Synthetic Regulatory Circuits. Methods in Molecular Biology (Clifton, N.J.). 2229: 1-40. PMID 33405215 DOI: 10.1007/978-1-0716-1032-9_1   
2021 Domenzain I, Li F, Kerkhoven EJ, Siewers V. Evaluating accessibility, usability and interoperability of genome-scale metabolic models for diverse yeasts species. Fems Yeast Research. PMID 33428734 DOI: 10.1093/femsyr/foab002   
2021 Larson K, Arampatzis G, Bowman C, Chen Z, Hadjidoukas P, Papadimitriou C, Koumoutsakos P, Matzavinos A. Data-driven prediction and origin identification of epidemics in population networks. Royal Society Open Science. 8: 200531. PMID 33614060 DOI: 10.1098/rsos.200531   
2021 Rooks NB, Schneider MTY, Erdemir A, Halloran JP, Laz PJ, Shelburne KB, Hume D, Imhauser C, Zaylor W, Elmasry S, Schwartz A, Chokhandre S, Abdollahi Nohouji N, Besier TF. Deciphering the "Art" in Modeling and Simulation of the Knee Joint: Variations in Model Development. Journal of Biomechanical Engineering. PMID 33537727 DOI: 10.1115/1.4050028   
2021 Besenczi R, Bátfai N, Jeszenszky P, Major R, Monori F, Ispány M. Large-scale simulation of traffic flow using Markov model. Plos One. 16: e0246062. PMID 33561138 DOI: 10.1371/journal.pone.0246062   
2021 Li D, Huang D, Liu Y. A novel two-step adaptive multioutput semisupervised soft sensor with applications in wastewater treatment. Environmental Science and Pollution Research International. PMID 33550556 DOI: 10.1007/s11356-021-12656-9   
2021 Shan X, Song H, Cao H, Zhang L, Zhao X, Fan J. A Dynamic Hysteresis Model and Nonlinear Control System for a Structure-Integrated Piezoelectric Sensor-Actuator. Sensors (Basel, Switzerland). 21. PMID 33401582 DOI: 10.3390/s21010269   
2021 Gajewicz-Skretna A, Kar S, Piotrowska M, Leszczynski J. The kernel-weighted local polynomial regression (KwLPR) approach: an efficient, novel tool for development of QSAR/QSAAR toxicity extrapolation models. Journal of Cheminformatics. 13: 9. PMID 33579384 DOI: 10.1186/s13321-021-00484-5   
2021 Zhang Q, Zhang W, Li T, Sun Y. Accuracy and uncertainty analysis of staple food crop modelling by the process-based Agro-C model. International Journal of Biometeorology. PMID 33420537 DOI: 10.1007/s00484-020-02053-1   
2021 Khan A, Zarin R, Hussain G, Ahmad NA, Mohd MH, Yusuf A. Stability analysis and optimal control of covid-19 with convex incidence rate in Khyber Pakhtunkhawa (Pakistan). Results in Physics. 20: 103703. PMID 33520623 DOI: 10.1016/j.rinp.2020.103703   
2021 Aba Oud MA, Ali A, Alrabaiah H, Ullah S, Khan MA, Islam S. A fractional order mathematical model for COVID-19 dynamics with quarantine, isolation, and environmental viral load. Advances in Difference Equations. 2021: 106. PMID 33613668 DOI: 10.1186/s13662-021-03265-4   
2021 Murray EJ, Marshall BDL, Buchanan AL. Emulating Target Trials to Improve Causal Inference from Agent-Based Models. American Journal of Epidemiology. PMID 33595053 DOI: 10.1093/aje/kwab040   
2021 Ameen IG, Ali HM, Alharthi MR, Abdel-Aty AH, Elshehabey HM. Investigation of the dynamics of COVID-19 with a fractional mathematical model: a comparative study with actual data. Results in Physics. 103976. PMID 33623732 DOI: 10.1016/j.rinp.2021.103976   
2021 Van Pottelbergh T, Drion G, Sepulchre R. From Biophysical to Integrate-and-Fire Modeling. Neural Computation. 1-27. PMID 33400899 DOI: 10.1162/neco_a_01353   
2021 Sarmiento CA, Hernandez AM, Serna Higuita LY, Mañanas MÁ. An integrated mathematical model of the cardiovascular and respiratory response to exercise: Model-building and comparison with reported models. American Journal of Physiology. Heart and Circulatory Physiology. PMID 33416450 DOI: 10.1152/ajpheart.00074.2020   
2021 Jiang D, Wu Z, Hsieh CY, Chen G, Liao B, Wang Z, Shen C, Cao D, Wu J, Hou T. Could graph neural networks learn better molecular representation for drug discovery? A comparison study of descriptor-based and graph-based models. Journal of Cheminformatics. 13: 12. PMID 33597034 DOI: 10.1186/s13321-020-00479-8   
2021 Diegmiller R, Zhang L, Gameiro M, Barr J, Imran Alsous J, Schedl P, Shvartsman SY, Mischaikow K. Mapping parameter spaces of biological switches. Plos Computational Biology. 17: e1008711. PMID 33556054 DOI: 10.1371/journal.pcbi.1008711   
2021 Rubin DM, Achari S, Carlson CS, Letts RFR, Pantanowitz A, Postema M, Richards XL, Wigdorowitz B. Facilitating Understanding, Modeling and Simulation of Infectious Disease Epidemics in the Age of COVID-19. Frontiers in Public Health. 9: 593417. PMID 33643988 DOI: 10.3389/fpubh.2021.593417   
2021 Santos EE, Korah J, Subramanian S, Murugappan V, Huang ES, Laiteerapong N, Cinar A. Analyzing Medical Guideline Dissemination Behaviors using Culturally Infused Agent Based Modeling Framework. Ieee Journal of Biomedical and Health Informatics. PMID 33465031 DOI: 10.1109/JBHI.2021.3052809   
2021 Zeng W, He Y, Li B, Wang S. 3D Multiple-Antenna Channel Modeling and Propagation Characteristics Analysis for Mobile Internet of Things. Sensors (Basel, Switzerland). 21. PMID 33540603 DOI: 10.3390/s21030989   
2021 Vera J, Lischer C, Nenov M, Nikolov S, Lai X, Eberhardt M. Mathematical Modelling in Biomedicine: A Primer for the Curious and the Skeptic. International Journal of Molecular Sciences. 22. PMID 33430432 DOI: 10.3390/ijms22020547   
2021 Shahhosseini M, Hu G, Huber I, Archontoulis SV. Coupling machine learning and crop modeling improves crop yield prediction in the US Corn Belt. Scientific Reports. 11: 1606. PMID 33452349 DOI: 10.1038/s41598-020-80820-1   
2021 Ullah A, Ahmad S, Rahman GU, Alqarni MM, Mahmoud EE. Impact of Pangolin Bootleg Market on the Dynamics of COVID-19 Model. Results in Physics. 103913. PMID 33623730 DOI: 10.1016/j.rinp.2021.103913