Gideon Dreyfuss - Related publications

Biochemistry and Biophysics University of Pennsylvania, Philadelphia, PA, United States 
Spinal Muscular Atrophy, RNA binding proteins, Splicing, High-Throughput Screening
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Shields EJ, Petracovici AF, Bonasio R. lncRedibly versatile: biochemical and biological functions of long noncoding RNAs. The Biochemical Journal. 476: 1083-1104. PMID 30971458 DOI: 10.1042/BCJ20180440   
2019 Albaqami M, Laluk K, Reddy ASN. The Arabidopsis splicing regulator SR45 confers salt tolerance in a splice isoform-dependent manner. Plant Molecular Biology. PMID 30968308 DOI: 10.1007/s11103-019-00864-4   
2019 Reinkemeier CD, Girona GE, Lemke EA. Designer membraneless organelles enable codon reassignment of selected mRNAs in eukaryotes. Science (New York, N.Y.). 363. PMID 30923194 DOI: 10.1126/science.aaw2644   
2019 Peciuliene I, Vilys L, Jakubauskiene E, Zaliauskiene L, Kanopka A. Hypoxia alters splicing of the cancer associated Fas gene. Experimental Cell Research. PMID 31002816 DOI: 10.1016/j.yexcr.2019.04.015   
2019 Li Z, Li Z, Wang L, Long C, Zheng Z, Zhuang X. ZCCHC13-mediated induction of human liver cancer is associated with the modulation of DNA methylation and the AKT/ERK signaling pathway. Journal of Translational Medicine. 17: 108. PMID 30940166 DOI: 10.1186/s12967-019-1852-0   
2019 Jackson PEH, Huang J, Sharma M, Rasmussen SK, Hammarskjold ML, Rekosh D. A novel retroviral vector system to analyze expression from mRNA with retained introns using fluorescent proteins and flow cytometry. Scientific Reports. 9: 6467. PMID 31015546 DOI: 10.1038/s41598-019-42914-3   
2019 Chassé H, Boulben S, Glippa V, Pontheaux F, Cormier P, Morales J. In vivo analysis of protein translation activity in sea urchin eggs and embryos. Methods in Cell Biology. 151: 335-352. PMID 30948017 DOI: 10.1016/bs.mcb.2018.10.008   
2019 Zhu C, Jin G, Fang P, Zhang Y, Feng X, Tang Y, Qi W, Song R. Maize pentatricopeptide repeat protein DEK41 affects cis-splicing of mitochondrial nad4 intron 3 and seed development. Journal of Experimental Botany. PMID 31020318 DOI: 10.1093/jxb/erz193   
2019 Liu X, Schuessler PJ, Sahoo A, Walker SE. Reconstitution and Analyses of RNA Interactions with Eukaryotic Translation Initiation Factors and Ribosomal Preinitiation Complexes. Methods (San Diego, Calif.). PMID 30926531 DOI: 10.1016/j.ymeth.2019.03.024   
2019 Pervouchine D, Popov Y, Berry A, Borsari B, Frankish A, Guigó R. Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay. Nucleic Acids Research. PMID 30916337 DOI: 10.1093/nar/gkz193   
2019 Gallagher E, Song JM, Menon A, Mishra L, Chmiel AF, Garner AL. Consideration of Binding Kinetics in the Design of Stapled Peptide Mimics of the Disordered Proteins Eukaryotic Translation Initiation Factor 4E (eIF4E)-Binding Protein 1 (4E-BP1) and Eukaryotic Translation Initiation Factor 4G (eIF4G). Journal of Medicinal Chemistry. PMID 31033289 DOI: 10.1021/acs.jmedchem.9b00068   
2019 Kamenova I, Mukherjee P, Conic S, Mueller F, El-Saafin F, Bardot P, Garnier JM, Dembele D, Capponi S, Timmers HTM, Vincent SD, Tora L. Co-translational assembly of mammalian nuclear multisubunit complexes. Nature Communications. 10: 1740. PMID 30988355 DOI: 10.1038/s41467-019-09749-y   
2019 Myler PJ, McDonald JA, Alcolea PJ, Sur A. Quantitative RNA Analysis Using RNA-Seq. Methods in Molecular Biology (Clifton, N.J.). 1971: 95-108. PMID 30980299 DOI: 10.1007/978-1-4939-9210-2_4   
2019 Neumann A, Schindler M, Olofsson D, Wilhelmi I, Schürmann A, Heyd F. Genome-wide identification of alternative splicing events that regulate protein transport across the secretory pathway. Journal of Cell Science. PMID 30890649 DOI: 10.1242/jcs.230201   
2019 Jones JL, Hofmann KB, Cowan AT, Temiakov D, Cramer P, Anikin M. Yeast mitochondrial protein Pet111p binds directly to two distinct targets in mRNA, suggesting a mechanism of translational activation. The Journal of Biological Chemistry. PMID 30910813 DOI: 10.1074/jbc.RA118.005355   
2019 Liao SE, Kandasamy SK, Zhu L, Fukunaga R. DEAD-box RNA helicase Belle post-transcriptionally promotes gene expression in an ATPase activity-dependent manner. Rna (New York, N.Y.). PMID 30979781 DOI: 10.1261/rna.070268.118   
2019 Rahman SK, Okazawa H, Chen YW. Frameshift PQBP-1 mutants K192S and R153S implicated in X-linked intellectual disability form stable dimers. Journal of Structural Biology. PMID 30951824 DOI: 10.1016/j.jsb.2019.04.003   
2019 Lee SH, Mayr C. Gain of Additional BIRC3 Protein Functions through 3'-UTR-Mediated Protein Complex Formation. Molecular Cell. PMID 30948266 DOI: 10.1016/j.molcel.2019.03.006   
2019 Hodson DJ, Screen M, Turner M. RNA binding proteins in hematopoiesis and hematological malignancy. Blood. PMID 30967369 DOI: 10.1182/blood-2018-10-839985   
2019 Siam A, Baker M, Amit L, Regev G, Rabner A, Najar RA, Bentata M, Dahan S, Cohen K, Araten S, Nevo Y, Kay G, Mandel-Gutfreund Y, Salton M. Regulation of alternative splicing by p300-mediated acetylation of splicing factors. Rna (New York, N.Y.). PMID 30988101 DOI: 10.1261/rna.069856.118   
2019 Jang S, Cook NJ, Pye VE, Bedwell GJ, Dudek AM, Singh PK, Cherepanov P, Engelman AN. Differential role for phosphorylation in alternative polyadenylation function versus nuclear import of SR-like protein CPSF6. Nucleic Acids Research. PMID 30916345 DOI: 10.1093/nar/gkz206   
2019 De Bortoli F, Neumann A, Kotte A, Timmermann B, Schüler T, Wahl MC, Loll B, Heyd F. Increased versatility despite reduced molecular complexity: evolution, structure and function of metazoan splicing factor PRPF39. Nucleic Acids Research. PMID 30949712 DOI: 10.1093/nar/gkz243   
2019 Aparisi Rey A, Karaulanov E, Sharopov S, Arab K, Schäfer A, Gierl M, Guggenhuber S, Brandes C, Pennella L, Gruhn WH, Jelinek R, Maul C, Conrad A, Kilb W, Luhmann HJ, et al. Gadd45α modulates aversive learning through post-transcriptional regulation of memory-related mRNAs. Embo Reports. PMID 30948457 DOI: 10.15252/embr.201846022   
2019 Hughes CK, Maalouf SW, Liu WS, Pate JL. Molecular profiling demonstrates modulation of immune cell function and matrix remodeling during luteal rescue†. Biology of Reproduction. PMID 30915454 DOI: 10.1093/biolre/ioz037   
2019 Takayama KI. Splicing Factors Have an Essential Role in Prostate Cancer Progression and Androgen Receptor Signaling. Biomolecules. 9. PMID 30939845 DOI: 10.3390/biom9040131   
2019 Kachaev ZM, Lebedeva LA, Shaposhnikov AV, Moresco JJ, Yates JR, Schedl P, Shidlovskii YV. Paip2 cooperates with Cbp80 at an active promoter and participates in RNA Polymerase II phosphorylation in Drosophila. Febs Letters. PMID 31001806 DOI: 10.1002/1873-3468.13391   
2019 Marranci A, D'Aurizio R, Vencken S, Mero S, Guzzolino E, Rizzo M, Pitto L, Pellegrini M, Chiorino G, Greene CM, Poliseno L. Systematic evaluation of the microRNAome through miR-CATCHv2.0 identifies positive and negative regulators of BRAF-X1 mRNA. Rna Biology. PMID 30929607 DOI: 10.1080/15476286.2019.1600934   
2019 Ma H, Martin K, Dixon D, Hernandez AG, Weber GM. Transcriptome analysis of egg viability in rainbow trout, Oncorhynchus mykiss. Bmc Genomics. 20: 319. PMID 31029084 DOI: 10.1186/s12864-019-5690-5   
2019 Ma H, Martin K, Dixon D, Hernandez AG, Weber GM. Transcriptome analysis of egg viability in rainbow trout, Oncorhynchus mykiss. Bmc Genomics. 20: 319. PMID 31029084 DOI: 10.1186/s12864-019-5690-5   
2019 Yu CY, Kuo HC. The emerging roles and functions of circular RNAs and their generation. Journal of Biomedical Science. 26: 29. PMID 31027496 DOI: 10.1186/s12929-019-0523-z   
2019 Zhang L, Zhou W, Che L, Rochaix JD, Lu C, Li W, Peng L. PPR Protein BFA2 Is Essential for the Accumulation of the Transcript in Chloroplasts. Frontiers in Plant Science. 10: 446. PMID 31031784 DOI: 10.3389/fpls.2019.00446   
2019 Cherry PD, Peach SE, Hesselberth JR. Multiple decay events target mRNA during splicing to regulate the unfolded protein response. Elife. 8. PMID 30874502 DOI: 10.7554/eLife.42262   
2019 Kim JS, He X, Liu J, Duan Z, Kim T, Gerard J, Kim B, Pillai MM, Lane WS, Noble WS, Budnik B, Waldman T. Systematic proteomics of endogenous human cohesin reveals an interaction with diverse splicing factors and RNA binding proteins required for mitotic progression. The Journal of Biological Chemistry. PMID 31010829 DOI: 10.1074/jbc.RA119.007832   
2019 Zhao L, Ren C, Chen T, Sun H, Wu X, Jiang X, Huang W. The first cloned sea cucumber FADD from Holothuria leucospilota: Molecular characterization, inducible expression and involvement of apoptosis. Fish & Shellfish Immunology. PMID 30991146 DOI: 10.1016/j.fsi.2019.04.030   
2019 Liu X, Yao Z, Jin M, Namkoong S, Yin Z, Lee JH, Klionsky DJ. Dhh1 promotes autophagy-related protein translation during nitrogen starvation. Plos Biology. 17: e3000219. PMID 30973873 DOI: 10.1371/journal.pbio.3000219   
2019 Akat KM, Lee YA, Hurley A, Morozov P, Max KE, Brown M, Bogardus K, Sopeyin A, Hildner K, Diacovo TG, Neurath MF, Borggrefe M, Tuschl T. Detection of circulating extracellular mRNAs by modified small-RNA-sequencing analysis. Jci Insight. 5. PMID 30973829 DOI: 10.1172/jci.insight.127317   
2019 Gomez GN, Abrar F, Dodhia MP, Gonzalez FG, Nag A. SARS coronavirus protein nsp1 disrupts localization of Nup93 from the nuclear pore complex. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. PMID 30943371 DOI: 10.1139/bcb-2018-0394   
2019 Bitencourt TA, Oliveira FB, Sanches PR, Rossi A, Martinez-Rossi NM. The prp4 kinase gene and related spliceosome factor genes in Trichophyton rubrum respond to nutrients and antifungals. Journal of Medical Microbiology. PMID 30900975 DOI: 10.1099/jmm.0.000967   
2019 Santos DA, Shi L, Tu BP, Weissman JS. Cycloheximide can distort measurements of mRNA levels and translation efficiency. Nucleic Acids Research. PMID 30916348 DOI: 10.1093/nar/gkz205   
2019 Wang S, He F, Li Z, Hu Y, Huangfu N, Chen X. YB1 protects cardiac myocytes against H2O2‑induced injury via suppression of PIAS3 mRNA and phosphorylation of STAT3. Molecular Medicine Reports. PMID 30942400 DOI: 10.3892/mmr.2019.10119   
2019 Ryu I, Kim YK. AU-rich element-mediated mRNA decay via the butyrate response factor 1 controls cellular levels of polyadenylated replication-dependent histone mRNAs. The Journal of Biological Chemistry. PMID 30962286 DOI: 10.1074/jbc.AC118.006766   
2019 Wu Y, Chen H, Chen Y, Qu L, Zhang E, Wang Z, Wu Y, Yang R, Mao R, Lu C, Fan Y. HPV shapes tumor transcriptome by globally modifying the pool of RNA binding protein-binding motif. Aging. PMID 31039132 DOI: 10.18632/aging.101927   
2019 Kwon J, Park S, Seong MJ, Choi I, Kim NH. Corrigendum to: Cytoplasmic polyadenylation element binding protein 2 (CPEB2) is required for tight-junction assembly for establishment of porcine trophectoderm epithelium. Reproduction, Fertility, and Development. 31: 632. PMID 31039976 DOI: 10.1071/RD18098_CO   
2019 Pitchiaya S, Mourao MDA, Jalihal AP, Xiao L, Jiang X, Chinnaiyan AM, Schnell S, Walter NG. Dynamic Recruitment of Single RNAs to Processing Bodies Depends on RNA Functionality. Molecular Cell. PMID 30952514 DOI: 10.1016/j.molcel.2019.03.001   
2019 Bowler E, Oltean S. Alternative Splicing in Angiogenesis. International Journal of Molecular Sciences. 20. PMID 31027366 DOI: 10.3390/ijms20092067   
2019 Brant AC, Majerciak V, Moreira MAM, Zheng ZM. HPV18 Utilizes Two Alternative Branch Sites for E6*I Splicing to Produce E7 Protein. Virologica Sinica. PMID 30945125 DOI: 10.1007/s12250-019-00098-0   
2019 Wegener M, Ennen I, Walhorn V, Anselmetti D, Hütten A, Dietz KJ. Magnetic Tracking of Protein Synthesis in Microfluidic Environments-Challenges and Perspectives. Nanomaterials (Basel, Switzerland). 9. PMID 30970646 DOI: 10.3390/nano9040585   
2019 Luo M, Ding J, Li Y, Tang H, Qi P, Ma J, Wang J, Chen G, Pu Z, Li W, Li Z, Harwood W, Lan X, Deng M, Lu Z, et al. A single-base change at a splice site in Wx-A1 caused incorrect RNA splicing and gene inactivation in a wheat EMS mutant line. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 30993362 DOI: 10.1007/s00122-019-03340-1   
2019 Tomasello L, Cluts L, Croce CM. Experimental Validation of MicroRNA Targets: Mutagenesis of Binding Regions. Methods in Molecular Biology (Clifton, N.J.). 1970: 331-339. PMID 30963501 DOI: 10.1007/978-1-4939-9207-2_18   
2019 Zhang Y, Lee Y, Han K. Neuronal function and dysfunction of CYFIP2: from actin dynamics to early infantile epileptic encephalopathy. Bmb Reports. PMID 30982501