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Thomas Nieland - Publications

Affiliations: 
Massachusetts Institute of Technology, Cambridge, MA, United States 
 Stanford University, Palo Alto, CA 
Area:
Radiology
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2/36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Nieland TJ, Logan DJ, Saulnier J, Lam D, Johnson C, Root DE, Carpenter AE, Sabatini BL. High content image analysis identifies novel regulators of synaptogenesis in a high-throughput RNAi screen of primary neurons. Plos One. 9: e91744. PMID 24633176 DOI: 10.1371/Journal.Pone.0091744  0.461
2008 Nieland TJ, Shaw JT, Jaipuri FA, Duffner JL, Koehler AN, Banakos S, Zannis VI, Kirchhausen T, Krieger M. Identification of the molecular target of small molecule inhibitors of HDL receptor SR-BI activity. Biochemistry. 47: 460-72. PMID 18067275 DOI: 10.1021/Bi701277X  0.314
Low-probability matches (unlikely to be authored by this person)
2004 Nieland TJ, Feng Y, Brown JX, Chuang TD, Buckett PD, Wang J, Xie XS, McGraw TE, Kirchhausen T, Wessling-Resnick M. Chemical genetic screening identifies sulfonamides that raise organellar pH and interfere with membrane traffic. Traffic (Copenhagen, Denmark). 5: 478-92. PMID 15180825 DOI: 10.1111/J.1398-9219.2004.00193.X  0.284
2002 Nieland TJ, Penman M, Dori L, Krieger M, Kirchhausen T. Discovery of chemical inhibitors of the selective transfer of lipids mediated by the HDL receptor SR-BI. Proceedings of the National Academy of Sciences of the United States of America. 99: 15422-7. PMID 12438696 DOI: 10.1073/Pnas.222421399  0.276
2013 Fass DM, Reis SA, Ghosh B, Hennig KM, Joseph NF, Zhao WN, Nieland TJ, Guan JS, Kuhnle CE, Tang W, Barker DD, Mazitschek R, Schreiber SL, Tsai LH, Haggarty SJ. Crebinostat: a novel cognitive enhancer that inhibits histone deacetylase activity and modulates chromatin-mediated neuroplasticity. Neuropharmacology. 64: 81-96. PMID 22771460 DOI: 10.1016/J.Neuropharm.2012.06.043  0.255
2015 Dockendorff C, Faloon PW, Pu J, Yu M, Johnston S, Bennion M, Penman M, Nieland TJ, Dandapani S, Perez JR, Munoz B, Palmer MA, Schreiber SL, Krieger M. Benzo-fused lactams from a diversity-oriented synthesis (DOS) library as inhibitors of scavenger receptor BI (SR-BI)-mediated lipid uptake. Bioorganic & Medicinal Chemistry Letters. 25: 2100-5. PMID 25900219 DOI: 10.1016/J.Bmcl.2015.03.073  0.254
2015 Dockendorff C, Faloon PW, Yu M, Youngsaye W, Penman M, Nieland TJ, Nag PP, Lewis TA, Pu J, Bennion M, Negri J, Paterson C, Lam G, Dandapani S, Perez JR, et al. Indolinyl-Thiazole Based Inhibitors of Scavenger Receptor-BI (SR-BI)-Mediated Lipid Transport. Acs Medicinal Chemistry Letters. 6: 375-380. PMID 26478787 DOI: 10.1021/Ml500154Q  0.242
2015 Dockendorff C, Faloon PW, Germain A, Yu M, Youngsaye W, Nag PP, Bennion M, Penman M, Nieland TJ, Dandapani S, Perez JR, Munoz B, Palmer MA, Schreiber SL, Krieger M. Discovery of bisamide-heterocycles as inhibitors of scavenger receptor BI (SR-BI)-mediated lipid uptake. Bioorganic & Medicinal Chemistry Letters. 25: 2594-8. PMID 25958245 DOI: 10.1016/J.Bmcl.2015.03.074  0.242
2011 Yu M, Romer KA, Nieland TJ, Xu S, Saenz-Vash V, Penman M, Yesilaltay A, Carr SA, Krieger M. Exoplasmic cysteine Cys384 of the HDL receptor SR-BI is critical for its sensitivity to a small-molecule inhibitor and normal lipid transport activity. Proceedings of the National Academy of Sciences of the United States of America. 108: 12243-8. PMID 21746906 DOI: 10.1073/pnas.1109078108  0.235
2013 Liu Y, Marks K, Cowley GS, Carretero J, Liu Q, Nieland TJ, Xu C, Cohoon TJ, Gao P, Zhang Y, Chen Z, Altabef AB, Tchaicha JH, Wang X, Choe S, et al. Metabolic and functional genomic studies identify deoxythymidylate kinase as a target in LKB1-mutant lung cancer. Cancer Discovery. 3: 870-9. PMID 23715154 DOI: 10.1158/2159-8290.Cd-13-0015  0.231
2014 Oh HS, Bryant KF, Nieland TJ, Mazumder A, Bagul M, Bathe M, Root DE, Knipe DM. A targeted RNA interference screen reveals novel epigenetic factors that regulate herpesviral gene expression. Mbio. 5: e01086-13. PMID 24496796 DOI: 10.1128/Mbio.01086-13  0.227
2011 Nieland TJ, Xu S, Penman M, Krieger M. Negatively cooperative binding of high-density lipoprotein to the HDL receptor SR-BI. Biochemistry. 50: 1818-30. PMID 21254782 DOI: 10.1021/bi101657j  0.223
2007 Nieland TJ, Shaw JT, Jaipuri FA, Maliga Z, Duffner JL, Koehler AN, Krieger M. Influence of HDL-cholesterol-elevating drugs on the in vitro activity of the HDL receptor SR-BI. Journal of Lipid Research. 48: 1832-45. PMID 17533223 DOI: 10.1194/Jlr.M700209-Jlr200  0.221
2014 Giraud M, Jmari N, Du L, Carallis F, Nieland TJ, Perez-Campo FM, Bensaude O, Root DE, Hacohen N, Mathis D, Benoist C. An RNAi screen for Aire cofactors reveals a role for Hnrnpl in polymerase release and Aire-activated ectopic transcription. Proceedings of the National Academy of Sciences of the United States of America. 111: 1491-6. PMID 24434558 DOI: 10.1073/Pnas.1323535111  0.217
2013 Sharma K, Choi SY, Zhang Y, Nieland TJ, Long S, Li M, Huganir RL. High-throughput genetic screen for synaptogenic factors: identification of LRP6 as critical for excitatory synapse development. Cell Reports. 5: 1330-41. PMID 24316074 DOI: 10.1016/J.Celrep.2013.11.008  0.203
2009 Guan JS, Haggarty SJ, Giacometti E, Dannenberg JH, Joseph N, Gao J, Nieland TJ, Zhou Y, Wang X, Mazitschek R, Bradner JE, DePinho RA, Jaenisch R, Tsai LH. HDAC2 negatively regulates memory formation and synaptic plasticity. Nature. 459: 55-60. PMID 19424149 DOI: 10.1038/Nature07925  0.199
2021 Dingle YL, Bonzanni M, Liaudanskaya V, Nieland TJF, Kaplan DL. Integrated functional neuronal network analysis of 3D silk-collagen scaffold-based mouse cortical culture. Star Protocols. 2: 100292. PMID 33537680 DOI: 10.1016/j.xpro.2020.100292  0.179
2004 Nieland TJ, Chroni A, Fitzgerald ML, Maliga Z, Zannis VI, Kirchhausen T, Krieger M. Cross-inhibition of SR-BI- and ABCA1-mediated cholesterol transport by the small molecules BLT-4 and glyburide. Journal of Lipid Research. 45: 1256-65. PMID 15102890 DOI: 10.1194/Jlr.M300358-Jlr200  0.175
2005 Nieland TJ, Ehrlich M, Krieger M, Kirchhausen T. Endocytosis is not required for the selective lipid uptake mediated by murine SR-BI. Biochimica Et Biophysica Acta. 1734: 44-51. PMID 15866482 DOI: 10.1016/J.Bbalip.2005.02.007  0.172
2015 Dockendorff C, Faloon PW, Yu M, Youngsaye W, Penman M, Nieland TJF, Nag PP, Lewis TA, Pu J, Bennion M, Negri J, Paterson C, Lam G, Dandapani S, Perez JR, et al. Indolinyl-thiazole based inhibitors of scavenger receptor-BI (SR-BI)-mediated lipid transport Acs Medicinal Chemistry Letters. 6: 375-380. DOI: 10.1021/ml500154q  0.166
2010 Pavri R, Gazumyan A, Jankovic M, Di Virgilio M, Klein I, Ansarah-Sobrinho C, Resch W, Yamane A, Reina San-Martin B, Barreto V, Nieland TJ, Root DE, Casellas R, Nussenzweig MC. Activation-induced cytidine deaminase targets DNA at sites of RNA polymerase II stalling by interaction with Spt5. Cell. 143: 122-33. PMID 20887897 DOI: 10.1016/J.Cell.2010.09.017  0.165
2020 Dingle YL, Liaudanskaya V, Finnegan LT, Berlind KC, Mizzoni C, Georgakoudi I, Nieland TJF, Kaplan DL. Functional Characterization of Three-Dimensional Cortical Cultures for In Vitro Modeling of Brain Networks. Iscience. 23: 101434. PMID 32805649 DOI: 10.1016/J.Isci.2020.101434  0.16
2005 Chroni A, Nieland TJ, Kypreos KE, Krieger M, Zannis VI. SR-BI mediates cholesterol efflux via its interactions with lipid-bound ApoE. Structural mutations in SR-BI diminish cholesterol efflux. Biochemistry. 44: 13132-43. PMID 16185081 DOI: 10.1021/Bi051029O  0.157
2018 McKay TB, Seyed-Razavi Y, Ghezzi CE, Dieckmann G, Nieland TJF, Cairns DM, Pollard RE, Hamrah P, Kaplan DL. Corneal pain and experimental model development. Progress in Retinal and Eye Research. PMID 30453079 DOI: 10.1016/J.Preteyeres.2018.11.005  0.149
2019 Ren T, Grosshäuser B, Sridhar K, Nieland TJF, Tocchio A, Schepers U, Demirci U. 3-D geometry and irregular connectivity dictate neuronal firing in frequency domain and synchronization. Biomaterials. 197: 171-181. PMID 30660993 DOI: 10.1016/J.Biomaterials.2019.01.017  0.146
2004 Larsen JE, Massol RH, Nieland TJ, Kirchhausen T. HIV Nef-mediated major histocompatibility complex class I down-modulation is independent of Arf6 activity. Molecular Biology of the Cell. 15: 323-31. PMID 14617802 DOI: 10.1091/Mbc.E03-08-0578  0.146
2020 Liaudanskaya V, Chung JY, Mizzoni C, Rouleau N, Berk AN, Wu L, Turner JA, Georgakoudi I, Whalen MJ, Nieland TJF, Kaplan DL. Modeling Controlled Cortical Impact Injury in 3D Brain-Like Tissue Cultures. Advanced Healthcare Materials. e2000122. PMID 32406202 DOI: 10.1002/Adhm.202000122  0.139
2012 Gräff J, Rei D, Guan JS, Wang WY, Seo J, Hennig KM, Nieland TJ, Fass DM, Kao PF, Kahn M, Su SC, Samiei A, Joseph N, Haggarty SJ, Delalle I, et al. An epigenetic blockade of cognitive functions in the neurodegenerating brain. Nature. 483: 222-6. PMID 22388814 DOI: 10.1038/Nature10849  0.129
2022 Fiore NJ, Ganat YM, Devkota K, Batorsky R, Lei M, Lee K, Cowen LJ, Croft G, Noggle SA, Nieland TJF, Kaplan DL. Bioengineered models of Parkinson's disease using patient-derived dopaminergic neurons exhibit distinct biological profiles in a 3D microenvironment. Cellular and Molecular Life Sciences : Cmls. 79: 78. PMID 35044538 DOI: 10.1007/s00018-021-04047-7  0.128
2022 Fiore NJ, Tamer-Mahoney JD, Beheshti A, Nieland TJF, Kaplan DL. 3D biocomposite culture enhances differentiation of dopamine-like neurons from SH-SY5Y cells: A model for studying Parkinson's disease phenotypes. Biomaterials. 290: 121858. PMID 36272218 DOI: 10.1016/j.biomaterials.2022.121858  0.123
1996 Heimovaara-Dijkstra S, Nieland TJF, van der Meulen RM, Wang M. Abscisic acid-induced gene-expression requires the activity of protein(s) sensitive to the protein-tyrosine phosphatase inhibitor phenylarsine oxide Plant Growth Regulation. 18: 115-123. DOI: 10.1007/BF00028496  0.108
2020 Lovett ML, Nieland TJF, Dingle YL, Kaplan DL. Innovations in 3-Dimensional Tissue Models of Human Brain Physiology and Diseases. Advanced Functional Materials. 30. PMID 34211358 DOI: 10.1002/adfm.201909146  0.105
2023 Liaudanskaya V, Fiore NJ, Zhang Y, Milton Y, Kelly MF, Coe M, Barreiro A, Rose VK, Shapiro MR, Mullis AS, Shevzov-Zebrun A, Blurton-Jones M, Whalen MJ, Symes AJ, Georgakoudi I, ... Nieland TJF, et al. Mitochondria dysregulation contributes to secondary neurodegeneration progression post-contusion injury in human 3D in vitro triculture brain tissue model. Cell Death & Disease. 14: 496. PMID 37537168 DOI: 10.1038/s41419-023-05980-0  0.103
2020 Rouleau N, Cantley WL, Liaudanskaya V, Berk A, Du C, Rusk W, Peirent E, Koester C, Nieland TJF, Kaplan DL. A Long-Living Bioengineered Neural Tissue Platform to Study Neurodegeneration. Macromolecular Bioscience. e2000004. PMID 32065736 DOI: 10.1002/Mabi.202000004  0.099
2015 Bouyer C, Chen P, Güven S, Demirtaş TT, Nieland TJ, Padilla F, Demirci U. A Bio-Acoustic Levitational (BAL) Assembly Method for Engineering of Multilayered, 3D Brain-Like Constructs, Using Human Embryonic Stem Cell Derived Neuro-Progenitors. Advanced Materials (Deerfield Beach, Fla.). PMID 26554659 DOI: 10.1002/Adma.201503916  0.085
1996 Nieland TJ, Tan MC, Monne-van Muijen M, Koning F, Kruisbeek AM, van Bleek GM. Isolation of an immunodominant viral peptide that is endogenously bound to the stress protein GP96/GRP94. Proceedings of the National Academy of Sciences of the United States of America. 93: 6135-9. PMID 8650232 DOI: 10.1073/pnas.93.12.6135  0.056
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