Year |
Citation |
Score |
2017 |
Moriarty NW, Liebschner D, Klei HE, Echols N, Afonine PV, Headd J, Poon BK, Adams PD. Interactive Comparison and Remediation of Collections of Macromolecular Structures. Protein Science : a Publication of the Protein Society. PMID 28901593 DOI: 10.1002/Pro.3296 |
0.794 |
|
2017 |
Buchko GW, Echols N, Flynn EM, Ng H, Stephenson S, Kim HB, Myler PJ, Terwilliger TC, Alber T, Kim CY. Structural and biophysical characterization of the Mycobacterium tuberculosis protein Rv0577, a protein associated with neutral red staining of virulent tuberculosis strains and homolog of the Streptomyces coelicolor protein KbpA. Biochemistry. PMID 28692281 DOI: 10.1021/Acs.Biochem.7B00511 |
0.615 |
|
2016 |
Sauter NK, Echols N, Adams PD, Zwart PH, Kern J, Brewster AS, Koroidov S, Alonso-Mori R, Zouni A, Messinger J, Bergmann U, Yano J, Yachandra VK. No observable conformational changes in PSII. Nature. 533: E1-2. PMID 27193689 DOI: 10.1038/Nature17983 |
0.447 |
|
2015 |
Barad BA, Echols N, Wang RY, Cheng Y, DiMaio F, Adams PD, Fraser JS. EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy. Nature Methods. 12: 943-6. PMID 26280328 DOI: 10.1038/Nmeth.3541 |
0.523 |
|
2015 |
Morshed N, Echols N, Adams PD. Using support vector machines to improve elemental ion identification in macromolecular crystal structures. Acta Crystallographica. Section D, Biological Crystallography. 71: 1147-58. PMID 25945580 DOI: 10.1107/S1399004715004241 |
0.569 |
|
2015 |
Brewster AS, Sawaya MR, Rodriguez J, Hattne J, Echols N, McFarlane HT, Cascio D, Adams PD, Eisenberg DS, Sauter NK. Indexing amyloid peptide diffraction from serial femtosecond crystallography: new algorithms for sparse patterns. Acta Crystallographica. Section D, Biological Crystallography. 71: 357-66. PMID 25664747 DOI: 10.1107/S1399004714026145 |
0.539 |
|
2015 |
Bunkóczi G, McCoy AJ, Echols N, Grosse-Kunstleve RW, Adams PD, Holton JM, Read RJ, Terwilliger TC. Macromolecular X-ray structure determination using weak, single-wavelength anomalous data. Nature Methods. 12: 127-30. PMID 25532136 DOI: 10.1038/Nmeth.3212 |
0.586 |
|
2015 |
Hattne J, Echols N, Tran R, Kern J, Gildea RJ, Brewster AS, Alonso-Mori R, Glöckner C, Hellmich J, Laksmono H, Sierra RG, Lassalle-Kaiser B, Lampe A, Han G, Gul S, et al. Erratum: Corrigendum: Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers Nature Methods. 12: 692-692. DOI: 10.1038/Nmeth0715-692D |
0.319 |
|
2014 |
Sauter NK, Hattne J, Brewster AS, Echols N, Zwart PH, Adams PD. Improved crystal orientation and physical properties from single-shot XFEL stills. Acta Crystallographica. Section D, Biological Crystallography. 70: 3299-309. PMID 25478847 DOI: 10.1107/S1399004714024134 |
0.554 |
|
2014 |
Parkhurst JM, Brewster AS, Fuentes-Montero L, Waterman DG, Hattne J, Ashton AW, Echols N, Evans G, Sauter NK, Winter G. dxtbx: the diffraction experiment toolbox. Journal of Applied Crystallography. 47: 1459-1465. PMID 25242914 DOI: 10.1107/S1600576714011996 |
0.336 |
|
2014 |
Kern J, Tran R, Alonso-Mori R, Koroidov S, Echols N, Hattne J, Ibrahim M, Gul S, Laksmono H, Sierra RG, Gildea RJ, Han G, Hellmich J, Lassalle-Kaiser B, Chatterjee R, et al. Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy. Nature Communications. 5: 4371. PMID 25006873 DOI: 10.1038/Ncomms5371 |
0.525 |
|
2014 |
Headd JJ, Echols N, Afonine PV, Moriarty NW, Gildea RJ, Adams PD. Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement. Acta Crystallographica. Section D, Biological Crystallography. 70: 1346-56. PMID 24816103 DOI: 10.1107/S1399004714003277 |
0.776 |
|
2014 |
Echols N, Morshed N, Afonine PV, McCoy AJ, Miller MD, Read RJ, Richardson JS, Terwilliger TC, Adams PD. Automated identification of elemental ions in macromolecular crystal structures. Acta Crystallographica. Section D, Biological Crystallography. 70: 1104-14. PMID 24699654 DOI: 10.1107/S1399004714001308 |
0.55 |
|
2014 |
Hattne J, Echols N, Tran R, Kern J, Gildea RJ, Brewster AS, Alonso-Mori R, Glöckner C, Hellmich J, Laksmono H, Sierra RG, Lassalle-Kaiser B, Lampe A, Han G, Gul S, et al. Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers. Nature Methods. 11: 545-8. PMID 24633409 DOI: 10.1038/Nmeth.2887 |
0.548 |
|
2014 |
Echols N, Moriarty NW, Klei HE, Afonine PV, Bunkóczi G, Headd JJ, McCoy AJ, Oeffner RD, Read RJ, Terwilliger TC, Adams PD. Automating crystallographic structure solution and refinement of protein-ligand complexes. Acta Crystallographica. Section D, Biological Crystallography. 70: 144-54. PMID 24419387 DOI: 10.1107/S139900471302748X |
0.787 |
|
2014 |
Klei HE, Moriarty NW, Echols N, Terwilliger TC, Baldwin ET, Pokross M, Posy S, Adams PD. Ligand placement based on prior structures: the guided ligand-replacement method Acta Crystallographica Section D: Biological Crystallography. 70: 134-143. PMID 24419386 DOI: 10.1107/S1399004713030071 |
0.573 |
|
2014 |
Echols N, Morshed N, Moriarty N, Afonine P, Terwilliger T, Adams P. New tools for automated model completion and refinement Acta Crystallographica Section a Foundations and Advances. 70: C327-C327. DOI: 10.1107/S2053273314096727 |
0.384 |
|
2013 |
Bunkóczi G, Echols N, McCoy AJ, Oeffner RD, Adams PD, Read RJ. Phaser.MRage: automated molecular replacement. Acta Crystallographica. Section D, Biological Crystallography. 69: 2276-86. PMID 24189240 DOI: 10.1107/S0907444913022750 |
0.543 |
|
2013 |
DiMaio F, Echols N, Headd JJ, Terwilliger TC, Adams PD, Baker D. Improved low-resolution crystallographic refinement with Phenix and Rosetta. Nature Methods. 10: 1102-4. PMID 24076763 DOI: 10.1107/S2053273314092171 |
0.77 |
|
2013 |
Sauter NK, Hattne J, Grosse-Kunstleve RW, Echols N. New Python-based methods for data processing. Acta Crystallographica. Section D, Biological Crystallography. 69: 1274-82. PMID 23793153 DOI: 10.1107/S0907444913000863 |
0.341 |
|
2013 |
Kern J, Alonso-Mori R, Tran R, Hattne J, Gildea RJ, Echols N, Glöckner C, Hellmich J, Laksmono H, Sierra RG, Lassalle-Kaiser B, Koroidov S, Lampe A, Han G, Gul S, et al. Simultaneous femtosecond X-ray spectroscopy and diffraction of photosystem II at room temperature. Science (New York, N.Y.). 340: 491-5. PMID 23413188 DOI: 10.1126/Science.1234273 |
0.544 |
|
2012 |
Alonso-Mori R, Kern J, Gildea RJ, Sokaras D, Weng TC, Lassalle-Kaiser B, Tran R, Hattne J, Laksmono H, Hellmich J, Glöckner C, Echols N, Sierra RG, Schafer DW, Sellberg J, et al. Energy-dispersive X-ray emission spectroscopy using an X-ray free-electron laser in a shot-by-shot mode. Proceedings of the National Academy of Sciences of the United States of America. 109: 19103-7. PMID 23129631 DOI: 10.1073/Pnas.1211384109 |
0.558 |
|
2012 |
Sierra RG, Laksmono H, Kern J, Tran R, Hattne J, Alonso-Mori R, Lassalle-Kaiser B, Glöckner C, Hellmich J, Schafer DW, Echols N, Gildea RJ, Grosse-Kunstleve RW, Sellberg J, McQueen TA, et al. Nanoflow electrospinning serial femtosecond crystallography. Acta Crystallographica. Section D, Biological Crystallography. 68: 1584-7. PMID 23090408 DOI: 10.1107/S0907444912038152 |
0.528 |
|
2012 |
Echols N, Grosse-Kunstleve RW, Afonine PV, Bunkóczi G, Chen VB, Headd JJ, McCoy AJ, Moriarty NW, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Adams PD. Graphical tools for macromolecular crystallography in PHENIX. Journal of Applied Crystallography. 45: 581-586. PMID 22675231 DOI: 10.1107/S0021889812017293 |
0.747 |
|
2012 |
Kern J, Alonso-Mori R, Hellmich J, Tran R, Hattne J, Laksmono H, Glöckner C, Echols N, Sierra RG, Sellberg J, Lassalle-Kaiser B, Gildea RJ, Glatzel P, Grosse-Kunstleve RW, Latimer MJ, et al. Room temperature femtosecond X-ray diffraction of photosystem II microcrystals. Proceedings of the National Academy of Sciences of the United States of America. 109: 9721-6. PMID 22665786 DOI: 10.1073/Pnas.1204598109 |
0.523 |
|
2012 |
Headd JJ, Echols N, Afonine PV, Grosse-Kunstleve RW, Chen VB, Moriarty NW, Richardson DC, Richardson JS, Adams PD. Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution. Acta Crystallographica. Section D, Biological Crystallography. 68: 381-90. PMID 22505258 DOI: 10.1107/S0907444911047834 |
0.773 |
|
2012 |
Afonine PV, Grosse-Kunstleve RW, Echols N, Headd JJ, Moriarty NW, Mustyakimov M, Terwilliger TC, Urzhumtsev A, Zwart PH, Adams PD. Towards automated crystallographic structure refinement with phenix.refine. Acta Crystallographica. Section D, Biological Crystallography. 68: 352-67. PMID 22505256 DOI: 10.1107/S0907444912001308 |
0.784 |
|
2012 |
Terwilliger TC, Dimaio F, Read RJ, Baker D, Bunkóczi G, Adams PD, Grosse-Kunstleve RW, Afonine PV, Echols N. phenix.mr_rosetta: molecular replacement and model rebuilding with Phenix and Rosetta. Journal of Structural and Functional Genomics. 13: 81-90. PMID 22418934 DOI: 10.1007/S10969-012-9129-3 |
0.577 |
|
2012 |
Totir M, Echols N, Nanao M, Gee CL, Moskaleva A, Gradia S, Iavarone AT, Berger JM, May AP, Zubieta C, Alber T. Macro-to-micro structural proteomics: native source proteins for high-throughput crystallization. Plos One. 7: e32498. PMID 22393408 DOI: 10.1371/Journal.Pone.0032498 |
0.628 |
|
2011 |
Fraser JS, Van Den Bedem H, Samelson AJ, Lang PT, Holton JM, Echols N, Alber T. Accessing protein conformational ensembles using room-temperature X-ray crystallography Proceedings of the National Academy of Sciences of the United States of America. 108: 16247-16252. PMID 21918110 DOI: 10.1073/Pnas.1111325108 |
0.648 |
|
2011 |
Adams PD, Afonine PV, Bunkóczi G, Chen VB, Echols N, Headd JJ, Hung LW, Jain S, Kapral GJ, Grosse Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner RD, Read RJ, Richardson DC, et al. The Phenix software for automated determination of macromolecular structures. Methods (San Diego, Calif.). 55: 94-106. PMID 21821126 DOI: 10.1016/J.Ymeth.2011.07.005 |
0.787 |
|
2011 |
Echols N, Afonine PV, Bunkóczi G, Chen VB, Davis IW, Headd JJ, Hung L-, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, et al. Graphical tools for structure determination and refinement inPHENIX Acta Crystallographica Section a Foundations of Crystallography. 67: C161-C162. DOI: 10.1107/S0108767311096024 |
0.754 |
|
2010 |
Lombana TN, Echols N, Good MC, Thomsen ND, Ng HL, Greenstein AE, Falick AM, King DS, Alber T. Allosteric activation mechanism of the Mycobacterium tuberculosis receptor Ser/Thr protein kinase, PknB. Structure (London, England : 1993). 18: 1667-77. PMID 21134645 DOI: 10.1016/J.Str.2010.09.019 |
0.75 |
|
2010 |
Lang PT, Ng HL, Fraser JS, Corn JE, Echols N, Sales M, Holton JM, Alber T. Automated electron-density sampling reveals widespread conformational polymorphism in proteins. Protein Science : a Publication of the Protein Society. 19: 1420-31. PMID 20499387 DOI: 10.1002/Pro.423 |
0.62 |
|
2010 |
Adams PD, Afonine PV, Bunkóczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallographica. Section D, Biological Crystallography. 66: 213-21. PMID 20124702 DOI: 10.1107/S0907444909052925 |
0.771 |
|
2007 |
Fraser JS, Merlie JP, Echols N, Weisfield SR, Mignot T, Wemmer DE, Zusman DR, Alber T. An atypical receiver domain controls the dynamic polar localization of the Myxococcus xanthus social motility protein FrzS. Molecular Microbiology. 65: 319-32. PMID 17573816 DOI: 10.1111/J.1365-2958.2007.05785.X |
0.618 |
|
2007 |
Cellitti J, Llinas M, Echols N, Shank EA, Gillespie B, Kwon E, Crowder SM, Dahlquist FW, Alber T, Marqusee S. Exploring subdomain cooperativity in T4 lysozyme I: structural and energetic studies of a circular permutant and protein fragment. Protein Science : a Publication of the Protein Society. 16: 842-51. PMID 17400926 DOI: 10.1110/Ps.062628607 |
0.628 |
|
2007 |
Greenstein AE, Echols N, Lombana TN, King DS, Alber T. Allosteric activation by dimerization of the PknD receptor Ser/Thr protein kinase from Mycobacterium tuberculosis. The Journal of Biological Chemistry. 282: 11427-35. PMID 17242402 DOI: 10.1074/Jbc.M610193200 |
0.739 |
|
2005 |
Greenstein AE, Grundner C, Echols N, Gay LM, Lombana TN, Miecskowski CA, Pullen KE, Sung PY, Alber T. Structure/function studies of Ser/Thr and Tyr protein phosphorylation in Mycobacterium tuberculosis. Journal of Molecular Microbiology and Biotechnology. 9: 167-81. PMID 16415590 DOI: 10.1159/000089645 |
0.733 |
|
2005 |
Yuan M, Deleuil F, Fällman M, Herro R, Cossart P, Buchrieser C, Gouin E, Glaser P, Deutscher J, Echols N, Lombana TN, Miecskowski CA, Pullen KE, Sung P, Alber T, et al. Contents Vol. 9, 2005 Journal of Molecular Microbiology and Biotechnology. 9: 239-240. DOI: 10.1159/000091040 |
0.488 |
|
2005 |
Yuan M, Deleuil F, Fällman M, Herro R, Cossart P, Buchrieser C, Gouin E, Glaser P, Deutscher J, Echols N, Lombana TN, Miecskowski CA, Pullen KE, Sung P, Alber T, et al. Subject Index Vol. 9, 2005 Journal of Molecular Microbiology and Biotechnology. 9: 238-238. DOI: 10.1159/000091039 |
0.488 |
|
2004 |
Gerstein M, Echols N. Exploring the range of protein flexibility, from a structural proteomics perspective. Current Opinion in Chemical Biology. 8: 14-9. PMID 15036151 DOI: 10.1016/J.Cbpa.2003.12.006 |
0.353 |
|
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