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Timothy A. McCaffrey - Publications

Affiliations: 
Biochemistry and Molecular Biology The George Washington University, Washington, DC, United States 
Area:
Molecular Biology, Biochemistry, Medicine and Surgery
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Meltzer AC, Wargowsky RS, Moran S, Jordan T, Toma I, Jepson T, Shu S, Ma Y, McCaffrey TA. Publisher Correction: Diagnostic accuracy of novel mRNA blood biomarkers of infection to predict outcomes in emergency department patients with undifferentiated abdominal pain. Scientific Reports. 13: 21991. PMID 38081903 DOI: 10.1038/s41598-023-48752-8  0.678
2023 McCaffrey TA, Toma I, Yang Z, Katz R, Reiner J, Mazhari R, Shah P, Falk Z, Wargowsky R, Goldman J, Jones D, Shtokalo D, Antonets D, Jepson T, Fetisova A, et al. RNAseq profiling of blood from patients with coronary artery disease: Signature of a T cell imbalance. Journal of Molecular and Cellular Cardiology Plus. 4. PMID 37303712 DOI: 10.1016/j.jmccpl.2023.100033  0.695
2023 Meltzer AC, Wargowsky RS, Moran S, Jordan T, Toma I, Jepson T, Shu S, Ma Y, McCaffrey TA. Diagnostic accuracy of novel mRNA blood biomarkers of infection to predict outcomes in emergency department patients with undifferentiated abdominal pain. Scientific Reports. 13: 2297. PMID 36759691 DOI: 10.1038/s41598-023-29385-3  0.681
2022 Wargodsky R, Dela Cruz P, LaFleur J, Yamane D, Kim JS, Benjenk I, Heinz E, Irondi OO, Farrar K, Toma I, Jordan T, Goldman J, McCaffrey TA. RNA Sequencing in COVID-19 patients identifies neutrophil activation biomarkers as a promising diagnostic platform for infections. Plos One. 17: e0261679. PMID 35081105 DOI: 10.1371/journal.pone.0261679  0.708
2021 St Laurent G, Toma I, Seilheimer B, Cesnulevicius K, Schultz M, Tackett M, Zhou J, Ri M, Shtokalo D, Antonets D, Jepson T, McCaffrey TA. RNAseq analysis of treatment-dependent signaling changes during inflammation in a mouse cutaneous wound healing model. Bmc Genomics. 22: 854. PMID 34823472 DOI: 10.1186/s12864-021-08083-2  0.687
2021 McCaffrey TA, Toma I, Yang Z, Katz R, Reiner J, Mazhari R, Shah P, Tackett M, Jones D, Jepson T, Falk Z, Wargodsky R, Shtakalo D, Antonets D, Ertle J, et al. RNA sequencing of blood in coronary artery disease: involvement of regulatory T cell imbalance. Bmc Medical Genomics. 14: 216. PMID 34479557 DOI: 10.1186/s12920-021-01062-2  0.699
2018 Hahn A, Bendall ML, Gibson KM, Chaney H, Sami I, Perez GF, Koumbourlis AC, McCaffrey TA, Freishtat RJ, Crandall KA. Benchmark Evaluation of True Single Molecular Sequencing to Determine Cystic Fibrosis Airway Microbiome Diversity. Frontiers in Microbiology. 9: 1069. PMID 29887843 DOI: 10.3389/Fmicb.2018.01069  0.31
2018 Laurent GS, Toma I, Tackett M, Zhou J, Ri M, Shtokalo D, Vyatkin Y, Jepson T, Cesnulevicius K, Seilheimer B, Mccaffrey T. AB0080 Differential effects of tr14 versus diclofenac on pro-resolving lipid mediators revealed by rnaseq Annals of the Rheumatic Diseases. 77: 1237-1238. DOI: 10.1136/Annrheumdis-2018-Eular.3789  0.719
2018 Laurent GS, Toma I, Seilheimer B, Tackett M, Zhou J, Ri M, Shtokalo D, Vyatkin Y, Jepson T, Cesnulevicius K, Mccaffrey T. THU0021 Differential effects of tr14 versus diclofenac on cox/lox pathways revealed by rnaseq Annals of the Rheumatic Diseases. 77: 238-239. DOI: 10.1136/Annrheumdis-2018-Eular.3779  0.72
2017 St Laurent G, Seilheimer B, Tackett M, Zhou J, Shtokalo D, Vyatkin Y, Ri M, Toma I, Jones D, McCaffrey TA. Deep Sequencing Transcriptome Analysis of Murine Wound Healing: Effects of a Multicomponent, Multitarget Natural Product Therapy-Tr14. Frontiers in Molecular Biosciences. 4: 57. PMID 28879183 DOI: 10.3389/Fmolb.2017.00057  0.711
2017 Zhang JW, Liu TF, Chen XH, Liang WY, Feng XR, Wang L, Fu SW, McCaffrey TA, Liu ML. Validation of aspirin response-related transcripts in patients with coronary artery disease and preliminary investigation on CMTM5 function. Gene. PMID 28457985 DOI: 10.1016/J.Gene.2017.04.041  0.344
2017 Lai Y, Zhang F, Nayak TK, Modarres R, Lee NH, McCaffrey TA. Detecting discordance enrichment among a series of two-sample genome-wide expression data sets. Bmc Genomics. 18: 1050. PMID 28198679 DOI: 10.1186/S12864-016-3265-2  0.324
2017 Lai Y, Zhang F, Nayak TK, Modarres R, Lee NH, McCaffrey TA. An efficient concordant integrative analysis of multiple large-scale two-sample expression data sets. Bioinformatics (Oxford, England). PMID 28174897 DOI: 10.1093/Bioinformatics/Btx061  0.315
2017 Laurent G, Seilheimer B, Tackett M, Zhou J, Shtokalo D, Vyatkin Y, Kapranov P, Toma I, Mccaffrey T. THU0007 Deep sequencing transcriptome analysis of the effect of traumeel versus diclofenac therapeutic action in wound healing Annals of the Rheumatic Diseases. 76: 202-202. DOI: 10.1136/Annrheumdis-2017-Eular.4964  0.351
2016 Chawla LS, Toma I, Davison D, Vaziri K, Lee J, Lucas R, Seneff MG, Nyhan A, McCaffrey TA. Acute appendicitis: transcript profiling of blood identifies promising biomarkers and potential underlying processes. Bmc Medical Genomics. 9: 40. PMID 27417541 DOI: 10.1186/S12920-016-0200-Y  0.711
2016 Hilton SK, Castro-Nallar E, Pérez-Losada M, Toma I, McCaffrey TA, Hoffman EP, Siegel MO, Simon GL, Johnson WE, Crandall KA. Metataxonomic and Metagenomic Approaches vs. Culture-Based Techniques for Clinical Pathology. Frontiers in Microbiology. 7: 484. PMID 27092134 DOI: 10.3389/Fmicb.2016.00484  0.707
2016 Laurent GS, Vyatkin Y, Antonets D, Ri M, Qi Y, Saik O, Shtokalo D, de Hoon MJ, Kawaji H, Itoh M, Lassmann T, Arner E, Forrest AR, Nicolas E, ... McCaffrey TA, et al. Functional annotation of the vlinc class of non-coding RNAs using systems biology approach. Nucleic Acids Research. PMID 27001520 DOI: 10.1093/Nar/Gkw162  0.347
2014 Callier SL, Toma I, McCaffrey T, Harralson AF, O'Brien TJ. Engaging the next generation of healthcare professionals in genomics: planning for the future. Personalized Medicine. 11: 89-98. PMID 29751387 DOI: 10.2217/Pme.13.99  0.705
2014 Toma I, Siegel MO, Keiser J, Yakovleva A, Kim A, Davenport L, Devaney J, Hoffman EP, Alsubail R, Crandall KA, Castro-Nallar E, Pérez-Losada M, Hilton SK, Chawla LS, McCaffrey TA, et al. Single-molecule long-read 16S sequencing to characterize the lung microbiome from mechanically ventilated patients with suspected pneumonia. Journal of Clinical Microbiology. 52: 3913-21. PMID 25143582 DOI: 10.1128/Jcm.01678-14  0.709
2014 Byrd AL, Perez-Rogers JF, Manimaran S, Castro-Nallar E, Toma I, McCaffrey T, Siegel M, Benson G, Crandall KA, Johnson WE. Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data. Bmc Bioinformatics. 15: 262. PMID 25091138 DOI: 10.1186/1471-2105-15-262  0.712
2014 Callier SL, Toma I, McCaffrey T, Harralson AF, O'Brien TJ. Engaging the next generation of healthcare professionals in genomics: Planning for the future Personalized Medicine. 11: 89-98. DOI: 10.2217/pme.13.99  0.691
2013 St Laurent G, Shtokalo D, Dong B, Tackett MR, Fan X, Lazorthes S, Nicolas E, Sang N, Triche TJ, McCaffrey TA, Xiao W, Kapranov P. VlincRNAs controlled by retroviral elements are a hallmark of pluripotency and cancer. Genome Biology. 14: R73. PMID 23876380 DOI: 10.1186/Gb-2013-14-7-R73  0.34
2013 McCaffrey TA, Tziros C, Lewis J, Katz R, Siegel R, Weglicki W, Kramer J, Mak IT, Toma I, Chen L, Benas E, Lowitt A, Rao S, Witkin L, Lian Y, et al. Genomic profiling reveals the potential role of TCL1A and MDR1 deficiency in chemotherapy-induced cardiotoxicity. International Journal of Biological Sciences. 9: 350-60. PMID 23630447 DOI: 10.7150/Ijbs.6058  0.71
2013 St Laurent G, Shtokalo D, Tackett MR, Yang Z, Vyatkin Y, Milos PM, Seilheimer B, McCaffrey TA, Kapranov P. On the importance of small changes in RNA expression. Methods (San Diego, Calif.). 63: 18-24. PMID 23563143 DOI: 10.1016/J.Ymeth.2013.03.027  0.386
2013 Fallahi P, Katz R, Toma I, Li R, Reiner J, VanHouten K, Carpio L, Marshall L, Lian Y, Bupp S, Fu SW, Rickles F, Leitenberg D, Lai Y, Weksler BB, ... ... McCaffrey TA, et al. Aspirin insensitive thrombophilia: transcript profiling of blood identifies platelet abnormalities and HLA restriction. Gene. 520: 131-8. PMID 23454623 DOI: 10.1016/J.Gene.2013.02.032  0.703
2013 Laurent GS, Tackett M, McCaffrey T, Kapranov P. THU0016 Deep Sequencing Transcriptome Analysis of Traumeel Therapeutic Action in Wound Healing Annals of the Rheumatic Diseases. 72. DOI: 10.1136/Annrheumdis-2013-Eular.544  0.384
2012 St Laurent G, Shtokalo D, Tackett MR, Yang Z, Eremina T, Wahlestedt C, Urcuqui-Inchima S, Seilheimer B, McCaffrey TA, Kapranov P. Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells. Bmc Genomics. 13: 504. PMID 23006825 DOI: 10.1186/1471-2164-13-504  0.333
2012 Toma I, McCaffrey TA. Transforming growth factor-β and atherosclerosis: interwoven atherogenic and atheroprotective aspects. Cell and Tissue Research. 347: 155-75. PMID 21626289 DOI: 10.1007/S00441-011-1189-3  0.696
2011 Toma I, St Laurent G, McCaffrey TA. Toward knowing the whole human: next-generation sequencing for personalized medicine. Personalized Medicine. 8: 483-491. PMID 29783338 DOI: 10.2217/Pme.11.27  0.723
2011 Zhaorigetu S, Yang Z, Toma I, McCaffrey TA, Hu CA. Apolipoprotein L6, induced in atherosclerotic lesions, promotes apoptosis and blocks Beclin 1-dependent autophagy in atherosclerotic cells. The Journal of Biological Chemistry. 286: 27389-98. PMID 21646352 DOI: 10.1074/Jbc.M110.210245  0.7
2011 Toma I, St. Laurent G, McCaffrey TA. Toward knowing the whole human: Next-generation sequencing for personalized medicine Personalized Medicine. 8: 483-491. DOI: 10.2217/pme.11.27  0.71
2011 McCaffrey T, Tziros C, Lewis J, Siegel R, Katz R, Fu S, Toma I. GENOMIC ANALYSIS OF CHEMOTHERAPY-INDUCED CARDIOTOXICITY SUGGESTS A POSSIBLE ROLE OF SUPPRESSION OF THE TCL1A/AKT ANTI-APOPTOTIC PATHWAY Journal of the American College of Cardiology. 57: E253. DOI: 10.1016/S0735-1097(11)60253-2  0.713
2009 Yang Z, Gagarin D, St Laurent G, Hammell N, Toma I, Hu CA, Iwasa A, McCaffrey TA. Cardiovascular inflammation and lesion cell apoptosis: a novel connection via the interferon-inducible immunoproteasome. Arteriosclerosis, Thrombosis, and Vascular Biology. 29: 1213-9. PMID 19443843 DOI: 10.1161/Atvbaha.109.189407  0.705
2009 Heydarian M, McCaffrey T, Florea L, Yang Z, Ross MM, Zhou W, Maynard SE. Novel splice variants of sFlt1 are upregulated in preeclampsia. Placenta. 30: 250-255. PMID 19147226 DOI: 10.1016/J.Placenta.2008.12.010  0.3
2007 Klase Z, Kale P, Winograd R, Gupta MV, Heydarian M, Berro R, McCaffrey T, Kashanchi F. HIV-1 TAR element is processed by Dicer to yield a viral micro-RNA involved in chromatin remodeling of the viral LTR. Bmc Molecular Biology. 8: 63. PMID 17663774 DOI: 10.1186/1471-2199-8-63  0.313
2005 Cahan P, Ahmad AM, Burke H, Fu S, Lai Y, Florea L, Dharker N, Kobrinski T, Kale P, McCaffrey TA. List of lists-annotated (LOLA): a database for annotation and comparison of published microarray gene lists. Gene. 360: 78-82. PMID 16140476 DOI: 10.1016/J.Gene.2005.07.008  0.318
2005 Gagarin D, Yang Z, Butler J, Wimmer M, Du B, Cahan P, McCaffrey TA. Genomic profiling of acquired resistance to apoptosis in cells derived from human atherosclerotic lesions: potential role of STATs, cyclinD1, BAD, and Bcl-XL. Journal of Molecular and Cellular Cardiology. 39: 453-65. PMID 16005468 DOI: 10.1016/J.Yjmcc.2005.01.015  0.314
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