| Year |
Citation |
Score |
| 2020 |
Jolma A, Zhang J, Mondragón E, Morgunova E, Kivioja T, Laverty KU, Yin Y, Zhu F, Bourenkov G, Morris Q, Hughes TR, Maher LJ, Taipale J. Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences. Genome Research. PMID 32703884 DOI: 10.1101/Gr.258848.119 |
0.38 |
|
| 2019 |
Smestad J, Wilbanks B, Maher LJ. An in Vitro Selection Strategy Identifying Naked DNA That Localizes to Cell Nuclei. Journal of the American Chemical Society. 141: 18375-18379. PMID 31702902 DOI: 10.1021/Jacs.9B06736 |
0.484 |
|
| 2019 |
Sarangi MK, Zvoda V, Holte MN, Becker NA, Peters JP, Maher LJ, Ansari A. Evidence for a bind-then-bend mechanism for architectural DNA binding protein yNhp6A. Nucleic Acids Research. PMID 30698746 DOI: 10.1093/Nar/Gkz022 |
0.648 |
|
| 2019 |
Zvoda V, Sarangi MK, Nelson Holte M, Becker NA, Peters JP, Maher LJ, Ansari A. DNA Bending/Unbending Rates Revealed for Nonspecific Architectural DNA-Binding Protein yNhp6A Biophysical Journal. 116: 211a. DOI: 10.1016/J.Bpj.2018.11.1165 |
0.662 |
|
| 2018 |
McCauley MJ, Huo R, Becker N, Holte MN, Muthurajan UM, Rouzina I, Luger K, Maher LJ, Israeloff NE, Williams MC. Single and double box HMGB proteins differentially destabilize nucleosomes. Nucleic Acids Research. PMID 30445475 DOI: 10.1093/Nar/Gky1119 |
0.387 |
|
| 2018 |
Peters JP, Maher LJ. Approaches for Determining DNA Persistence Length Using Atomic Force Microscopy. Methods in Molecular Biology (Clifton, N.J.). 1837: 211-256. PMID 30109614 DOI: 10.1007/978-1-4939-8675-0_13 |
0.593 |
|
| 2018 |
Becker NA, Peters JP, Maher LJ. High-Resolution Characterization of DNA/Protein Complexes in Living Bacteria. Methods in Molecular Biology (Clifton, N.J.). 1837: 95-115. PMID 30109607 DOI: 10.1007/978-1-4939-8675-0_6 |
0.633 |
|
| 2018 |
Heider RM, Smestad JA, Lemus HN, Wilbanks B, Warrington AE, Peters JP, Rodriguez M, Maher LJ. An Assay that Predicts Efficacy for DNA Aptamers that Stimulate Remyelination in a Mouse Model of Multiple Sclerosis. Molecular Therapy. Methods & Clinical Development. 9: 270-277. PMID 29707601 DOI: 10.1016/J.Omtm.2018.03.005 |
0.566 |
|
| 2018 |
Becker NA, Schwab TL, Clark KJ, Maher LJ. Bacterial gene control by DNA looping using engineered dimeric transcription activator like effector (TALE) proteins. Nucleic Acids Research. PMID 29390154 DOI: 10.1093/Nar/Gky047 |
0.337 |
|
| 2018 |
Smestad JA, Maher LJ. Abstract 1291: Master regulator analysis of paragangliomas carrying SDH, VHL, or MAML3 genetic alterations Cancer Research. 78: 1291-1291. DOI: 10.1158/1538-7445.Am2018-1291 |
0.309 |
|
| 2018 |
Peters JP, Rao VN, Becker NA, Maher LJ. Cell Density Dependence of DNA Looping in E. coli Cultures Biophysical Journal. 114: 598a. DOI: 10.1016/J.Bpj.2017.11.3270 |
0.559 |
|
| 2017 |
Peters JP, Kowal EA, Pallan PS, Egli M, Maher LJ. Comparative analysis of inosine-substituted duplex DNA by circular dichroism and X-ray crystallography. Journal of Biomolecular Structure & Dynamics. 1-60. PMID 28818035 DOI: 10.1080/07391102.2017.1369164 |
0.607 |
|
| 2017 |
Murugesapillai D, McCauley MJ, Maher LJ, Williams MC. Single-molecule studies of high-mobility group B architectural DNA bending proteins. Biophysical Reviews. 9: 17-40. PMID 28303166 DOI: 10.1007/s12551-016-0236-4 |
0.4 |
|
| 2017 |
Becker NA, Schwab TL, Clark KJ, Maher LJ. Engineering DNA Looping in E. Coli Biophysical Journal. 112: 68a. DOI: 10.1016/J.Bpj.2016.11.411 |
0.456 |
|
| 2017 |
Peters JP, Maher LJ. Using Chromatin Conformation Capture (3C) to Investigate Length-Dependent Saccharomyces Cerevisiae Gene Looping with and without HMGB Proteins Biophysical Journal. 112: 218a. DOI: 10.1016/J.Bpj.2016.11.1204 |
0.581 |
|
| 2016 |
Mogil LS, Becker NA, Maher LJ. Supercoiling Effects on Short-Range DNA Looping in E. coli. Plos One. 11: e0165306. PMID 27783696 DOI: 10.1371/journal.pone.0165306 |
0.411 |
|
| 2016 |
Murugesapillai D, Lodeiro MF, Maher LJ, Cameron CE, Williams MC. TFAM Regulates Mitochondrial Transcription through Sequence-Specific DNA Looping Biophysical Journal. 110: 516a. DOI: 10.1016/J.Bpj.2015.11.2756 |
0.477 |
|
| 2015 |
Mondragón E, Maher LJ. Anti-Transcription Factor RNA Aptamers as Potential Therapeutics. Nucleic Acid Therapeutics. 26: 29-43. PMID 26509637 DOI: 10.1089/nat.2015.0566 |
0.31 |
|
| 2015 |
Mondragón E, Maher LJ. Anti-Transcription Factor RNA Aptamers as Potential Therapeutics. Nucleic Acid Therapeutics. 26: 29-43. PMID 26509637 DOI: 10.1089/nat.2015.0566 |
0.31 |
|
| 2015 |
Peters JP, Her YF, Maher LJ. Modeling dioxygenase enzyme kinetics in familial paraganglioma. Biology Open. 4: 1281-9. PMID 26369930 DOI: 10.1242/Bio.013623 |
0.473 |
|
| 2015 |
Mondragón E, Maher LJ. RNA aptamer inhibitors of a restriction endonuclease Nucleic Acids Research. 43: 7544-7555. PMID 26184872 DOI: 10.1093/nar/gkv702 |
0.412 |
|
| 2015 |
Becker NA, Maher LJ. High-resolution mapping of architectural DNA binding protein facilitation of a DNA repression loop in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 112: 7177-82. PMID 26039992 DOI: 10.1073/pnas.1500412112 |
0.446 |
|
| 2015 |
Her YF, Nelson-Holte M, Maher LJ. Oxygen concentration controls epigenetic effects in models of familial paraganglioma. Plos One. 10: e0127471. PMID 25985299 DOI: 10.1371/Journal.Pone.0127471 |
0.317 |
|
| 2015 |
Perschbacher K, Smestad JA, Peters JP, Standiford MM, Denic A, Wootla B, Warrington AE, Rodriguez M, Maher LJ. Quantitative PCR analysis of DNA aptamer pharmacokinetics in mice. Nucleic Acid Therapeutics. 25: 11-9. PMID 25536292 DOI: 10.1089/Nat.2014.0515 |
0.585 |
|
| 2015 |
Huo R, McCauley MJ, Becker N, Holte MHN, Muthurajan U, Luger K, Maher LJ, Israeloff N, Williams MC. Yeast HMGB Proteins Both Disrupt and Compact Nucleosomes Biophysical Journal. 108: 74a. DOI: 10.1016/J.Bpj.2014.11.440 |
0.357 |
|
| 2014 |
Murugesapillai D, McCauley MJ, Huo R, Nelson Holte MH, Stepanyants A, Maher LJ, Israeloff NE, Williams MC. DNA bridging and looping by HMO1 provides a mechanism for stabilizing nucleosome-free chromatin. Nucleic Acids Research. 42: 8996-9004. PMID 25063301 DOI: 10.1093/nar/gku635 |
0.438 |
|
| 2014 |
Peters JP, Mogil LS, McCauley MJ, Williams MC, Maher LJ. Mechanical properties of base-modified DNA are not strictly determined by base stacking or electrostatic interactions. Biophysical Journal. 107: 448-59. PMID 25028886 DOI: 10.1016/J.Bpj.2014.04.066 |
0.636 |
|
| 2014 |
Stellwagen NC, Peters JP, Dong Q, Maher LJ, Stellwagen E. The free solution mobility of DNA and other analytes varies as the logarithm of the fractional negative charge. Electrophoresis. 35: 1855-63. PMID 24648187 DOI: 10.1002/Elps.201400040 |
0.548 |
|
| 2014 |
Becker NA, Greiner AM, Peters JP, Maher LJ. Bacterial promoter repression by DNA looping without protein-protein binding competition. Nucleic Acids Research. 42: 5495-504. PMID 24598256 DOI: 10.1093/Nar/Gku180 |
0.667 |
|
| 2014 |
McCauley MJ, Huo R, Becker N, Nelson Holt M, Muthurajan U, Luger K, Maher LJ, Israeloff N, Williams MC. The Yeast HMG Protein HMO1 Alters Nucleosome Structure Biophysical Journal. 106: 74a-75a. DOI: 10.1016/J.Bpj.2013.11.489 |
0.313 |
|
| 2014 |
Becker NA, Peters JP, Maher LJ. Promoter Repression by Strong DNA Bending Biophysical Journal. 106: 68a. DOI: 10.1016/J.Bpj.2013.11.453 |
0.655 |
|
| 2013 |
Stellwagen E, Peters JP, Maher LJ, Stellwagen NC. DNA A-tracts are not curved in solutions containing high concentrations of monovalent cations. Biochemistry. 52: 4138-48. PMID 23675817 DOI: 10.1021/Bi400118M |
0.574 |
|
| 2013 |
Bancos I, Bida JP, Tian D, Bundrick M, John K, Holte MN, Her YF, Evans D, Saenz DT, Poeschla EM, Hook D, Georg G, Maher LJ. High-throughput screening for growth inhibitors using a yeast model of familial paraganglioma. Plos One. 8: e56827. PMID 23451094 DOI: 10.1371/Journal.Pone.0056827 |
0.664 |
|
| 2013 |
Coats JE, Lin Y, Rueter E, Maher LJ, Rasnik I. Single-molecule FRET analysis of DNA binding and bending by yeast HMGB protein Nhp6A. Nucleic Acids Research. 41: 1372-81. PMID 23221634 DOI: 10.1093/nar/gks1208 |
0.447 |
|
| 2013 |
McCauley MJ, Rueter EM, Rouzina I, Maher LJ, Williams MC. Single-molecule kinetics reveal microscopic mechanism by which High-Mobility Group B proteins alter DNA flexibility. Nucleic Acids Research. 41: 167-81. PMID 23143110 DOI: 10.1093/nar/gks1031 |
0.44 |
|
| 2013 |
Becker NA, Peters JP, Maher LJ, Lionberger TA. Mechanism of promoter repression by Lac repressor-DNA loops. Nucleic Acids Research. 41: 156-66. PMID 23143103 DOI: 10.1093/Nar/Gks1011 |
0.633 |
|
| 2013 |
Swint-Kruse L, Tungtur S, Zhan H, Becker NA, Maher LJ, Riepe J. In Vitro Thermodynamics of DNA Binding Correlate with In Vivo Transcription Repression by a Synthetic Laci/Galr Paralog Biophysical Journal. 104: 576a. DOI: 10.1016/J.Bpj.2012.11.3198 |
0.329 |
|
| 2012 |
Bida JP, Maher LJ. Improved prediction of RNA tertiary structure with insights into native state dynamics. Rna (New York, N.Y.). 18: 385-93. PMID 22279150 DOI: 10.1261/rna.027201.111 |
0.676 |
|
| 2012 |
Zhang J, McCauley MJ, Maher LJ, Williams MC, Israeloff NE. Basic N-terminus of yeast Nhp6A regulates the mechanism of its DNA flexibility enhancement. Journal of Molecular Biology. 416: 10-20. PMID 22197373 DOI: 10.1016/j.jmb.2011.12.004 |
0.381 |
|
| 2012 |
Becker NA, Peters J, Maher LJ. Measuring DNA Bending and Twisting Flexibility in E. Coli Biophysical Journal. 102: 15a. DOI: 10.1016/J.Bpj.2011.11.104 |
0.651 |
|
| 2011 |
Czapla L, Peters JP, Rueter EM, Olson WK, Maher LJ. Understanding apparent DNA flexibility enhancement by HU and HMGB architectural proteins. Journal of Molecular Biology. 409: 278-89. PMID 21459097 DOI: 10.1016/J.Jmb.2011.03.050 |
0.64 |
|
| 2011 |
Peters JP, Becker NA, Rueter EM, Bajzer Z, Kahn JD, Maher LJ. Quantitative methods for measuring DNA flexibility in vitro and in vivo. Methods in Enzymology. 488: 287-335. PMID 21195233 DOI: 10.1016/B978-0-12-381268-1.00012-4 |
0.653 |
|
| 2010 |
Bond LM, Peters JP, Becker NA, Kahn JD, Maher LJ. Gene repression by minimal lac loops in vivo. Nucleic Acids Research. 38: 8072-82. PMID 21149272 DOI: 10.1093/Nar/Gkq755 |
0.66 |
|
| 2010 |
Peters JP, Maher LJ. DNA curvature and flexibility in vitro and in vivo. Quarterly Reviews of Biophysics. 43: 23-63. PMID 20478077 DOI: 10.1017/S0033583510000077 |
0.637 |
|
| 2009 |
Wurster SE, Bida JP, Her YF, Maher LJ. Characterization of anti-NF-kappaB RNA aptamer-binding specificity in vitro and in the yeast three-hybrid system. Nucleic Acids Research. 37: 6214-24. PMID 19696077 DOI: 10.1093/nar/gkp670 |
0.694 |
|
| 2009 |
Sebastian NT, Bystry EM, Becker NA, Maher LJ. Enhancement of DNA flexibility in vitro and in vivo by HMGB box A proteins carrying box B residues. Biochemistry. 48: 2125-34. PMID 19236006 DOI: 10.1021/bi802269f |
0.424 |
|
| 2009 |
Zhang J, McCauley MJ, Maher LJ, Williams MC, Israeloff NE. Mechanism of DNA flexibility enhancement by HMGB proteins. Nucleic Acids Research. 37: 1107-14. PMID 19129233 DOI: 10.1093/nar/gkn1011 |
0.411 |
|
| 2009 |
McCauley MJ, Zimmerman J, Maher LJ, Williams MC. Corrigendum to "HMGB Binding to DNA: Single and Double Box Motifs" [J. Mol. Biol. 374 (2007) 993-1004] (DOI:10.1016/j.jmb.2007.09.073) Journal of Molecular Biology. 387: 520. DOI: 10.1016/j.jmb.2009.01.001 |
0.368 |
|
| 2009 |
Lin Y, Hardwidge P, Bystry E, Maher LJ, Rasnik I. Single Molecule FRET Studies of Binding and Conformational Dynamics of HMGB -DNA Systems Biophysical Journal. 96: 366a-367a. DOI: 10.1016/J.Bpj.2008.12.1974 |
0.395 |
|
| 2008 |
Guo Z, Taubes CH, Oh JE, Maher LJ, Mohanty U. DNA on a tube: electrostatic contribution to stiffness. The Journal of Physical Chemistry. B. 112: 16163-9. PMID 19053713 DOI: 10.1021/Jp806260H |
0.39 |
|
| 2008 |
Becker NA, Kahn JD, Maher LJ. Eukaryotic HMGB proteins as replacements for HU in E. coli repression loop formation. Nucleic Acids Research. 36: 4009-21. PMID 18515834 DOI: 10.1093/Nar/Gkn353 |
0.419 |
|
| 2008 |
Zimmerman J, Maher LJ. Transient HMGB protein interactions with B-DNA duplexes and complexes. Biochemical and Biophysical Research Communications. 371: 79-84. PMID 18413230 DOI: 10.1016/j.bbrc.2008.04.024 |
0.416 |
|
| 2008 |
Reiter NJ, Maher LJ, Butcher SE. DNA mimicry by a high-affinity anti-NF-kappaB RNA aptamer. Nucleic Acids Research. 36: 1227-36. PMID 18160411 DOI: 10.1093/nar/gkm1141 |
0.323 |
|
| 2008 |
Nastasijevic B, Becker NA, Wurster SE, Maher LJ. Sequence-specific binding of DNA and RNA to immobilized Nickel ions. Biochemical and Biophysical Research Communications. 366: 420-5. PMID 18068116 DOI: 10.1016/j.bbrc.2007.11.169 |
0.361 |
|
| 2007 |
McCauley MJ, Zimmerman J, Maher LJ, Williams MC. HMGB binding to DNA: single and double box motifs. Journal of Molecular Biology. 374: 993-1004. PMID 17964600 DOI: 10.1016/j.jmb.2007.09.073 |
0.414 |
|
| 2007 |
Becker NA, Kahn JD, Maher LJ. Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli. Nucleic Acids Research. 35: 3988-4000. PMID 17553830 DOI: 10.1093/Nar/Gkm419 |
0.457 |
|
| 2007 |
McDonald RJ, Dragan AI, Kirk WR, Neff KL, Privalov PL, Maher LJ. DNA bending by charged peptides: electrophoretic and spectroscopic analyses. Biochemistry. 46: 2306-16. PMID 17279773 DOI: 10.1021/Bi061921A |
0.385 |
|
| 2007 |
McCauley M, Hardwidge PR, Maher LJ, Williams MC. DNA binding proteins that alter nucleic acid flexibility Proceedings of Spie - the International Society For Optical Engineering. 6644. DOI: 10.1117/12.736306 |
0.392 |
|
| 2006 |
Maher LJ. DNA Kinks Available...If Needed Structure. 14: 1479-1480. PMID 17027496 DOI: 10.1016/j.str.2006.09.001 |
0.332 |
|
| 2006 |
McDonald RJ, Kahn JD, Maher LJ. DNA bending by bHLH charge variants. Nucleic Acids Research. 34: 4846-56. PMID 16973898 DOI: 10.1093/Nar/Gkl552 |
0.374 |
|
| 2005 |
Maher LJ. Indirect detection of DNA damage Chemistry and Biology. 12: 862-864. PMID 16125096 DOI: 10.1016/j.chembiol.2005.08.002 |
0.333 |
|
| 2005 |
Becker NA, Kahn JD, Maher LJ. Bacterial repression loops require enhanced DNA flexibility. Journal of Molecular Biology. 349: 716-30. PMID 15893770 DOI: 10.1016/J.Jmb.2005.04.035 |
0.446 |
|
| 2005 |
McCauley M, Hardwidge PR, Maher LJ, Williams MC. Dual binding modes for an HMG domain from human HMGB2 on DNA. Biophysical Journal. 89: 353-64. PMID 15833996 DOI: 10.1529/biophysj.104.052068 |
0.389 |
|
| 2005 |
Range K, Mayaan E, Maher LJ, York DM. The contribution of phosphate-phosphate repulsions to the free energy of DNA bending. Nucleic Acids Research. 33: 1257-68. PMID 15741179 DOI: 10.1093/Nar/Gki272 |
0.367 |
|
| 2005 |
Becker NA, Kahn JD, Maher LJ. Corrigendum to “Bacterial Repression Loops Require Enhanced DNA Flexibility” [J. Mol. Biol. (2005) 349, 716–730] Journal of Molecular Biology. 353: 924-926. DOI: 10.1016/J.Jmb.2005.09.005 |
0.382 |
|
| 2003 |
Zimmerman JM, Maher LJ. Solution measurement of DNA curvature in papillomavirus E2 binding sites. Nucleic Acids Research. 31: 5134-9. PMID 12930964 DOI: 10.1093/nar/gkg697 |
0.359 |
|
| 2003 |
Huang DB, Vu D, Cassiday LA, Zimmerman JM, Maher LJ, Ghosh G. Crystal structure of NF-kappaB (p50)2 complexed to a high-affinity RNA aptamer. Proceedings of the National Academy of Sciences of the United States of America. 100: 9268-73. PMID 12886018 DOI: 10.1073/Pnas.1632011100 |
0.301 |
|
| 2003 |
Hardwidge PR, Parkhurst KM, Parkhurst LJ, Maher LJ. Reflections on apparent DNA bending by charge variants of bZIP proteins. Biopolymers. 69: 110-7. PMID 12717726 DOI: 10.1002/Bip.10321 |
0.395 |
|
| 2002 |
Cassiday LA, Maher LJ. Having it both ways: Transcription factors that bind DNA and RNA Nucleic Acids Research. 30: 4118-4126. PMID 12364590 |
0.391 |
|
| 2002 |
Cassiday LA, Lebruska LL, Benson LM, Naylor S, Owen WG, Maher LJ. Binding stoichiometry of an RNA aptamer and its transcription factor target. Analytical Biochemistry. 306: 290-7. PMID 12123668 DOI: 10.1006/abio.2002.5710 |
0.374 |
|
| 2002 |
Hardwidge PR, Kahn JD, Maher LJ. Dominant effect of protein charge rather than protein shape in apparent DNA bending by engineered bZIP domains. Biochemistry. 41: 8277-88. PMID 12081476 DOI: 10.1021/Bi020185H |
0.387 |
|
| 2002 |
Hardwidge PR, Wu J, Williams SL, Parkhurst KM, Parkhurst LJ, Maher LJ. DNA bending by bZIP charge variants: a unified study using electrophoretic phasing and fluorescence resonance energy transfer. Biochemistry. 41: 7732-42. PMID 12056905 DOI: 10.1021/Bi020213W |
0.376 |
|
| 2002 |
Hardwidge PR, Zimmerman JM, Maher LJ. Charge neutralization and DNA bending by the Escherichia coli catabolite activator protein. Nucleic Acids Research. 30: 1879-85. PMID 11972323 |
0.442 |
|
| 2001 |
Hardwidge PR, Lee DK, Prakash TP, Iglesias B, Den RB, Switzer C, Maher LJ. DNA bending by asymmetrically tethered cations: influence of tether flexibility. Chemistry & Biology. 8: 967-80. PMID 11590021 DOI: 10.1016/S1074-5521(01)00065-5 |
0.378 |
|
| 2001 |
Ross ED, Hardwidge PR, Maher LJ. HMG proteins and DNA flexibility in transcription activation Molecular and Cellular Biology. 21: 6598-6605. PMID 11533247 DOI: 10.1128/MCB.21.19.6598-6605.2001 |
0.424 |
|
| 2001 |
Hardwidge PR, Maher LJ. Experimental evaluation of the Liu-Beveridge dinucleotide step model of DNA structure Nucleic Acids Research. 29: 2619-2625. PMID 11410671 |
0.318 |
|
| 2001 |
Cassiday LA, Maher LJ. In vivo recognition of an RNA aptamer by its transcription factor target Biochemistry. 40: 2433-2438. PMID 11327864 DOI: 10.1021/bi002376v |
0.319 |
|
| 2000 |
Hardwidge PR, Zimmerman JM, Maher LJ. Design and calibration of a semi-synthetic DNA phasing assay. Nucleic Acids Research. 28: E102. PMID 11095698 |
0.43 |
|
| 2000 |
Hardwidge PR, Den RB, Ross ED, Maher LJ. Relating independent measures of DNA curvature: Electrophoretic anomaly and cyclization efficiency Journal of Biomolecular Structure and Dynamics. 18: 219-220. PMID 11089643 |
0.414 |
|
| 2000 |
Hoyne PR, Edwards LM, Viari A, Maher LJ. Searching genomes for sequences with the potential to form intrastrand triple helices Journal of Molecular Biology. 302: 797-809. PMID 10993724 DOI: 10.1006/jmbi.2000.4502 |
0.346 |
|
| 2000 |
Williams LD, Maher LJ. Electrostatic mechanisms of DNA deformation. Annual Review of Biophysics and Biomolecular Structure. 29: 497-521. PMID 10940257 DOI: 10.1146/Annurev.Biophys.29.1.497 |
0.426 |
|
| 2000 |
Becker NA, Kelm RJ, Vrana JA, Getz MJ, Maher LJ. Altered sensitivity to single-strand-specific reagents associated with the genomic vascular smooth muscle α-actin promoter during myofibroblast differentiation Journal of Biological Chemistry. 275: 15384-15391. PMID 10748152 DOI: 10.1074/jbc.M909687199 |
0.3 |
|
| 2000 |
Ross ED, Keating AM, Maher LJ. DNA constraints on transcription activation in vitro Journal of Molecular Biology. 297: 321-334. PMID 10715204 DOI: 10.1006/jmbi.2000.3562 |
0.329 |
|
| 2000 |
Rodrigues Hoyne P, Gacy AM, McMurray CT, Maher LJ. Stabilities of intrastrand pyrimidine motif DNA and RNA triple helices Nucleic Acids Research. 28: 770-775. PMID 10637329 |
0.363 |
|
| 1999 |
Ross ED, Den RB, Hardwidge PR, Maher LJ. Improved quantitation of DNA curvature using ligation ladders Nucleic Acids Research. 27: 4135-4142. PMID 10518603 DOI: 10.1093/nar/27.21.4135 |
0.393 |
|
| 1999 |
Lebruska LL, Maher LJ. Selection and characterization of an RNA decoy for transcription factor NF-κB Biochemistry. 38: 3168-3174. PMID 10074372 DOI: 10.1021/bi982515x |
0.37 |
|
| 1998 |
Maher LJ. Mechanisms of DNA bending Current Opinion in Chemical Biology. 2: 688-694. PMID 9914185 |
0.432 |
|
| 1998 |
Strauss-Soukup JK, D. Rodrigues P, Maher LJ. Effect of base composition on DNA bending by phosphate neutralization Biophysical Chemistry. 72: 297-306. PMID 9691271 DOI: 10.1016/S0301-4622(98)00112-4 |
0.398 |
|
| 1998 |
Tomky LA, Strauss-Soukup JK, Maher LJ. Effects of phosphate neutralization on the shape of the AP-1 transcription factor binding site in duplex DNA Nucleic Acids Research. 26: 2298-2305. PMID 9580678 DOI: 10.1093/nar/26.10.2298 |
0.408 |
|
| 1998 |
Strauss-Soukup JK, Maher LJ. Electrostatic effects in DNA bending by GCN4 mutants Biochemistry. 37: 1060-1066. PMID 9454597 DOI: 10.1021/bi972146p |
0.438 |
|
| 1997 |
Strauss-Soukup JK, Maher LJ. Role of asymmetric phosphate neutralization in DNA bending by PU.1 Journal of Biological Chemistry. 272: 31570-31575. PMID 9395494 DOI: 10.1074/jbc.272.50.31570 |
0.443 |
|
| 1997 |
Strauss-Soukup JK, Maher LJ. DNA bending by GCN4 mutants bearing cationic residues Biochemistry. 36: 10026-10032. PMID 9254597 DOI: 10.1021/bi970215u |
0.438 |
|
| 1997 |
Strauss-Soukup JK, Vaghefi MM, Hogrefe RI, Maher LJ. Effects of neutralization pattern and stereochemistry on DNA bending by methylphosphonate substitutions Biochemistry. 36: 8692-8698. PMID 9220955 DOI: 10.1021/bi9705467 |
0.419 |
|
| 1997 |
Ferber MJ, Maher LJ. Quantitating oligonucleotide affinities for duplex DNA: Footprinting vs electrophoretic mobility shift assays Analytical Biochemistry. 244: 312-320. PMID 9025948 DOI: 10.1006/abio.1996.9901 |
0.323 |
|
| 1996 |
Strauss JK, Prakash TP, Roberts C, Switzer C, Maher LJ. DNA bending by a phantom protein Chemistry and Biology. 3: 571-678. PMID 8807901 DOI: 10.1016/S1074-5521(96)90135-0 |
0.439 |
|
| 1996 |
Strauss JK, Roberts C, Nelson MG, Switzer C, Maher LJ. DNA bending by hexamethylene-tethered ammonium ions Proceedings of the National Academy of Sciences of the United States of America. 93: 9515-9520. PMID 8790362 DOI: 10.1073/Pnas.93.18.9515 |
0.384 |
|
| 1996 |
Nelson KL, Becker NA, Pahwa GS, Hollingsworth MA, Maher LJ. Potential for H-DNA in the human MUC1 mucin gene promoter Journal of Biological Chemistry. 271: 18061-18067. PMID 8663482 DOI: 10.1074/Jbc.271.30.18061 |
0.35 |
|
| 1996 |
Soukup GA, Ellington AD, Maher LJ. Selection of RNAs that bind to duplex DNA at neutral pH Journal of Molecular Biology. 259: 216-228. PMID 8656424 DOI: 10.1006/Jmbi.1996.0314 |
0.394 |
|
| 1996 |
Olivas WM, Maher LJ. Binding of DNA oligonucleotides to sequences in the promoter of the human bcl-2 gene Nucleic Acids Research. 24: 1758-1764. PMID 8649997 DOI: 10.1093/Nar/24.9.1758 |
0.315 |
|
| 1996 |
Maher LJ. Prospects for the therapeutic use of antigene oligonucleotides Cancer Investigation. 14: 66-82. PMID 8597891 |
0.327 |
|
| 1995 |
Mcdonald CD, Maher LJ. Recognition of duplex DNA by RNA polynucleotides Nucleic Acids Research. 23: 500-506. PMID 7533903 DOI: 10.1093/nar/23.3.500 |
0.35 |
|
| 1994 |
Olivas WM, Maher LJ. DNA recognition of alternate strand triple helix formation: Affinities of oligonucleotides for a site in the human p53 gene Biochemistry. 33: 983-991. PMID 8305445 DOI: 10.1021/Bi00170A017 |
0.375 |
|
| 1994 |
Olivas WM, Maher LJ. Analysis of duplex DNA by triple helix formation: Application to detection of a p53 microdeletion Biotechniques. 16: 128-132. PMID 8136126 |
0.36 |
|
| 1994 |
Strauss JK, Maher LJ. DNA bending by asymmetric phosphate neutralization Science. 266: 1829-1834. PMID 7997878 |
0.424 |
|
| 1994 |
McDonald CD, Hollingsworth MA, Maher LJ. Enzymatic and chemical probing of an S1 nuclease-sensitive site upstream from the human CFTR gene Gene. 150: 267-274. PMID 7529740 DOI: 10.1016/0378-1119(94)90436-7 |
0.357 |
|
| 1994 |
Hollingsworth MA, Closken C, Harris A, Mcdonald CD, Pahwa GS, Maher LJ. A nuclear factor that binds purine-rich, single-stranded oligonucleotides derived from S1-sensitive elements upstream of the CFTR gene and the MUC1 gene Nucleic Acids Research. 22: 1138-1146. PMID 7513081 DOI: 10.1093/Nar/22.7.1138 |
0.358 |
|
| 1993 |
Skoog JU, Maher LJ. Repression of bacteriophage promoters by DNA and RNA oligonucleotides. Nucleic Acids Research. 21: 2131-8. PMID 8502553 DOI: 10.1093/nar/21.9.2131 |
0.384 |
|
| 1992 |
Maher LJ, Dervan PB, Wold B. Analysis of promoter-specific repression by triple-helical DNA complexes in a eukaryotic cell-free transcription system. Biochemistry. 31: 70-81. PMID 1731886 DOI: 10.1021/Bi00116A012 |
0.327 |
|
| 1992 |
Maher LJ. Inhibition of T7 RNA polymerase initiation by triple-helical DNA complexes: a model for artificial gene repression. Biochemistry. 31: 7587-94. PMID 1510945 DOI: 10.1021/bi00148a021 |
0.322 |
|
| 1992 |
Maher LJ. DNA triple-helix formation: An approach to artificial gene repressors? Bioessays. 14: 807-815. PMID 1365896 |
0.491 |
|
| 1991 |
Maher LJ, Wold B, Dervan PB. Oligonucleotide-directed DNA triple-helix formation: an approach to artificial repressors? Antisense Research and Development. 1: 277-81. PMID 1821648 DOI: 10.1089/Ard.1991.1.277 |
0.432 |
|
| 1990 |
Maher LJ, Dervan PB, Wold BJ. Kinetic analysis of oligodeoxyribonucleotide-directed triple-helix formation on DNA. Biochemistry. 29: 8820-6. PMID 2271558 DOI: 10.1021/Bi00489A045 |
0.304 |
|
| 1989 |
Maher LJ, Wold B, Dervan PB. Inhibition of DNA binding proteins by oligonucleotide-directed triple helix formation. Science (New York, N.Y.). 245: 725-30. PMID 2549631 DOI: 10.1126/Science.2549631 |
0.401 |
|
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