| Year |
Citation |
Score |
| 2004 |
Ruggiero BL, Topal MD. Triplet repeat expansion generated by DNA slippage is suppressed by human flap endonuclease 1. The Journal of Biological Chemistry. 279: 23088-97. PMID 15037629 DOI: 10.1074/Jbc.M313170200 |
0.532 |
|
| 2003 |
Heidenfelder BL, Topal MD. Effects of sequence on repeat expansion during DNA replication. Nucleic Acids Research. 31: 7159-64. PMID 14654691 DOI: 10.1093/Nar/Gkg920 |
0.801 |
|
| 2003 |
Carrick KL, Topal MD. Amino acid substitutions at position 43 of NaeI endonuclease. Evidence for changes in NaeI structure. The Journal of Biological Chemistry. 278: 9733-9. PMID 12519752 DOI: 10.1074/Jbc.M209192200 |
0.739 |
|
| 2003 |
Heidenfelder BL, Makhov AM, Topal MD. Hairpin formation in Friedreich's ataxia triplet repeat expansion. The Journal of Biological Chemistry. 278: 2425-31. PMID 12441336 DOI: 10.1074/Jbc.M210643200 |
0.798 |
|
| 2001 |
Huai Q, Colandene JD, Topal MD, Ke H. Structure of NaeI-DNA complex reveals dual-mode DNA recognition and complete dimer rearrangement. Nature Structural Biology. 8: 665-9. PMID 11473254 DOI: 10.1038/90366 |
0.54 |
|
| 2000 |
Colandene JD, Topal MD. Evidence for mutations that break communication between the Endo and Topo domains in NaeI endonuclease/topoisomerase. Biochemistry. 39: 13703-7. PMID 11076509 DOI: 10.1021/bi001812a |
0.485 |
|
| 2000 |
Huai Q, Colandene JD, Chen Y, Luo F, Zhao Y, Topal MD, Ke H. Crystal structure of NaeI-an evolutionary bridge between DNA endonuclease and topoisomerase. The Embo Journal. 19: 3110-8. PMID 10856254 DOI: 10.1093/Emboj/19.12.3110 |
0.474 |
|
| 1999 |
Lyons-Darden T, Topal MD. Abasic sites induce triplet-repeat expansion during DNA replication in vitro. The Journal of Biological Chemistry. 274: 25975-8. PMID 10473539 DOI: 10.1074/Jbc.274.37.25975 |
0.739 |
|
| 1999 |
Lyons-Darden T, Topal MD. Effects of temperature, Mg2+ concentration and mismatches on triplet-repeat expansion during DNA replication in vitro. Nucleic Acids Research. 27: 2235-40. PMID 10325409 DOI: 10.1093/Nar/27.11.2235 |
0.738 |
|
| 1998 |
Jo K, Topal MD. Step-wise DNA relaxation and decatenation by NaeI-43K. Nucleic Acids Research. 26: 2380-4. PMID 9580689 DOI: 10.1093/nar/26.10.2380 |
0.371 |
|
| 1998 |
Colandene JD, Topal MD. The domain organization of NaeI endonuclease: separation of binding and catalysis. Proceedings of the National Academy of Sciences of the United States of America. 95: 3531-6. PMID 9520400 DOI: 10.1073/pnas.95.7.3531 |
0.449 |
|
| 1996 |
Jo K, Topal MD. Effects on NaeI-DNA recognition of the leucine to lysine substitution that transforms restriction endonuclease NaeI to a topoisomerase: a model for restriction endonuclease evolution. Nucleic Acids Research. 24: 4171-5. PMID 8932368 DOI: 10.1093/nar/24.21.4171 |
0.552 |
|
| 1996 |
Jo K, Topal MD. Changing a leucine to a lysine residue makes NaeI endonuclease hypersensitive to DNA intercalative drugs. Biochemistry. 35: 10014-8. PMID 8756463 DOI: 10.1021/bi9604542 |
0.444 |
|
| 1995 |
Jo K, Topal MD. DNA topoisomerase and recombinase activities in Nae I restriction endonuclease. Science (New York, N.Y.). 267: 1817-20. PMID 7892605 |
0.544 |
|
| 1995 |
Voigt JM, Topal MD. O6-methylguanine-induced replication blocks. Carcinogenesis. 16: 1775-82. PMID 7634403 DOI: 10.1093/carcin/16.8.1775 |
0.305 |
|
| 1994 |
Yang CC, Baxter BK, Topal MD. DNA cleavage by NaeI: protein purification, rate-limiting step, and accuracy. Biochemistry. 33: 14918-25. PMID 7993918 |
0.483 |
|
| 1994 |
Holtz JK, Topal MD. Location of putative binding and catalytic sites of NaeI by random mutagenesis. The Journal of Biological Chemistry. 269: 27286-90. PMID 7961638 |
0.381 |
|
| 1993 |
Topal MD, Conrad M. Changing endonuclease EcoRII Tyr308 to Phe abolishes cleavage but not recognition: possible homology with the Int-family of recombinases. Nucleic Acids Research. 21: 2599-603. PMID 8392701 DOI: 10.1093/nar/21.11.2599 |
0.436 |
|
| 1993 |
Baxter BK, Topal MD. Formation of a cleavasome: enhancer DNA-2 stabilizes an active conformation of NaeI dimer. Biochemistry. 32: 8291-8. PMID 8347627 |
0.491 |
|
| 1992 |
Conrad M, Topal MD. Modified DNA fragments activate NaeI cleavage of refractory DNA sites. Nucleic Acids Research. 20: 5127-30. PMID 1408827 DOI: 10.1093/nar/20.19.5127 |
0.44 |
|
| 1992 |
Yang CC, Topal MD. Nonidentical DNA-binding sites of endonuclease NaeI recognize different families of sequences flanking the recognition site. Biochemistry. 31: 9657-64. PMID 1390742 |
0.42 |
|
| 1991 |
Oller AR, Vanden Broek W, Conrad M, Topal MD. Ability of DNA and spermidine to affect the activity of restriction endonucleases from several bacterial species. Biochemistry. 30: 2543-9. PMID 1848100 |
0.457 |
|
| 1991 |
Topal MD, Thresher RJ, Conrad M, Griffith J. NaeI endonuclease binding to pBR322 DNA induces looping. Biochemistry. 30: 2006-10. PMID 1847081 DOI: 10.1021/Bi00221A038 |
0.364 |
|
| 1990 |
Voigt JM, Topal MD. O6-methylguanine and A.C and G.T mismatches cause asymmetric structural defects in DNA that are affected by DNA sequence. Biochemistry. 29: 5012-8. PMID 2378864 |
0.453 |
|
| 1990 |
Voigt JM, Topal MD. O6-methylguanine in place of guanine causes asymmetric single-strand cleavage of DNA by some restriction enzymes. Biochemistry. 29: 1632-7. PMID 2159342 |
0.372 |
|
| 1989 |
Conrad M, Topal MD. DNA and spermidine provide a switch mechanism to regulate the activity of restriction enzyme Nae I. Proceedings of the National Academy of Sciences of the United States of America. 86: 9707-11. PMID 2602372 DOI: 10.1073/pnas.86.24.9707 |
0.479 |
|
| 1989 |
Voigt JM, Van Houten B, Sancar A, Topal MD. Repair of O6-methylguanine by ABC excinuclease of Escherichia coli in vitro. The Journal of Biological Chemistry. 264: 5172-6. PMID 2538476 |
0.347 |
|
| 1988 |
Topal MD. DNA repair, oncogenes and carcinogenesis. Carcinogenesis. 9: 691-6. PMID 3284662 DOI: 10.1093/carcin/9.5.691 |
0.496 |
|
| 1988 |
Reid R, Mar EC, Huang ES, Topal MD. Insertion and extension of acyclic, dideoxy, and ara nucleotides by herpesviridae, human alpha and human beta polymerases. A unique inhibition mechanism for 9-(1,3-dihydroxy-2-propoxymethyl)guanine triphosphate. The Journal of Biological Chemistry. 263: 3898-904. PMID 2831212 |
0.41 |
|
| 1987 |
Huff AC, Topal MD. DNA damage at thymine N-3 abolishes base-pairing capacity during DNA synthesis. The Journal of Biological Chemistry. 262: 12843-50. PMID 2442169 |
0.54 |
|
| 1986 |
Conrad M, Topal MD. Induction of deletion and insertion mutations by 9-aminoacridine. An in vitro model. The Journal of Biological Chemistry. 261: 16226-32. PMID 3782116 |
0.442 |
|
| 1986 |
Topal MD, Eadie JS, Conrad M. O6-methylguanine mutation and repair is nonuniform. Selection for DNA most interactive with O6-methylguanine. The Journal of Biological Chemistry. 261: 9879-85. PMID 3525535 |
0.411 |
|
| 1985 |
Topal MD. Mutagenesis by incorporation of alkylated nucleotides. Basic Life Sciences. 31: 339-51. PMID 3888179 |
0.523 |
|
| 1984 |
Toorchen D, Lindamood C, Swenberg JA, Topal MD. O6-Methylguanine-DNA transmethylase converts O6-methylguanine thymine base pairs to guanine thymine base pairs in DNA. Carcinogenesis. 5: 1733-5. PMID 6499126 DOI: 10.1093/Carcin/5.12.1733 |
0.401 |
|
| 1984 |
Topal MD. Molecular mechanisms of chemical mutagenesis: 9-aminoacridine inhibits DNA replication in vitro by destabilizing the DNA growing point and interacting with the DNA polymerase. Biochemistry. 23: 2367-72. PMID 6383465 |
0.532 |
|
| 1984 |
Eadie JS, Conrad M, Toorchen D, Topal MD. Mechanism of mutagenesis by O6-methylguanine. Nature. 308: 201-3. PMID 6322009 DOI: 10.1038/308201a0 |
0.446 |
|
| 1983 |
Toorchen D, Topal MD. Mechanisms of chemical mutagenesis and carcinogenesis: effects on DNA replication of methylation at the O6-guanine position of dGTP. Carcinogenesis. 4: 1591-7. PMID 6360407 DOI: 10.1093/carcin/4.12.1591 |
0.397 |
|
| 1983 |
Topal MD, Sinha NK. Products of bacteriophage T4 genes 32 and 45 improve the accuracy of DNA replication in vitro. The Journal of Biological Chemistry. 258: 12274-9. PMID 6355084 |
0.324 |
|
| 1982 |
Topal MD, Baker MS. DNA precursor pool: a significant target for N-methyl-N-nitrosourea in C3H/10T1/2 clone 8 cells. Proceedings of the National Academy of Sciences of the United States of America. 79: 2211-5. PMID 6954535 |
0.427 |
|
| 1982 |
Cordeiro-Stone M, Topal MD, Kaufman DG. DNA in proximity to the site of replication is preferentially alkylated in S phase 10T1/2 cells treated with N-methyl-N-nitroso-urea. Carcinogenesis. 3: 1119-27. PMID 6293733 DOI: 10.1093/Carcin/3.10.1119 |
0.517 |
|
| 1982 |
Topal MD, Hutchison CA, Baker MS. DNA precursors in chemical mutagenesis: A novel application of DNA sequencing Nature. 298: 863-865. PMID 6287277 DOI: 10.1038/298863A0 |
0.591 |
|
| 1981 |
Baker MS, Topal MD. Cellular DNA precursor triphosphates are targets of N-methyl-N-nitrosourea (MNU) Journal of Supramolecular and Cellular Biochemistry. 15. |
0.379 |
|
| 1981 |
Cordeiro-Stone M, Topal MD, Kaufman DG. The distribution of DNA damage in 10T 1/2 cells treated with N-methyl-N-nitrosourea (MNU) during S phase Journal of Supramolecular and Cellular Biochemistry. 15. |
0.343 |
|
| 1980 |
Topal MD, DiGuiseppi SR, Sinha NK. Molecular basis for substitution mutations. Effect of primer terminal and template residues on nucleotide selection by phage T4 DNA polymerase in vitro. The Journal of Biological Chemistry. 255: 11717-24. PMID 7002928 |
0.556 |
|
| 1976 |
Topal MD, Fresco JR. Complementary base pairing and the origin of substitution mutations. Nature. 263: 285-9. PMID 958482 DOI: 10.1038/263285A0 |
0.401 |
|
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