Jonathan A. Winkle - Related publications

Affiliations: 
Massachusetts Institute of Technology, Cambridge, MA, United States 
Area:
Visual Attention
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Santos AC, Chiola S, Yang G, Shcheglovitov A, Park S. Secreted reporter assay enables quantitative and longitudinal monitoring of neuronal activity. Eneuro. PMID 34531280 DOI: 10.1523/ENEURO.0518-20.2021   
2021 Dori I, Bekiari C, Grivas I, Tsingotjidou A, Papadopoulos GC. Birth and death of neurons in the developing and mature mammalian brain. The International Journal of Developmental Biology. PMID 34549795 DOI: 10.1387/ijdb.210139id   
2021 Hiyoshi K, Shiraishi A, Fukuda N, Tsuda S. In vivo wide-field voltage imaging in zebrafish with voltage-sensitive dye and genetically encoded voltage indicator. Development, Growth & Differentiation. PMID 34411280 DOI: 10.1111/dgd.12744   
2021 Soni A, Klütsch D, Hu X, Houtman J, Rund N, McCloskey A, Mertens J, Schafer ST, Amin H, Toda T. Improved Method for Efficient Generation of Functional Neurons from Murine Neural Progenitor Cells. Cells. 10. PMID 34440662 DOI: 10.3390/cells10081894   
2021 Zhang XM, Yokoyama T, Sakamoto M. Imaging Voltage with Microbial Rhodopsins. Frontiers in Molecular Biosciences. 8: 738829. PMID 34513932 DOI: 10.3389/fmolb.2021.738829   
2021 Patel K, Katz CN, Kalia SK, Popovic MR, Valiante TA. Volitional control of individual neurons in the human brain. Brain : a Journal of Neurology. PMID 34623400 DOI: 10.1093/brain/awab370   
2021 Piette C, Vandecasteele M, Bosch-Bouju C, Goubard V, Paillé V, Cui Y, Mendes A, Perez S, Valtcheva S, Xu H, Pouget P, Venance L. Intracellular Properties of Deep-Layer Pyramidal Neurons in Frontal Eye Field of Macaque Monkeys. Frontiers in Synaptic Neuroscience. 13: 725880. PMID 34621162 DOI: 10.3389/fnsyn.2021.725880   
2021 Bakken TE, van Velthoven CT, Menon V, Hodge RD, Yao Z, Nguyen TN, Graybuck LT, Horwitz GD, Bertagnolli D, Goldy J, Yanny AM, Garren E, Parry S, Casper T, Shehata SI, et al. Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans. Elife. 10. PMID 34473054 DOI: 10.7554/eLife.64875   
2021 Bodin R, Paille V, Oullier T, Durand T, Aubert P, Le Berre-Scoul C, Hulin P, Neunlist M, Cisse M. The ephrin receptor EphB2 regulates the connectivity and activity of enteric neurons. The Journal of Biological Chemistry. 101300. PMID 34648765 DOI: 10.1016/j.jbc.2021.101300   
2021 Tran HT, Lucas MS, Ishikawa T, Shahmoradian SH, Padeste C. A Compartmentalized Neuronal Cell-Culture Platform Compatible With Cryo-Fixation by High-Pressure Freezing for Ultrastructural Imaging. Frontiers in Neuroscience. 15: 726763. PMID 34566569 DOI: 10.3389/fnins.2021.726763   
2021 Tong Z, Kwak E, Aguiar A, Peng B, Pouton CW, Voelcker NH, Haynes JM. Compartmentalized microfluidic chambers enable long-term maintenance and communication between human pluripotent stem cell-derived forebrain and midbrain neurons. Lab On a Chip. PMID 34487130 DOI: 10.1039/d1lc00505g   
2021 Li Q, Shen L. Neuron Segmentation using 3D Wavelet Integrated Encoder-Decoder Network. Bioinformatics (Oxford, England). PMID 34647994 DOI: 10.1093/bioinformatics/btab716   
2021 Halliwell RF, Salmanzadeh H, Coyne L, Cao WS. An Electrophysiological and Pharmacological Study of the Properties of Human iPSC-Derived Neurons for Drug Discovery. Cells. 10. PMID 34440722 DOI: 10.3390/cells10081953   
2021 Tang Y, Wu Q, Gao M, Ryu E, Pei Z, Kissinger ST, Chen Y, Rao AK, Xiang Z, Wang T, Li W, Chen G, Chubykin AA. Restoration of Visual Function and Cortical Connectivity After Ischemic Injury Through NeuroD1-Mediated Gene Therapy. Frontiers in Cell and Developmental Biology. 9: 720078. PMID 34490268 DOI: 10.3389/fcell.2021.720078   
2021 Pérez-Ortega J, Alejandre-García T, Yuste R. Long-term stability of cortical ensembles. Elife. 10. PMID 34328414 DOI: 10.7554/eLife.64449   
2021 Wildenberg GA, Rosen MR, Lundell J, Paukner D, Freedman DJ, Kasthuri N. Primate neuronal connections are sparse in cortex as compared to mouse. Cell Reports. 36: 109709. PMID 34525373 DOI: 10.1016/j.celrep.2021.109709   
2021 Yang L, Tochitsky I, Woolf CJ, Renthal W. Isolation of Nuclei from Mouse Dorsal Root Ganglia for Single-nucleus Genomics. Bio-Protocol. 11: e4102. PMID 34458396 DOI: 10.21769/BioProtoc.4102   
2021 Yang H, Wang H, Guo L, Xu G. Dynamic responses of neurons in different states under magnetic field stimulation. Journal of Computational Neuroscience. PMID 34532810 DOI: 10.1007/s10827-021-00796-3   
2021 Tseng HA, Sherman J, Bortz E, Mohammed A, Gritton HJ, Bensussen S, Tang RP, Zemel D, Szabo T, Han X. Region-specific effects of ultrasound on individual neurons in the awake mammalian brain. Iscience. 24: 102955. PMID 34458703 DOI: 10.1016/j.isci.2021.102955   
2021 Powell SK, O'Shea C, Townsley K, Prytkova I, Dobrindt K, Elahi R, Iskhakova M, Lambert T, Valada A, Liao W, Ho SM, Slesinger PA, Huckins LM, Akbarian S, Brennand KJ. Induction of dopaminergic neurons for neuronal subtype-specific modeling of psychiatric disease risk. Molecular Psychiatry. PMID 34493831 DOI: 10.1038/s41380-021-01273-0   
2021 Zhang Z, Zhou J, Tan P, Pang Y, Rivkin AC, Kirchgessner MA, Williams E, Lee CT, Liu H, Franklin AD, Miyazaki PA, Bartlett A, Aldridge AI, Vu M, Boggeman L, et al. Epigenomic diversity of cortical projection neurons in the mouse brain. Nature. 598: 167-173. PMID 34616065 DOI: 10.1038/s41586-021-03223-w   
2021 Talbot J, Chear S, Phipps A, Pébay A, Hewitt AW, Vickers JC, King AE, Cook AL. Image-Based Quantitation of Kainic Acid-Induced Excitotoxicity as a Model of Neurodegeneration in Human iPSC-Derived Neurons. Methods in Molecular Biology (Clifton, N.J.). PMID 34505266 DOI: 10.1007/7651_2021_421   
2021 Legault EM, Drouin-Ouellet J. Generation of Induced Dopaminergic Neurons from Human Fetal Fibroblasts. Methods in Molecular Biology (Clifton, N.J.). 2352: 97-115. PMID 34324182 DOI: 10.1007/978-1-0716-1601-7_7   
2021 Bao Y, Soltanian-Zadeh S, Farsiu S, Gong Y. Segmentation of Neurons from Fluorescence Calcium Recordings Beyond Real-time. Nature Machine Intelligence. 3: 590-600. PMID 34485824 DOI: 10.1038/s42256-021-00342-x   
2021 Zhu M, Yan Y, Cao X, Zeng F, Xu G, Shen W, Li F, Luo L, Wang Z, Zhang Y, Zhang X, Zhang D, Liu T. Electrophysiological and Morphological Features of Rebound Depolarization Characterized Interneurons in Rat Superficial Spinal Dorsal Horn. Frontiers in Cellular Neuroscience. 15: 736879. PMID 34621158 DOI: 10.3389/fncel.2021.736879   
2021 Li ZX, Geng XY, Wang J, Zhuge F. Emerging Artificial Neuron Devices for Probabilistic Computing. Frontiers in Neuroscience. 15: 717947. PMID 34421528 DOI: 10.3389/fnins.2021.717947   
2021 Takado Y, Takuwa H, Sampei K, Urushihata T, Takahashi M, Shimojo M, Uchida S, Nitta N, Shibata S, Nagashima K, Ochi Y, Ono M, Maeda J, Tomita Y, Sahara N, et al. MRS-measured glutamate versus GABA reflects excitatory versus inhibitory neural activities in awake mice. Journal of Cerebral Blood Flow and Metabolism : Official Journal of the International Society of Cerebral Blood Flow and Metabolism. 271678X211045449. PMID 34515548 DOI: 10.1177/0271678X211045449   
2021 Nagayach A, Ghafari M, Zhao Y, Collins GS, Singh A, Geller AI. Connected neurons in multiple neocortical areas, comprising parallel circuits, encode essential information for visual shape learning. Journal of Chemical Neuroanatomy. 102024. PMID 34492329 DOI: 10.1016/j.jchemneu.2021.102024   
2021 Kalmbach BE, Hodge RD, Jorstad NL, Owen S, de Frates R, Yanny AM, Dalley R, Mallory M, Graybuck LT, Radaelli C, Keene CD, Gwinn RP, Silbergeld DL, Cobbs C, Ojemann JG, et al. Signature morpho-electric, transcriptomic, and dendritic properties of human layer 5 neocortical pyramidal neurons. Neuron. 109: 2914-2927.e5. PMID 34534454 DOI: 10.1016/j.neuron.2021.08.030   
2021 Brant B, Stern T, Shekhidem HA, Mizrahi L, Rosh I, Stern Y, Ofer P, Asleh A, Umanah GKE, Jada R, Levy NS, Levy AP, Stern S. IQSEC2 mutation associated with epilepsy, intellectual disability, and autism results in hyperexcitability of patient-derived neurons and deficient synaptic transmission. Molecular Psychiatry. PMID 34535765 DOI: 10.1038/s41380-021-01281-0   
2021 Roversi K, Ebrahimi Orimi H, Falchetti M, Lummertz da Rocha E, Talbot S, Boutopoulos C. Bioprinting of Adult Dorsal Root Ganglion (DRG) Neurons Using Laser-Induced Side Transfer (LIST). Micromachines. 12. PMID 34442487 DOI: 10.3390/mi12080865   
2021 Berg J, Sorensen SA, Ting JT, Miller JA, Chartrand T, Buchin A, Bakken TE, Budzillo A, Dee N, Ding SL, Gouwens NW, Hodge RD, Kalmbach B, Lee C, Lee BR, et al. Human neocortical expansion involves glutamatergic neuron diversification. Nature. 598: 151-158. PMID 34616067 DOI: 10.1038/s41586-021-03813-8   
2021 Jones-Tabah J, Martin RD, Tanny JC, Clarke PBS, Hebert TE. . Molecular Pharmacology. PMID 34503973 DOI: 10.1124/molpharm.121.000290   
2021 Lindquist KA, Belugin S, Hovhannisyan AH, Corey TM, Salmon A, Akopian AN. Identification of Trigeminal Sensory Neuronal Types Innervating Masseter Muscle. Eneuro. PMID 34580157 DOI: 10.1523/ENEURO.0176-21.2021   
2021 Reis AS, Brugnago EL, Caldas IL, Batista AM, Iarosz KC, Ferrari FAS, Viana RL. Suppression of chaotic bursting synchronization in clustered scale-free networks by an external feedback signal. Chaos (Woodbury, N.Y.). 31: 083128. PMID 34470231 DOI: 10.1063/5.0056672   
2021 Kessler S, Labouèbe G, Croizier S, Gaspari S, Tarussio D, Thorens B. Glucokinase neurons of the paraventricular nucleus of the thalamus sense glucose and decrease food consumption. Iscience. 24: 103122. PMID 34622169 DOI: 10.1016/j.isci.2021.103122   
2021 Liu X, Chen H, Wang Y, Si Y, Zhang H, Li X, Zhang Z, Yan B, Jiang S, Wang F, Weng S, Xu W, Zhao D, Zhang J, Zhang F. Near-infrared manipulation of multiple neuronal populations via trichromatic upconversion. Nature Communications. 12: 5662. PMID 34580314 DOI: 10.1038/s41467-021-25993-7   
2021 Pesce L, Laurino A, Scardigli M, Yang J, Boas DA, Hof PR, Destrieux C, Costantini I, Pavone FS. Exploring the human cerebral cortex using confocal microscopy. Progress in Biophysics and Molecular Biology. PMID 34536443 DOI: 10.1016/j.pbiomolbio.2021.09.001   
2021 Wang J, Teng C, Zhang Z, Chen W, Tan J, Pan Y, Zhang R, Zhou H, Ding B, Cheng HM, Liu B. A Scalable Artificial Neuron Based on Ultrathin Two-Dimensional Titanium Oxide. Acs Nano. PMID 34534433 DOI: 10.1021/acsnano.1c05565   
2021 Niemeyer N, Schleimer JH, Schreiber S. Biophysical models of intrinsic homeostasis: Firing rates and beyond. Current Opinion in Neurobiology. 70: 81-88. PMID 34454303 DOI: 10.1016/j.conb.2021.07.011   
2021 Andrei AR, Debes S, Chelaru M, Liu X, Rodarte E, Spudich JL, Janz R, Dragoi V. Heterogeneous side-effects of cortical inactivation in behaving animals. Elife. 10. PMID 34505577 DOI: 10.7554/eLife.66400   
2021 Cooper JF, Guasp RJ, Arnold ML, Grant BD, Driscoll M. Stress increases in exopher-mediated neuronal extrusion require lipid biosynthesis, FGF, and EGF RAS/MAPK signaling. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34475208 DOI: 10.1073/pnas.2101410118   
2021 Matho KS, Huilgol D, Galbavy W, He M, Kim G, An X, Lu J, Wu P, Di Bella DJ, Shetty AS, Palaniswamy R, Hatfield J, Raudales R, Narasimhan A, Gamache E, et al. Genetic dissection of the glutamatergic neuron system in cerebral cortex. Nature. 598: 182-187. PMID 34616069 DOI: 10.1038/s41586-021-03955-9   
2021 Sadegh C, Ebina W, Arvanites AC, Davidow LS, Rubin LL, Macklis JD. Synthetic modified Fezf2 mRNA (modRNA) with concurrent small molecule SIRT1 inhibition enhances refinement of cortical subcerebral/corticospinal neuron identity from mouse embryonic stem cells. Plos One. 16: e0254113. PMID 34473715 DOI: 10.1371/journal.pone.0254113   
2021 Athey TL, Teneggi J, Vogelstein JT, Tward DJ, Mueller U, Miller MI. Fitting Splines to Axonal Arbors Quantifies Relationship Between Branch Order and Geometry. Frontiers in Neuroinformatics. 15: 704627. PMID 34456702 DOI: 10.3389/fninf.2021.704627   
2021 Ye L, Ji H, Liu J, Tu CH, Kappl M, Koynov K, Vogt J, Butt HJ. Carbon Nanotube-Hydrogel Composites Facilitate Neuronal Differentiation While Maintaining Homeostasis of Network Activity. Advanced Materials (Deerfield Beach, Fla.). e2102981. PMID 34453367 DOI: 10.1002/adma.202102981   
2021 Munguba H, Chattopadhyaya B, Nilsson S, Carriço JN, Memic F, Oberst P, Batista-Brito R, Munoz-Manchado AB, Wegner M, Fishell G, Di Cristo G, Hjerling-Leffler J. Postnatal Sox6 regulates synaptic function of cortical parvalbumin-expressing neurons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 34503995 DOI: 10.1523/JNEUROSCI.0021-21.2021   
2021 Chopek JW, Zhang Y, Brownstone RM. Intrinsic brainstem circuits comprised of Chx10-expressing neurons contribute to reticulospinal output in mice. Journal of Neurophysiology. PMID 34669520 DOI: 10.1152/jn.00322.2021   
2021 Susoy V, Hung W, Witvliet D, Whitener JE, Wu M, Park CF, Graham BJ, Zhen M, Venkatachalam V, Samuel ADT. Natural sensory context drives diverse brain-wide activity during C. elegans mating. Cell. PMID 34534446 DOI: 10.1016/j.cell.2021.08.024   
2021 Wei HH, Yuan XS, Chen ZK, Chen PP, Xiang Z, Qu WM, Li RX, Zhou GM, Huang ZL. Presynaptic inputs to vasopressin neurons in the hypothalamic supraoptic nucleus and paraventricular nucleus in mice. Experimental Neurology. 343: 113784. PMID 34139240 DOI: 10.1016/j.expneurol.2021.113784