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Matthew T. Kaufman - Publications

Affiliations: 
2005-2012 Neuroscience Stanford University, Palo Alto, CA 
 2012- Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 
Area:
Decision making, motor control, dynamical systems, interneurons
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Sabatini DA, Kaufman MT. Reach-dependent reorientation of rotational dynamics in motor cortex. Nature Communications. 15: 7007. PMID 39143078 DOI: 10.1038/s41467-024-51308-7  0.416
2023 Shelchkova ND, Downey JE, Greenspon CM, Okorokova EV, Sobinov AR, Verbaarschot C, He Q, Sponheim C, Tortolani AF, Moore DD, Kaufman MT, Lee RC, Satzer D, Gonzalez-Martinez J, Warnke PC, et al. Microstimulation of human somatosensory cortex evokes task-dependent, spatially patterned responses in motor cortex. Nature Communications. 14: 7270. PMID 37949923 DOI: 10.1038/s41467-023-43140-2  0.31
2022 Zhu F, Grier HA, Tandon R, Cai C, Agarwal A, Giovannucci A, Kaufman MT, Pandarinath C. A deep learning framework for inference of single-trial neural population dynamics from calcium imaging with subframe temporal resolution. Nature Neuroscience. PMID 36424431 DOI: 10.1038/s41593-022-01189-0  0.674
2022 Kaufman MT, Benna MK, Rigotti M, Stefanini F, Fusi S, Churchland AK. The implications of categorical and category-free mixed selectivity on representational geometries. Current Opinion in Neurobiology. 77: 102644. PMID 36332415 DOI: 10.1016/j.conb.2022.102644  0.653
2020 Huang L, Kebschull JM, Fürth D, Musall S, Kaufman MT, Churchland AK, Zador AM. BRICseq Bridges Brain-wide Interregional Connectivity to Neural Activity and Gene Expression in Single Animals. Cell. 183: 2040. PMID 33357401 DOI: 10.1016/j.cell.2020.12.009  0.649
2020 Suresh AK, Goodman JM, Okorokova EV, Kaufman M, Hatsopoulos NG, Bensmaia SJ. Neural population dynamics in motor cortex are different for reach and grasp. Elife. 9. PMID 33200745 DOI: 10.7554/eLife.58848  0.406
2020 Huang L, Kebschull JM, Fürth D, Musall S, Kaufman MT, Churchland AK, Zador AM. BRICseq Bridges Brain-wide Interregional Connectivity to Neural Activity and Gene Expression in Single Animals. Cell. PMID 32619423 DOI: 10.1016/J.Cell.2020.05.029  0.664
2019 O'Shea DJ, Kalanithi P, Ferenczi EA, Hsueh B, Chandrasekaran C, Goo W, Diester I, Ramakrishnan C, Kaufman MT, Ryu SI, Yeom KW, Deisseroth K, Shenoy KV. Publisher Correction: Development of an optogenetic toolkit for neural circuit dissection in squirrel monkeys. Scientific Reports. 9: 18775. PMID 31801956 DOI: 10.1038/S41598-019-55025-W  0.748
2019 Musall S, Kaufman MT, Juavinett AL, Gluf S, Churchland AK. Single-trial neural dynamics are dominated by richly varied movements. Nature Neuroscience. 22: 1677-1686. PMID 31551604 DOI: 10.1038/S41593-019-0502-4  0.811
2019 Trautmann EM, Stavisky SD, Lahiri S, Ames KC, Kaufman MT, O'Shea DJ, Vyas S, Sun X, Ryu SI, Ganguli S, Shenoy KV. Accurate Estimation of Neural Population Dynamics without Spike Sorting. Neuron. PMID 31171448 DOI: 10.1016/J.Neuron.2019.05.003  0.804
2018 Kaufman MT. Adapting Fine with a Little Help from the Null Space. Neuron. 100: 771-773. PMID 30465761 DOI: 10.1016/J.Neuron.2018.11.007  0.382
2018 Pandarinath C, O'Shea DJ, Collins J, Jozefowicz R, Stavisky SD, Kao JC, Trautmann EM, Kaufman MT, Ryu SI, Hochberg LR, Henderson JM, Shenoy KV, Abbott LF, Sussillo D. Inferring single-trial neural population dynamics using sequential auto-encoders. Nature Methods. PMID 30224673 DOI: 10.1038/S41592-018-0109-9  0.77
2018 O'Shea DJ, Kalanithi P, Ferenczi EA, Hsueh B, Chandrasekaran C, Goo W, Diester I, Ramakrishnan C, Kaufman MT, Ryu SI, Yeom KW, Deisseroth K, Shenoy KV. Development of an optogenetic toolkit for neural circuit dissection in squirrel monkeys. Scientific Reports. 8: 6775. PMID 29712920 DOI: 10.1038/S41598-018-24362-7  0.781
2017 Omrani M, Kaufman MT, Hatsopoulos NG, Cheney PD. Perspectives on classical controversies about the motor cortex. Journal of Neurophysiology. jn.00795.2016. PMID 28615340 DOI: 10.1152/Jn.00795.2016  0.459
2017 Licata AM, Kaufman MT, Raposo D, Ryan MB, Sheppard JP, Churchland AK. Posterior parietal cortex guides visual decisions in rats. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 28408414 DOI: 10.1523/Jneurosci.0105-17.2017  0.744
2016 Kaufman MT, Churchland AK. Many paths from state to state. Nature Neuroscience. 19: 1541-1542. PMID 27898087 DOI: 10.1038/Nn.4440  0.678
2016 Seely JS, Kaufman MT, Ryu SI, Shenoy KV, Cunningham JP, Churchland MM. Tensor Analysis Reveals Distinct Population Structure that Parallels the Different Computational Roles of Areas M1 and V1. Plos Computational Biology. 12: e1005164. PMID 27814353 DOI: 10.1371/Journal.Pcbi.1005164  0.788
2016 Elsayed GF, Lara AH, Kaufman MT, Churchland MM, Cunningham JP. Reorganization between preparatory and movement population responses in motor cortex. Nature Communications. 7: 13239. PMID 27807345 DOI: 10.1038/Ncomms13239  0.826
2016 Kaufman MT, Seely JS, Sussillo D, Ryu SI, Shenoy KV, Churchland MM. The Largest Response Component in the Motor Cortex Reflects Movement Timing but Not Movement Type. Eneuro. 3. PMID 27761519 DOI: 10.1523/ENEURO.0085-16.2016  0.806
2015 Sussillo D, Churchland MM, Kaufman MT, Shenoy KV. A neural network that finds a naturalistic solution for the production of muscle activity. Nature Neuroscience. 18: 1025-33. PMID 26075643 DOI: 10.1038/Nn.4042  0.81
2015 Kaufman MT, Churchland MM, Ryu SI, Shenoy KV. Vacillation, indecision and hesitation in moment-by-moment decoding of monkey motor cortex. Elife. 4: e04677. PMID 25942352 DOI: 10.7554/Elife.04677  0.819
2015 Kaufman MT, Churchland MM, Ryu SI, Shenoy KV. Author response: Vacillation, indecision and hesitation in moment-by-moment decoding of monkey motor cortex Elife. DOI: 10.7554/Elife.04677.026  0.798
2014 Raposo D, Kaufman MT, Churchland AK. A category-free neural population supports evolving demands during decision-making. Nature Neuroscience. 17: 1784-92. PMID 25383902 DOI: 10.1038/Nn.3865  0.713
2014 Kaufman MT, Churchland MM, Ryu SI, Shenoy KV. Cortical activity in the null space: permitting preparation without movement. Nature Neuroscience. 17: 440-8. PMID 24487233 DOI: 10.1038/Nn.3643  0.826
2013 Cowley BR, Kaufman MT, Butler ZS, Churchland MM, Ryu SI, Shenoy KV, Yu BM. DataHigh: graphical user interface for visualizing and interacting with high-dimensional neural activity. Journal of Neural Engineering. 10: 066012. PMID 24216250 DOI: 10.1088/1741-2560/10/6/066012  0.788
2013 Kaufman MT, Churchland MM, Shenoy KV. The roles of monkey M1 neuron classes in movement preparation and execution. Journal of Neurophysiology. 110: 817-25. PMID 23699057 DOI: 10.1152/Jn.00892.2011  0.822
2013 Kaufman MT, Churchland AK. Cognitive neuroscience: sensory noise drives bad decisions. Nature. 496: 172-3. PMID 23579673 DOI: 10.1038/496172A  0.615
2012 Cowley BR, Kaufman MT, Churchland MM, Ryu SI, Shenoy KV, Yu BM. DataHigh: graphical user interface for visualizing and interacting with high-dimensional neural activity. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2012: 4607-10. PMID 23366954 DOI: 10.1109/EMBC.2012.6346993  0.792
2012 Gilja V, Nuyujukian P, Chestek CA, Cunningham JP, Yu BM, Fan JM, Churchland MM, Kaufman MT, Kao JC, Ryu SI, Shenoy KV. A high-performance neural prosthesis enabled by control algorithm design. Nature Neuroscience. 15: 1752-7. PMID 23160043 DOI: 10.1038/Nn.3265  0.759
2012 Churchland MM, Cunningham JP, Kaufman MT, Foster JD, Nuyujukian P, Ryu SI, Shenoy KV. Neural population dynamics during reaching. Nature. 487: 51-6. PMID 22722855 DOI: 10.1038/Nature11129  0.82
2011 Chestek CA, Gilja V, Nuyujukian P, Foster JD, Fan JM, Kaufman MT, Churchland MM, Rivera-Alvidrez Z, Cunningham JP, Ryu SI, Shenoy KV. Long-term stability of neural prosthetic control signals from silicon cortical arrays in rhesus macaque motor cortex. Journal of Neural Engineering. 8: 045005. PMID 21775782 DOI: 10.1088/1741-2560/8/4/045005  0.744
2011 Shenoy KV, Kaufman MT, Sahani M, Churchland MM. A dynamical systems view of motor preparation: implications for neural prosthetic system design. Progress in Brain Research. 192: 33-58. PMID 21763517 DOI: 10.1016/B978-0-444-53355-5.00003-8  0.826
2011 Diester I, Kaufman MT, Mogri M, Pashaie R, Goo W, Yizhar O, Ramakrishnan C, Deisseroth K, Shenoy KV. An optogenetic toolbox designed for primates. Nature Neuroscience. 14: 387-97. PMID 21278729 DOI: 10.1038/Nn.2749  0.767
2010 Churchland MM, Cunningham JP, Kaufman MT, Ryu SI, Shenoy KV. Cortical preparatory activity: representation of movement or first cog in a dynamical machine? Neuron. 68: 387-400. PMID 21040842 DOI: 10.1016/J.Neuron.2010.09.015  0.808
2010 Kaufman MT, Churchland MM, Santhanam G, Yu BM, Afshar A, Ryu SI, Shenoy KV. Roles of monkey premotor neuron classes in movement preparation and execution. Journal of Neurophysiology. 104: 799-810. PMID 20538784 DOI: 10.1152/Jn.00231.2009  0.799
2005 Knutson B, Taylor J, Kaufman M, Peterson R, Glover G. Distributed neural representation of expected value. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 25: 4806-12. PMID 15888656 DOI: 10.1523/Jneurosci.0642-05.2005  0.368
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