| Year |
Citation |
Score |
| 2021 |
Eisenhaber B, Sinha S, Jadalanki CK, Shitov VA, Tan QW, Sirota FL, Eisenhaber F. Conserved sequence motifs in human TMTC1, TMTC2, TMTC3, and TMTC4, new O-mannosyltransferases from the GT-C/PMT clan, are rationalized as ligand binding sites. Biology Direct. 16: 4. PMID 33436046 DOI: 10.1186/s13062-021-00291-w |
0.32 |
|
| 2019 |
Toh YK, Shin J, Balakrishna AM, Neelagandan K, Grüber A, Eisenhaber F, Eisenhaber B, Grüber G. Effect of the additional cysteine 503 of vancomycin-resistant Enterococcus faecalis (V583) alkylhydroperoxide reductase subunit F (AhpF) and the mechanism of AhpF and subunit C assembling. Free Radical Biology & Medicine. PMID 31047989 DOI: 10.1016/J.Freeradbiomed.2019.04.036 |
0.331 |
|
| 2019 |
Maurer-Stroh S, Krutz NL, Kern PS, Gunalan V, Nguyen MN, Limviphuvadh V, Eisenhaber F, Gerberick GF. AllerCatPro - Prediction of protein allergenicity potential from the protein sequence. Bioinformatics (Oxford, England). PMID 30657872 DOI: 10.1093/Bioinformatics/Btz029 |
0.392 |
|
| 2019 |
Eisenhaber B, Eisenhaber F. Darkness in the human gene and protein function space despite big omics data and decline in molecular mechanism discovery after 2000 Acta Crystallographica Section A. 75. DOI: 10.1107/S2053273319093756 |
0.307 |
|
| 2018 |
Sinha S, Eisenhaber B, Jensen LJ, Kalbuaji B, Eisenhaber F. Darkness in the Human Gene and Protein Function Space: Widely Modest or Absent Illumination by the Life Science Literature and the Trend for Fewer Protein Function Discoveries Since 2000. Proteomics. e1800093. PMID 30265449 DOI: 10.1002/Pmic.201800093 |
0.353 |
|
| 2018 |
Eisenhaber B, Sinha S, Wong WC, Eisenhaber F. Function of a membrane-embedded domain evolutionarily multiplied in the GPI lipid anchor pathway proteins PIG-B, PIG-M, PIG-U, PIG-W, PIG-V, and PIG-Z. Cell Cycle (Georgetown, Tex.). 1-7. PMID 29764287 DOI: 10.1080/15384101.2018.1456294 |
0.41 |
|
| 2018 |
Kamariah N, Eisenhaber B, Eisenhaber F, Grüber G. Active site C-loop dynamics modulate substrate binding, catalysis, oligomerization, stability, over-oxidation and recycling of 2-Cys Peroxiredoxins. Free Radical Biology & Medicine. PMID 29474868 DOI: 10.1016/J.Freeradbiomed.2018.02.027 |
0.326 |
|
| 2017 |
Toh YK, Balakrishna AM, Manimekalai MSS, Chionh BB, Seetharaman RRC, Eisenhaber F, Eisenhaber B, Grüber G. Novel insights into the vancomycin-resistant Enterococcus faecalis (V583) alkylhydroperoxide reductase subunit F. Biochimica Et Biophysica Acta. PMID 28935609 DOI: 10.1016/J.Bbagen.2017.09.011 |
0.358 |
|
| 2017 |
Marakasova ES, Eisenhaber B, Maurer-Stroh S, Eisenhaber F, Baranova A. Prenylation of viral proteins by enzymes of the host: Virus-driven rationale for therapy with statins and FT/GGT1 inhibitors. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 28885709 DOI: 10.1002/Bies.201700014 |
0.331 |
|
| 2017 |
Baker JA, Wong WC, Eisenhaber B, Warwicker J, Eisenhaber F. Charged residues next to transmembrane regions revisited: "Positive-inside rule" is complemented by the "negative inside depletion/outside enrichment rule". Bmc Biology. 15: 66. PMID 28738801 DOI: 10.1186/S12915-017-0404-4 |
0.388 |
|
| 2017 |
Kamariah N, Eisenhaber B, Eisenhaber F, Gruber G. Essential role of the flexible linker on the conformational equilibrium of bacterial peroxiredoxin reductase for effective regeneration of peroxiredoxin. The Journal of Biological Chemistry. PMID 28270505 DOI: 10.1074/Jbc.M117.775858 |
0.335 |
|
| 2017 |
Lua WH, Ling WL, Su CT, Yeo JY, Verma CS, Eisenhaber B, Eisenhaber F, Gan SK. Discovery of a novel splice variant of Fcar (CD89) unravels sequence segments necessary for efficient secretion: a story of bad signal peptides and good ones that nevertheless do not make it. Cell Cycle (Georgetown, Tex.). 0. PMID 28103138 DOI: 10.1080/15384101.2017.1281480 |
0.331 |
|
| 2016 |
Yap CK, Eisenhaber B, Eisenhaber F, Wong WC. xHMMER3x2: Utilizing HMMER3's speed and HMMER2's sensitivity and specificity in the glocal alignment mode for improved large-scale protein domain annotation. Biology Direct. 11: 63. PMID 27894340 DOI: 10.1186/S13062-016-0163-0 |
0.327 |
|
| 2016 |
Kamariah N, Sek MF, Eisenhaber B, Eisenhaber F, Grüber G. Transition steps in peroxide reduction and a molecular switch for peroxide robustness of prokaryotic peroxiredoxins. Scientific Reports. 6: 37610. PMID 27892488 DOI: 10.1038/Srep37610 |
0.308 |
|
| 2016 |
Berezovsky IN, Guarnera E, Zheng Z, Eisenhaber B, Eisenhaber F. Protein function machinery: from basic structural units to modulation of activity. Current Opinion in Structural Biology. 42: 67-74. PMID 27865209 DOI: 10.1016/J.Sbi.2016.10.021 |
0.388 |
|
| 2016 |
Eisenhaber B, Kuchibhatla D, Sherman W, Sirota FL, Berezovsky IN, Wong WC, Eisenhaber F. The Recipe for Protein Sequence-Based Function Prediction and Its Implementation in the ANNOTATOR Software Environment. Methods in Molecular Biology (Clifton, N.J.). 1415: 477-506. PMID 27115649 DOI: 10.1007/978-1-4939-3572-7_25 |
0.422 |
|
| 2015 |
Kamariah N, Nartey W, Eisenhaber B, Eisenhaber F, Grüber G. Low resolution solution structure of an enzymatic active AhpC10:AhpF2 ensemble of the Escherichia coli Alkyl hydroperoxide Reductase. Journal of Structural Biology. PMID 26584540 DOI: 10.1016/J.Jsb.2015.11.004 |
0.338 |
|
| 2015 |
Sherman WA, Kuchibhatla DB, Limviphuvadh V, Maurer-Stroh S, Eisenhaber B, Eisenhaber F. HPMV: Human protein mutation viewer - relating sequence mutations to protein sequence architecture and function changes. Journal of Bioinformatics and Computational Biology. 13: 1550028. PMID 26503432 DOI: 10.1142/S0219720015500286 |
0.384 |
|
| 2015 |
Nartey W, Basak S, Kamariah N, Manimekalai MS, Robson S, Wagner G, Eisenhaber B, Eisenhaber F, Grüber G. NMR studies reveal a novel grab and release mechanism for efficient catalysis of the bacterial 2-Cys peroxiredoxin machinery. The Febs Journal. PMID 26402142 DOI: 10.1111/Febs.13522 |
0.302 |
|
| 2015 |
Wong WC, Yap CK, Eisenhaber B, Eisenhaber F. dissectHMMER: a HMMER-based score dissection framework that statistically evaluates fold-critical sequence segments for domain fold similarity. Biology Direct. 10: 39. PMID 26228544 DOI: 10.1186/S13062-015-0068-3 |
0.45 |
|
| 2015 |
Kamariah N, Manimekalai MS, Nartey W, Eisenhaber F, Eisenhaber B, Grüber G. Crystallographic and solution studies of NAD(+)- and NADH-bond alkylhydroperoxide reductase subunit F (AhpF) from Escherichia coli provide insight into sequential enzymatic steps. Biochimica Et Biophysica Acta. PMID 26092085 DOI: 10.1016/J.Bbabio.2015.06.011 |
0.325 |
|
| 2015 |
Sirota FL, Maurer-Stroh S, Eisenhaber B, Eisenhaber F. Single-residue posttranslational modification sites at the N-terminus, C-terminus or in-between: To be or not to be exposed for enzyme access. Proteomics. PMID 26038108 DOI: 10.1002/Pmic.201400633 |
0.419 |
|
| 2014 |
Dip PV, Kamariah N, Subramanian Manimekalai MS, Nartey W, Balakrishna AM, Eisenhaber F, Eisenhaber B, Grüber G. Structure, mechanism and ensemble formation of the alkylhydroperoxide reductase subunits AhpC and AhpF from Escherichia coli. Acta Crystallographica. Section D, Biological Crystallography. 70: 2848-62. PMID 25372677 DOI: 10.1107/S1399004714019233 |
0.3 |
|
| 2014 |
Dip PV, Kamariah N, Nartey W, Beushausen C, Kostyuchenko VA, Ng TS, Lok SM, Saw WG, Eisenhaber F, Eisenhaber B, Grüber G. Key roles of the Escherichia coli AhpC C-terminus in assembly and catalysis of alkylhydroperoxide reductase, an enzyme essential for the alleviation of oxidative stress. Biochimica Et Biophysica Acta. 1837: 1932-43. PMID 25193562 DOI: 10.1016/J.Bbabio.2014.08.007 |
0.336 |
|
| 2014 |
Maurer-Stroh S, Li Y, Bastien N, Gunalan V, Lee RT, Eisenhaber F, Booth TF. Potential human adaptation mutation of influenza A(H5N1) virus, Canada. Emerging Infectious Diseases. 20: 1580-2. PMID 25153690 DOI: 10.3201/Eid2009.140240 |
0.311 |
|
| 2014 |
Wong WC, Maurer-Stroh S, Eisenhaber B, Eisenhaber F. On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation. Bmc Bioinformatics. 15: 166. PMID 24890864 DOI: 10.1186/1471-2105-15-166 |
0.439 |
|
| 2014 |
Eisenhaber B, Eisenhaber S, Kwang TY, Grüber G, Eisenhaber F. Transamidase subunit GAA1/GPAA1 is a M28 family metallo-peptide-synthetase that catalyzes the peptide bond formation between the substrate protein's omega-site and the GPI lipid anchor's phosphoethanolamine. Cell Cycle (Georgetown, Tex.). 13: 1912-7. PMID 24743167 DOI: 10.4161/Cc.28761 |
0.309 |
|
| 2013 |
Eisenhaber F, Sung WK, Wong L. International Conference on Genome Informatics (GIW 2013) in Singapore: Introduction to the systems biology contributions. Bmc Systems Biology. 7: I1. PMID 24625351 DOI: 10.1186/1752-0509-7-S6-I1 |
0.349 |
|
| 2013 |
Ma J, Eisenhaber F, Maurer-Stroh S. Automatic phylogenetic classification of bacterial beta-lactamase sequences including structural and antibiotic substrate preference information. Journal of Bioinformatics and Computational Biology. 11: 1343011. PMID 24372040 DOI: 10.1142/S0219720013430117 |
0.319 |
|
| 2013 |
Maurer-Stroh S, Gunalan V, Wong WC, Eisenhaber F. A simple shortcut to unsupervised alignment-free phylogenetic genome groupings, even from unassembled sequencing reads. Journal of Bioinformatics and Computational Biology. 11: 1343005. PMID 24372034 DOI: 10.1142/S0219720013430051 |
0.334 |
|
| 2013 |
Goncearenco A, Mitternacht S, Yong T, Eisenhaber B, Eisenhaber F, Berezovsky IN. SPACER: Server for predicting allosteric communication and effects of regulation. Nucleic Acids Research. 41: W266-72. PMID 23737445 DOI: 10.1093/Nar/Gkt460 |
0.325 |
|
| 2013 |
Saw WG, Eisenhaber B, Eisenhaber F, Grüber G. Low-resolution structure of the soluble domain GPAA1 (yGPAA170-247) of the glycosylphosphatidylinositol transamidase subunit GPAA1 from Saccharomyces cerevisiae. Bioscience Reports. 33: e00033. PMID 23458223 DOI: 10.1042/Bsr20120107 |
0.336 |
|
| 2013 |
Maurer-Stroh S, Gao H, Han H, Baeten L, Schymkowitz J, Rousseau F, Zhang L, Eisenhaber F. Motif discovery with data mining in 3D protein structure databases: discovery, validation and prediction of the U-shape zinc binding ("Huf-Zinc") motif. Journal of Bioinformatics and Computational Biology. 11: 1340008. PMID 23427990 DOI: 10.1142/S0219720013400088 |
0.434 |
|
| 2013 |
Marakasova ES, Akhmatova NK, Amaya M, Eisenhaber B, Eisenhaber F, van Hoek ML, Baranova AV. Prenylation: From bacteria to eukaryotes Molecular Biology. 47: 622-633. DOI: 10.1134/S0026893313050130 |
0.308 |
|
| 2012 |
Sirota FL, Batagov A, Schneider G, Eisenhaber B, Eisenhaber F, Maurer-Stroh S. Beware of moving targets: reference proteome content fluctuates substantially over the years. Journal of Bioinformatics and Computational Biology. 10: 1250020. PMID 22867629 DOI: 10.1142/S0219720012500205 |
0.393 |
|
| 2012 |
Eisenhaber F. A decade after the first full human genome sequencing: when will we understand our own genome? Journal of Bioinformatics and Computational Biology. 10: 1271001. PMID 22849370 DOI: 10.1142/S0219720012710011 |
0.334 |
|
| 2012 |
Wong WC, Maurer-Stroh S, Schneider G, Eisenhaber F. Transmembrane helix: simple or complex. Nucleic Acids Research. 40: W370-5. PMID 22564899 DOI: 10.1093/Nar/Gks379 |
0.386 |
|
| 2012 |
Tan J, Kuchibhatla D, Sirota FL, Sherman WA, Gattermayer T, Kwoh CY, Eisenhaber F, Schneider G, Maurer-Stroh S. Tachyon search speeds up retrieval of similar sequences by several orders of magnitude. Bioinformatics (Oxford, England). 28: 1645-6. PMID 22531216 DOI: 10.1093/Bioinformatics/Bts197 |
0.393 |
|
| 2011 |
Kunze M, Neuberger G, Maurer-Stroh S, Ma J, Eck T, Braverman N, Schmid JA, Eisenhaber F, Berger J. Structural requirements for interaction of peroxisomal targeting signal 2 and its receptor PEX7. The Journal of Biological Chemistry. 286: 45048-62. PMID 22057399 DOI: 10.1074/Jbc.M111.301853 |
0.367 |
|
| 2011 |
Wong WC, Maurer-Stroh S, Eisenhaber F. Not all transmembrane helices are born equal: Towards the extension of the sequence homology concept to membrane proteins. Biology Direct. 6: 57. PMID 22024092 DOI: 10.1186/1745-6150-6-57 |
0.401 |
|
| 2011 |
Kamariah N, Eisenhaber F, Adhikari S, Eisenhaber B, Grüber G. Purification and crystallization of yeast glycosylphosphatidylinositol transamidase subunit PIG-S (PIG-S(71-467)). Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 67: 896-9. PMID 21821889 DOI: 10.1107/S1744309111024080 |
0.338 |
|
| 2011 |
Dellago H, Löscher M, Ajuh P, Ryder U, Kaisermayer C, Grillari-Voglauer R, Fortschegger K, Gross S, Gstraunthaler A, Borth N, Eisenhaber F, Lamond AI, Grillari J. Exo70, a subunit of the exocyst complex, interacts with SNEV(hPrp19/hPso4) and is involved in pre-mRNA splicing. The Biochemical Journal. 438: 81-91. PMID 21639856 DOI: 10.1042/Bj20110183 |
0.326 |
|
| 2011 |
Wong WC, Maurer-Stroh S, Eisenhaber F. The Janus-faced E-values of HMMER2: extreme value distribution or logistic function? Journal of Bioinformatics and Computational Biology. 9: 179-206. PMID 21328712 DOI: 10.1142/S0219720011005264 |
0.318 |
|
| 2011 |
Prokesch A, Bogner-Strauss JG, Hackl H, Rieder D, Neuhold C, Walenta E, Krogsdam A, Scheideler M, Papak C, Wong WC, Vinson C, Eisenhaber F, Trajanoski Z. Arxes: retrotransposed genes required for adipogenesis. Nucleic Acids Research. 39: 3224-39. PMID 21177646 DOI: 10.1093/Nar/Gkq1289 |
0.342 |
|
| 2011 |
Toh YK, Kamariah N, Maurer-Stroh S, Roessle M, Eisenhaber F, Adhikari S, Eisenhaber B, Grüber G. Structural insight into the glycosylphosphatidylinositol transamidase subunits PIG-K and PIG-S from yeast. Journal of Structural Biology. 173: 271-81. PMID 21134462 DOI: 10.1016/J.Jsb.2010.11.026 |
0.305 |
|
| 2010 |
Dhir S, Pacurar M, Franklin D, Gáspári Z, Kertész-Farkas A, Kocsor A, Eisenhaber F, Pongor S. Detecting atypical examples of known domain types by sequence similarity searching: the SBASE domain library approach. Current Protein & Peptide Science. 11: 538-49. PMID 20887262 DOI: 10.2174/138920310794109148 |
0.339 |
|
| 2010 |
Limviphuvadh V, Chua LL, Rahim RA, Eisenhaber F, Maurer-Stroh S, Adhikari S. Similarity of molecular phenotype between known epilepsy gene LGI1 and disease candidate gene LGI2. Bmc Biochemistry. 11: 39. PMID 20863412 DOI: 10.1186/1471-2091-11-39 |
0.326 |
|
| 2010 |
Wong WC, Maurer-Stroh S, Eisenhaber F. More than 1,001 problems with protein domain databases: transmembrane regions, signal peptides and the issue of sequence homology. Plos Computational Biology. 6: e1000867. PMID 20686689 DOI: 10.1371/Journal.Pcbi.1000867 |
0.412 |
|
| 2010 |
Bogner-Strauss JG, Prokesch A, Sanchez-Cabo F, Rieder D, Hackl H, Duszka K, Krogsdam A, Di Camillo B, Walenta E, Klatzer A, Lass A, Pinent M, Wong WC, Eisenhaber F, Trajanoski Z. Reconstruction of gene association network reveals a transmembrane protein required for adipogenesis and targeted by PPARγ. Cellular and Molecular Life Sciences : Cmls. 67: 4049-64. PMID 20552250 DOI: 10.1007/S00018-010-0424-5 |
0.305 |
|
| 2010 |
Van Damme P, Maurer-Stroh S, Hao H, Colaert N, Timmerman E, Eisenhaber F, Vandekerckhove J, Gevaert K. The substrate specificity profile of human granzyme A. Biological Chemistry. 391: 983-97. PMID 20536382 DOI: 10.1515/Bc.2010.096 |
0.343 |
|
| 2010 |
Eisenhaber B, Eisenhaber F. Prediction of posttranslational modification of proteins from their amino acid sequence. Methods in Molecular Biology (Clifton, N.J.). 609: 365-84. PMID 20221930 DOI: 10.1007/978-1-60327-241-4_21 |
0.436 |
|
| 2010 |
Schneider G, Wildpaner M, Sirota FL, Maurer-Stroh S, Eisenhaber B, Eisenhaber F. Integrated tools for biomolecular sequence-based function prediction as exemplified by the ANNOTATOR software environment. Methods in Molecular Biology (Clifton, N.J.). 609: 257-67. PMID 20221924 DOI: 10.1007/978-1-60327-241-4_15 |
0.344 |
|
| 2010 |
Ooi HS, Schneider G, Chan YL, Lim TT, Eisenhaber B, Eisenhaber F. Databases of protein-protein interactions and complexes. Methods in Molecular Biology (Clifton, N.J.). 609: 145-59. PMID 20221918 DOI: 10.1007/978-1-60327-241-4_9 |
0.408 |
|
| 2010 |
Sirota FL, Ooi HS, Gattermayer T, Schneider G, Eisenhaber F, Maurer-Stroh S. Parameterization of disorder predictors for large-scale applications requiring high specificity by using an extended benchmark dataset. Bmc Genomics. 11: S15. PMID 20158872 DOI: 10.1186/1471-2164-11-S1-S15 |
0.313 |
|
| 2009 |
Tse WK, Eisenhaber B, Ho SH, Ng Q, Eisenhaber F, Jiang YJ. Genome-wide loss-of-function analysis of deubiquitylating enzymes for zebrafish development. Bmc Genomics. 10: 637. PMID 20040115 DOI: 10.1186/1471-2164-10-637 |
0.356 |
|
| 2009 |
Grillari J, Löscher M, Denegri M, Lee K, Fortschegger K, Eisenhaber F, Ajuh P, Lamond AI, Katinger H, Grillari-Voglauer R. Blom7alpha is a novel heterogeneous nuclear ribonucleoprotein K homology domain protein involved in pre-mRNA splicing that interacts with SNEVPrp19-Pso4. The Journal of Biological Chemistry. 284: 29193-204. PMID 19641227 DOI: 10.1074/Jbc.M109.036632 |
0.335 |
|
| 2009 |
Ooi HS, Kwo CY, Wildpaner M, Sirota FL, Eisenhaber B, Maurer-Stroh S, Wong WC, Schleiffer A, Eisenhaber F, Schneider G. ANNIE: integrated de novo protein sequence annotation. Nucleic Acids Research. 37: W435-40. PMID 19389726 DOI: 10.1093/Nar/Gkp254 |
0.416 |
|
| 2009 |
Dhar PK, Thwin CS, Tun K, Tsumoto Y, Maurer-Stroh S, Eisenhaber F, Surana U. Synthesizing non-natural parts from natural genomic template. Journal of Biological Engineering. 3: 2. PMID 19187561 DOI: 10.1186/1754-1611-3-2 |
0.396 |
|
| 2008 |
Benetka W, Mehlmer N, Maurer-Stroh S, Sammer M, Koranda M, Neumüller R, Betschinger J, Knoblich JA, Teige M, Eisenhaber F. Experimental testing of predicted myristoylation targets involved in asymmetric cell division and calcium-dependent signalling. Cell Cycle (Georgetown, Tex.). 7: 3709-19. PMID 19029837 DOI: 10.4161/Cc.7.23.7176 |
0.384 |
|
| 2007 |
Eisenhaber B, Eisenhaber F. Posttranslational modifications and subcellular localization signals: indicators of sequence regions without inherent 3D structure? Current Protein & Peptide Science. 8: 197-203. PMID 17430201 DOI: 10.2174/138920307780363424 |
0.443 |
|
| 2007 |
Maurer-Stroh S, Koranda M, Benetka W, Schneider G, Sirota FL, Eisenhaber F. Towards complete sets of farnesylated and geranylgeranylated proteins. Plos Computational Biology. 3: e66. PMID 17411337 DOI: 10.1371/Journal.Pcbi.0030066 |
0.423 |
|
| 2007 |
Eisenhaber B, Chumak N, Eisenhaber F, Hauser MT. The ring between ring fingers (RBR) protein family. Genome Biology. 8: 209. PMID 17367545 DOI: 10.1186/Gb-2007-8-3-209 |
0.389 |
|
| 2007 |
Neuberger G, Schneider G, Eisenhaber F. pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model. Biology Direct. 2: 1. PMID 17222345 DOI: 10.1186/1745-6150-2-1 |
0.379 |
|
| 2006 |
Novatchkova M, Schneider G, Fritz R, Eisenhaber F, Schleiffer A. DOUTfinder--identification of distant domain outliers using subsignificant sequence similarity. Nucleic Acids Research. 34: W214-8. PMID 16844996 DOI: 10.1093/Nar/Gkl332 |
0.402 |
|
| 2006 |
Watrin E, Schleiffer A, Tanaka K, Eisenhaber F, Nasmyth K, Peters JM. Human Scc4 is required for cohesin binding to chromatin, sister-chromatid cohesion, and mitotic progression. Current Biology : Cb. 16: 863-74. PMID 16682347 DOI: 10.1016/J.Cub.2006.03.049 |
0.312 |
|
| 2006 |
Schneider G, Neuberger G, Wildpaner M, Tian S, Berezovsky I, Eisenhaber F. Application of a sensitive collection heuristic for very large protein families: evolutionary relationship between adipose triglyceride lipase (ATGL) and classic mammalian lipases. Bmc Bioinformatics. 7: 164. PMID 16551354 DOI: 10.1186/1471-2105-7-164 |
0.411 |
|
| 2006 |
Benetka W, Koranda M, Maurer-Stroh S, Pittner F, Eisenhaber F. Farnesylation or geranylgeranylation? Efficient assays for testing protein prenylation in vitro and in vivo. Bmc Biochemistry. 7: 6. PMID 16507103 DOI: 10.1186/1471-2091-7-6 |
0.313 |
|
| 2006 |
Benetka W, Koranda M, Eisenhaber F. Protein prenylation: An (almost) comprehensive overview on discovery history, enzymology, and significance in physiology and disease Monatshefte Fur Chemie. 137: 1241-1281. DOI: 10.1007/S00706-006-0534-9 |
0.356 |
|
| 2005 |
Hackl H, Burkard TR, Sturn A, Rubio R, Schleiffer A, Tian S, Quackenbush J, Eisenhaber F, Trajanoski Z. Molecular processes during fat cell development revealed by gene expression profiling and functional annotation. Genome Biology. 6: R108. PMID 16420668 DOI: 10.1186/Gb-2005-6-13-R108 |
0.356 |
|
| 2005 |
Grillari J, Ajuh P, Stadler G, Löscher M, Voglauer R, Ernst W, Chusainow J, Eisenhaber F, Pokar M, Fortschegger K, Grey M, Lamond AI, Katinger H. SNEV is an evolutionarily conserved splicing factor whose oligomerization is necessary for spliceosome assembly. Nucleic Acids Research. 33: 6868-83. PMID 16332694 DOI: 10.1093/Nar/Gki986 |
0.384 |
|
| 2005 |
Novatchkova M, Wildpaner M, Schweizer D, Eisenhaber F. PhyloDome--visualization of taxonomic distributions of domains occurring in eukaryote protein sequence sets. Nucleic Acids Research. 33: W121-5. PMID 15980439 DOI: 10.1093/Nar/Gki373 |
0.402 |
|
| 2005 |
Maurer-Stroh S, Eisenhaber F. Refinement and prediction of protein prenylation motifs. Genome Biology. 6: R55. PMID 15960807 DOI: 10.1186/Gb-2005-6-6-R55 |
0.399 |
|
| 2005 |
Kraft C, Vodermaier HC, Maurer-Stroh S, Eisenhaber F, Peters JM. The WD40 propeller domain of Cdh1 functions as a destruction box receptor for APC/C substrates. Molecular Cell. 18: 543-53. PMID 15916961 DOI: 10.1016/J.Molcel.2005.04.023 |
0.336 |
|
| 2005 |
Novatchkova M, Bachmair A, Eisenhaber B, Eisenhaber F. Proteins with two SUMO-like domains in chromatin-associated complexes: the RENi (Rad60-Esc2-NIP45) family. Bmc Bioinformatics. 6: 22. PMID 15698469 DOI: 10.1186/1471-2105-6-22 |
0.419 |
|
| 2005 |
Betschinger J, Eisenhaber F, Knoblich JA. Phosphorylation-induced autoinhibition regulates the cytoskeletal protein Lethal (2) giant larvae. Current Biology : Cb. 15: 276-82. PMID 15694314 DOI: 10.1016/J.Cub.2005.01.012 |
0.337 |
|
| 2004 |
Neuberger G, Kunze M, Eisenhaber F, Berger J, Hartig A, Brocard C. Hidden localization motifs: naturally occurring peroxisomal targeting signals in non-peroxisomal proteins. Genome Biology. 5: R97. PMID 15575971 DOI: 10.1186/Gb-2004-5-12-R97 |
0.439 |
|
| 2004 |
Novatchkova M, Budhiraja R, Coupland G, Eisenhaber F, Bachmair A. SUMO conjugation in plants. Planta. 220: 1-8. PMID 15449058 DOI: 10.1007/S00425-004-1370-Y |
0.32 |
|
| 2004 |
Kurzbauer R, Teis D, de Araujo ME, Maurer-Stroh S, Eisenhaber F, Bourenkov GP, Bartunik HD, Hekman M, Rapp UR, Huber LA, Clausen T. Crystal structure of the p14/MP1 scaffolding complex: how a twin couple attaches mitogen-activated protein kinase signaling to late endosomes. Proceedings of the National Academy of Sciences of the United States of America. 101: 10984-9. PMID 15263099 DOI: 10.1073/Pnas.0403435101 |
0.36 |
|
| 2004 |
Lorenz A, Wells JL, Pryce DW, Novatchkova M, Eisenhaber F, McFarlane RJ, Loidl J. S. pombe meiotic linear elements contain proteins related to synaptonemal complex components. Journal of Cell Science. 117: 3343-51. PMID 15226405 DOI: 10.1242/Jcs.01203 |
0.309 |
|
| 2004 |
Eisenhaber B, Eisenhaber F, Maurer-Stroh S, Neuberger G. Prediction of sequence signals for lipid post-translational modifications: insights from case studies. Proteomics. 4: 1614-25. PMID 15174131 DOI: 10.1002/Pmic.200300781 |
0.439 |
|
| 2004 |
Maurer-Stroh S, Eisenhaber F. Myristoylation of viral and bacterial proteins. Trends in Microbiology. 12: 178-85. PMID 15051068 DOI: 10.1016/J.Tim.2004.02.006 |
0.358 |
|
| 2004 |
Eisenhaber B, Schneider G, Wildpaner M, Eisenhaber F. A sensitive predictor for potential GPI lipid modification sites in fungal protein sequences and its application to genome-wide studies for Aspergillus nidulans, Candida albicans, Neurospora crassa, Saccharomyces cerevisiae and Schizosaccharomyces pombe. Journal of Molecular Biology. 337: 243-53. PMID 15003443 DOI: 10.1016/J.Jmb.2004.01.025 |
0.439 |
|
| 2004 |
Maurer-Stroh S, Gouda M, Novatchkova M, Schleiffer A, Schneider G, Sirota FL, Wildpaner M, Hayashi N, Eisenhaber F. MYRbase: analysis of genome-wide glycine myristoylation enlarges the functional spectrum of eukaryotic myristoylated proteins. Genome Biology. 5: R21. PMID 15003124 DOI: 10.1186/Gb-2004-5-3-R21 |
0.412 |
|
| 2004 |
Rabitsch KP, Gregan J, Schleiffer A, Javerzat JP, Eisenhaber F, Nasmyth K. Two fission yeast homologs of Drosophila Mei-S332 are required for chromosome segregation during meiosis I and II. Current Biology : Cb. 14: 287-301. PMID 14972679 DOI: 10.1016/J.Cub.2004.01.051 |
0.352 |
|
| 2004 |
Novatchkova M, Eisenhaber F. Linking transcriptional mediators via the GACKIX domain super family. Current Biology : Cb. 14: R54-5. PMID 14738747 DOI: 10.1016/J.Cub.2003.12.042 |
0.423 |
|
| 2003 |
Eisenhaber B, Wildpaner M, Schultz CJ, Borner GH, Dupree P, Eisenhaber F. Glycosylphosphatidylinositol lipid anchoring of plant proteins. Sensitive prediction from sequence- and genome-wide studies for Arabidopsis and rice. Plant Physiology. 133: 1691-701. PMID 14681532 DOI: 10.1104/Pp.103.023580 |
0.352 |
|
| 2003 |
Washietl S, Eisenhaber F. Reannotation of the CELO genome characterizes a set of previously unassigned open reading frames and points to novel modes of host interaction in avian adenoviruses. Bmc Bioinformatics. 4: 55. PMID 14604445 DOI: 10.1186/1471-2105-4-55 |
0.383 |
|
| 2003 |
Vodermaier HC, Gieffers C, Maurer-Stroh S, Eisenhaber F, Peters JM. TPR subunits of the anaphase-promoting complex mediate binding to the activator protein CDH1. Current Biology : Cb. 13: 1459-68. PMID 12956947 DOI: 10.1016/S0960-9822(03)00581-5 |
0.372 |
|
| 2003 |
Maurer-Stroh S, Washietl S, Eisenhaber F. Protein prenyltransferases: anchor size, pseudogenes and parasites. Biological Chemistry. 384: 977-89. PMID 12956414 DOI: 10.1515/Bc.2003.110 |
0.39 |
|
| 2003 |
Eisenhaber F, Eisenhaber B, Kubina W, Maurer-Stroh S, Neuberger G, Schneider G, Wildpaner M. Prediction of lipid posttranslational modifications and localization signals from protein sequences: big-Pi, NMT and PTS1. Nucleic Acids Research. 31: 3631-4. PMID 12824382 DOI: 10.1093/Nar/Gkg537 |
0.425 |
|
| 2003 |
Novatchkova M, Leibbrandt A, Werzowa J, Neubüser A, Eisenhaber F. The STIR-domain superfamily in signal transduction, development and immunity. Trends in Biochemical Sciences. 28: 226-9. PMID 12765832 DOI: 10.1016/S0968-0004(03)00067-7 |
0.363 |
|
| 2003 |
Wick N, Luedemann S, Vietor I, Cotten M, Wildpaner M, Schneider G, Eisenhaber F, Huber LA. Induction of short interspersed nuclear repeat-containing transcripts in epithelial cells upon infection with a chicken adenovirus. Journal of Molecular Biology. 328: 779-90. PMID 12729754 DOI: 10.1016/S0022-2836(03)00363-2 |
0.308 |
|
| 2003 |
Neuberger G, Maurer-Stroh S, Eisenhaber B, Hartig A, Eisenhaber F. Prediction of peroxisomal targeting signal 1 containing proteins from amino acid sequence. Journal of Molecular Biology. 328: 581-92. PMID 12706718 DOI: 10.1016/S0022-2836(03)00319-X |
0.428 |
|
| 2003 |
Neuberger G, Maurer-Stroh S, Eisenhaber B, Hartig A, Eisenhaber F. Motif refinement of the peroxisomal targeting signal 1 and evaluation of taxon-specific differences. Journal of Molecular Biology. 328: 567-79. PMID 12706717 DOI: 10.1016/S0022-2836(03)00318-8 |
0.422 |
|
| 2003 |
Schleiffer A, Kaitna S, Maurer-Stroh S, Glotzer M, Nasmyth K, Eisenhaber F. Kleisins: a superfamily of bacterial and eukaryotic SMC protein partners. Molecular Cell. 11: 571-5. PMID 12667442 DOI: 10.1016/S1097-2765(03)00108-4 |
0.396 |
|
| 2003 |
Eisenhaber B, Maurer-Stroh S, Novatchkova M, Schneider G, Eisenhaber F. Enzymes and auxiliary factors for GPI lipid anchor biosynthesis and post-translational transfer to proteins. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 25: 367-85. PMID 12655644 DOI: 10.1002/Bies.10254 |
0.425 |
|
| 2003 |
Maurer-Stroh S, Dickens NJ, Hughes-Davies L, Kouzarides T, Eisenhaber F, Ponting CP. The Tudor domain 'Royal Family': Tudor, plant Agenet, Chromo, PWWP and MBT domains. Trends in Biochemical Sciences. 28: 69-74. PMID 12575993 DOI: 10.1016/S0968-0004(03)00004-5 |
0.325 |
|
| 2002 |
Cserzö M, Eisenhaber F, Eisenhaber B, Simon I. On filtering false positive transmembrane protein predictions. Protein Engineering. 15: 745-52. PMID 12456873 DOI: 10.1093/Protein/15.9.745 |
0.414 |
|
| 2002 |
Novatchkova M, Eisenhaber F. A CH domain-containing N terminus in NuMA? Protein Science. 11: 2281-2284. PMID 12237450 DOI: 10.1110/Ps.0221002 |
0.363 |
|
| 2002 |
Maurer-Stroh S, Eisenhaber B, Eisenhaber F. N-terminal N-myristoylation of proteins: prediction of substrate proteins from amino acid sequence. Journal of Molecular Biology. 317: 541-57. PMID 11955008 DOI: 10.1006/Jmbi.2002.5426 |
0.462 |
|
| 2002 |
Maurer-Stroh S, Eisenhaber B, Eisenhaber F. N-terminal N-myristoylation of proteins: refinement of the sequence motif and its taxon-specific differences. Journal of Molecular Biology. 317: 523-40. PMID 11955007 DOI: 10.1006/Jmbi.2002.5425 |
0.438 |
|
| 2002 |
Ivanov D, Schleiffer A, Eisenhaber F, Mechtler K, Haering CH, Nasmyth K. Eco1 is a novel acetyltransferase that can acetylate proteins involved in cohesion. Current Biology : Cb. 12: 323-8. PMID 11864574 DOI: 10.1016/S0960-9822(02)00681-4 |
0.39 |
|
| 2001 |
Bachmair A, Novatchkova M, Potuschak T, Eisenhaber F. Ubiquitylation in plants: A post-genomic look at a post-translational modification Trends in Plant Science. 6: 463-470. PMID 11590065 DOI: 10.1016/S1360-1385(01)02080-5 |
0.312 |
|
| 2001 |
Christian S, Ahorn H, Novatchkoval M, Garin-Chesa P, Park JE, Weber G, Eisenhaber F, Rettig WJ, Lenter MC. Molecular Cloning and Characterization of EndoGlyx-1, an EMILIN-like Multisubunit Glycoprotein of Vascular Endothelium Journal of Biological Chemistry. 276: 48588-48595. PMID 11559704 DOI: 10.1074/Jbc.M106152200 |
0.388 |
|
| 2001 |
Eisenhaber F, Wechselberger C, Kreil G. The Brix domain protein family - A key to the ribosomal biogenesis pathway? Trends in Biochemical Sciences. 26: 345-347. PMID 11406393 DOI: 10.1016/S0968-0004(01)01851-5 |
0.387 |
|
| 2001 |
Eisenhaber B, Bork P, Eisenhaber F. Post-translational GPI lipid anchor modification of proteins in kingdoms of life: analysis of protein sequence data from complete genomes. Protein Engineering. 14: 17-25. PMID 11287675 DOI: 10.1093/Protein/14.1.17 |
0.568 |
|
| 2001 |
Christian S, Ahorn H, Koehler A, Eisenhaber F, Rodi HP, Garin-Chesa P, Park JE, Rettig WJ, Lenter MC. Molecular Cloning and Characterization of Endosialin, a C-type Lectin-like Cell Surface Receptor of Tumor Endothelium Journal of Biological Chemistry. 276: 7408-7414. PMID 11084048 DOI: 10.1074/Jbc.M009604200 |
0.385 |
|
| 2000 |
Panizza S, Tanaka T, Hochwagen A, Eisenhaber F, Nasmyth K. Pds5 cooperates with cohesin in maintaining sister chromatid cohesion. Current Biology : Cb. 10: 1557-64. PMID 11137006 DOI: 10.1016/S0960-9822(00)00854-X |
0.355 |
|
| 2000 |
Eisenhaber B, Bork P, Yuan Y, Löffler G, Eisenhaber F. Automated annotation of GPI anchor sites: case study C. elegans. Trends in Biochemical Sciences. 25: 340-1. PMID 10871885 DOI: 10.1016/S0968-0004(00)01601-7 |
0.428 |
|
| 1999 |
Eisenhaber B, Bork P, Eisenhaber F. Prediction of potential GPI-modification sites in proprotein sequences. Journal of Molecular Biology. 292: 741-58. PMID 10497036 DOI: 10.1006/Jmbi.1999.3069 |
0.567 |
|
| 1999 |
Eisenhaber F, Bork P. Evaluation of human-readable annotation in biomolecular sequence databases with biological rule libraries. Bioinformatics (Oxford, England). 15: 528-35. PMID 10487860 |
0.452 |
|
| 1999 |
Sunyaev SR, Eisenhaber F, Rodchenkov IV, Eisenhaber B, Tumanyan VG, Kuznetsov EN. PSIC: profile extraction from sequence alignments with position-specific counts of independent observations. Protein Engineering. 12: 387-94. PMID 10360979 DOI: 10.1093/Protein/12.5.387 |
0.377 |
|
| 1999 |
Eisenhaber F. Getting informed in bioinformatics Trends in Cell Biology. 9: 289. DOI: 10.1016/S0962-8924(99)01555-X |
0.409 |
|
| 1998 |
Eisenhaber B, Bork P, Eisenhaber F. Sequence properties of GPI-anchored proteins near the omega-site: constraints for the polypeptide binding site of the putative transamidase. Protein Engineering. 11: 1155-61. PMID 9930665 DOI: 10.1093/Protein/11.12.1155 |
0.538 |
|
| 1998 |
Bork P, Dandekar T, Diaz-Lazcoz Y, Eisenhaber F, Huynen M, Yuan Y. Predicting function: from genes to genomes and back. Journal of Molecular Biology. 283: 707-25. PMID 9790834 DOI: 10.1006/Jmbi.1998.2144 |
0.529 |
|
| 1998 |
Eisenhaber F, Bork P. Wanted: subcellular localization of proteins based on sequence. Trends in Cell Biology. 8: 169-70. PMID 9695832 DOI: 10.1016/S0962-8924(98)01226-4 |
0.536 |
|
| 1998 |
Huynen M, Doerks T, Eisenhaber F, Orengo C, Sunyaev S, Yuan Y, Bork P. Homology-based fold predictions for Mycoplasma genitalium proteins. Journal of Molecular Biology. 280: 323-6. PMID 9665839 DOI: 10.1006/Jmbi.1998.1884 |
0.558 |
|
| 1998 |
Sunyaev SR, Eisenhaber F, Argos P, Kuznetsov EN, Tumanyan VG. Are knowledge-based potentials derived from protein structure sets discriminative with respect to amino acid types? Proteins. 31: 225-46. PMID 9593195 DOI: 10.1002/(Sici)1097-0134(19980515)31:3<225::Aid-Prot1>3.0.Co;2-I |
0.357 |
|
| 1998 |
Bork P, Dandekar T, Eisenhaber F, Huynen M. Characterization of targeting domains by sequence analysis: glycogen-binding domains in protein phosphatases. Journal of Molecular Medicine (Berlin, Germany). 76: 77-9. PMID 9500672 DOI: 10.1007/s001090050194 |
0.454 |
|
| 1996 |
Eisenhaber F, Argos P. Hydrophobic regions on protein surfaces: Definition based on hydration shell structure and a quick method for their computation Protein Engineering. 9: 1121-1133. PMID 9010925 DOI: 10.1093/Protein/9.12.1121 |
0.313 |
|
| 1996 |
Eisenhaber F, Frömmel C, Argos P. Prediction of secondary structural content of proteins from their amino acid composition alone. II. The paradox with secondary structural class Proteins: Structure, Function and Genetics. 25: 169-179. PMID 8811733 DOI: 10.1002/(Sici)1097-0134(199606)25:2<169::Aid-Prot3>3.0.Co;2-D |
0.353 |
|
| 1996 |
Eisenhaber F, Imperiale F, Argos P, Frömmel C. Prediction of secondary structural content of proteins from their amino acid composition alone. I. New analytic vector decomposition methods Proteins: Structure, Function and Genetics. 25: 157-168. PMID 8811732 DOI: 10.1002/(Sici)1097-0134(199606)25:2<157::Aid-Prot2>3.0.Co;2-F |
0.355 |
|
| 1996 |
Walther D, Eisenhaber F, Argos P. Principles of helix-helix packing in proteins: The helical lattice superposition model Journal of Molecular Biology. 255: 536-553. PMID 8568896 DOI: 10.1006/Jmbi.1996.0044 |
0.328 |
|
| 1995 |
Juffer AH, Eisenhaber F, Hubbard SJ, Walther D, Argos P. Comparison of atomic solvation parametric sets: Applicability and limitations in protein folding and binding Protein Science. 4: 2499-2509. PMID 8580840 DOI: 10.1002/Pro.5560041206 |
0.355 |
|
| 1995 |
Eisenhaber F, Persson B, Argos P. Protein structure prediction: Recognition of primary, secondary, and tertiary structural features from amino acid sequence Critical Reviews in Biochemistry and Molecular Biology. 30: 1-94. PMID 7587278 DOI: 10.3109/10409239509085139 |
0.411 |
|
| 1993 |
Schrauber H, Eisenhaber F, Argos P. Rotamers: To be or not to be? An analysis of amino acid side-chain conformations in globular proteins Journal of Molecular Biology. 230: 592-612. PMID 8464066 DOI: 10.1006/Jmbi.1993.1172 |
0.304 |
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