| Year |
Citation |
Score |
| 2023 |
Pascoal F, Tomasino MP, Piredda R, Quero GM, Torgo L, Poulain J, Galand PE, Fuhrman JA, Mitchell A, Tinta T, Turk Dermastia T, Fernandez-Guerra A, Vezzi A, Logares R, Malfatti F, et al. Inter-comparison of marine microbiome sampling protocols. Isme Communications. 3: 84. PMID 37598259 DOI: 10.1038/s43705-023-00278-w |
0.644 |
|
| 2023 |
Dart E, Fuhrman JA, Ahlgren NA. Diverse Marine T4-like Cyanophage Communities Are Primarily Comprised of Low-Abundance Species Including Species with Distinct Seasonal, Persistent, Occasional, or Sporadic Dynamics. Viruses. 15. PMID 36851794 DOI: 10.3390/v15020581 |
0.343 |
|
| 2022 |
Yeh YC, Fuhrman JA. Contrasting diversity patterns of prokaryotes and protists over time and depth at the San-Pedro Ocean Time series. Isme Communications. 2: 36. PMID 37938286 DOI: 10.1038/s43705-022-00121-8 |
0.332 |
|
| 2022 |
Yeh YC, Fuhrman JA. Effects of phytoplankton, viral communities, and warming on free-living and particle-associated marine prokaryotic community structure. Nature Communications. 13: 7905. PMID 36550140 DOI: 10.1038/s41467-022-35551-4 |
0.35 |
|
| 2022 |
Parada AE, Mayali X, Weber PK, Wollard J, Santoro AE, Fuhrman JA, Pett-Ridge J, Dekas AE. Constraining the composition and quantity of organic matter used by abundant marine Thaumarchaeota. Environmental Microbiology. PMID 36478085 DOI: 10.1111/1462-2920.16299 |
0.649 |
|
| 2022 |
Weissman JL, Peras M, Barnum TP, Fuhrman JA. Benchmarking Community-Wide Estimates of Growth Potential from Metagenomes Using Codon Usage Statistics. Msystems. 7: e0074522. PMID 36190138 DOI: 10.1128/msystems.00745-22 |
0.33 |
|
| 2022 |
Milke F, Sanchez-Garcia S, Dlugosch L, McNichol J, Fuhrman J, Simon M, Wagner-Döbler I. Composition and Biogeography of Planktonic Pro- and Eukaryotic Communities in the Atlantic Ocean: Primer Choice Matters. Frontiers in Microbiology. 13: 895875. PMID 35836413 DOI: 10.3389/fmicb.2022.895875 |
0.319 |
|
| 2022 |
Tang T, Hou S, Fuhrman JA, Sun F. Phage-bacterial contig association prediction with a convolutional neural network. Bioinformatics (Oxford, England). 38: i45-i52. PMID 35758806 DOI: 10.1093/bioinformatics/btac239 |
0.712 |
|
| 2021 |
Weissman JL, Hou S, Fuhrman JA. Estimating maximal microbial growth rates from cultures, metagenomes, and single cells via codon usage patterns. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33723043 DOI: 10.1073/pnas.2016810118 |
0.71 |
|
| 2020 |
Long AM, Hou S, Ignacio-Espinoza JC, Fuhrman JA. Benchmarking microbial growth rate predictions from metagenomes. The Isme Journal. PMID 32939027 DOI: 10.1038/S41396-020-00773-1 |
0.724 |
|
| 2020 |
Messer LF, Ostrowski M, Doblin MA, Petrou K, Baird ME, Ingleton T, Bissett A, Van de Kamp J, Nelson T, Paulsen I, Bodrossy L, Fuhrman JA, Seymour JR, Brown MV. Microbial tropicalization driven by a strengthening western ocean boundary current. Global Change Biology. PMID 32715608 DOI: 10.1111/Gcb.15257 |
0.428 |
|
| 2019 |
Dekas AE, Parada AE, Mayali X, Fuhrman JA, Wollard J, Weber PK, Pett-Ridge J. Characterizing Chemoautotrophy and Heterotrophy in Marine Archaea and Bacteria With Single-Cell Multi-isotope NanoSIP. Frontiers in Microbiology. 10: 2682. PMID 31920997 DOI: 10.3389/Fmicb.2019.02682 |
0.699 |
|
| 2019 |
Ignacio-Espinoza JC, Ahlgren NA, Fuhrman JA. Long-term stability and Red Queen-like strain dynamics in marine viruses. Nature Microbiology. PMID 31819214 DOI: 10.1038/S41564-019-0628-X |
0.431 |
|
| 2019 |
Paterson JS, Smith RJ, McKerral JC, Dann LM, Launer E, Goonan P, Kleinig T, Fuhrman JA, Mitchell JG. A hydrocarbon contaminated aquifer reveals a Piggyback-the-Persistent viral strategy. Fems Microbiology Ecology. PMID 31314089 DOI: 10.1093/Femsec/Fiz116 |
0.427 |
|
| 2019 |
Gómez-Consarnau L, Needham DM, Weber PK, Fuhrman JA, Mayali X. Influence of Light on Particulate Organic Matter Utilization by Attached and Free-Living Marine Bacteria. Frontiers in Microbiology. 10: 1204. PMID 31214143 DOI: 10.3389/Fmicb.2019.01204 |
0.696 |
|
| 2019 |
Roux S, Trubl G, Goudeau D, Nath N, Couradeau E, Ahlgren NA, Zhan Y, Marsan D, Chen F, Fuhrman JA, Northen TR, Sullivan MB, Rich VI, Malmstrom RR, Eloe-Fadrosh EA. Optimizing genome assembly from PCR-amplified metagenomes. Peerj. 7: e6902. PMID 31119088 DOI: 10.7717/Peerj.6902 |
0.419 |
|
| 2019 |
Ahlgren NA, Perelman JN, Yeh YC, Fuhrman JA. Multi-year dynamics of fine-scale marine cyanobacterial populations are more strongly explained by phage interactions than abiotic, bottom-up factors. Environmental Microbiology. PMID 31106939 DOI: 10.1111/1462-2920.14687 |
0.437 |
|
| 2019 |
Sieradzki ET, Ignacio-Espinoza JC, Needham DM, Fichot EB, Fuhrman JA. Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes. Nature Communications. 10: 1169. PMID 30862830 DOI: 10.1038/S41467-019-09106-Z |
0.411 |
|
| 2019 |
Wang Z, Wang Y, Fuhrman JA, Sun F, Zhu S. Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences. Briefings in Bioinformatics. PMID 30860572 DOI: 10.1093/Bib/Bbz025 |
0.312 |
|
| 2018 |
Ignacio-Espinoza JC, Fuhrman JA. A non-tailed twist in the viral tale. Nature. 554: 38-39. PMID 32094830 DOI: 10.1038/D41586-018-00923-8 |
0.337 |
|
| 2018 |
Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, ... ... Fuhrman JA, et al. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature Biotechnology. PMID 30556814 DOI: 10.1038/Nbt.4306 |
0.765 |
|
| 2018 |
Sieradzki ET, Fuhrman JA, Rivero-Calle S, Gómez-Consarnau L. Proteorhodopsins dominate the expression of phototrophic mechanisms in seasonal and dynamic marine picoplankton communities. Peerj. 6: e5798. PMID 30370186 DOI: 10.7717/Peerj.5798 |
0.335 |
|
| 2018 |
Ahlgren NA, Fuchsman CA, Rocap G, Fuhrman JA. Discovery of several novel, widespread, and ecologically distinct marine Thaumarchaeota viruses that encode amoC nitrification genes. The Isme Journal. PMID 30315316 DOI: 10.1038/S41396-018-0289-4 |
0.429 |
|
| 2018 |
Monteverde D, Sylvan J, Suffridge C, Baronas JJ, Fichot E, Fuhrman J, Berelson WM, Sanudo-Wilhelmy S. Distribution of extracellular flavins in a coastal marine basin and their relationship to redox gradients and microbial community members. Environmental Science & Technology. PMID 30257556 DOI: 10.1021/Acs.Est.8B02822 |
0.398 |
|
| 2018 |
Brown MV, van de Kamp J, Ostrowski M, Seymour JR, Ingleton T, Messer LF, Jeffries T, Siboni N, Laverock B, Bibiloni-Isaksson J, Nelson TM, Coman F, Davies CH, Frampton D, Rayner M, ... ... Fuhrman JA, et al. Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative. Scientific Data. 5: 180130. PMID 30015804 DOI: 10.1038/Sdata.2018.130 |
0.42 |
|
| 2018 |
Needham DM, Fichot EB, Wang E, Berdjeb L, Cram JA, Fichot CG, Fuhrman JA. Dynamics and interactions of highly resolved marine plankton via automated high-frequency sampling. The Isme Journal. PMID 29899514 DOI: 10.1038/S41396-018-0169-Y |
0.369 |
|
| 2018 |
Hernando-Morales V, Varela MM, Needham DM, Cram J, Fuhrman JA, Teira E. Vertical and Seasonal Patterns Control Bacterioplankton Communities at Two Horizontally Coherent Coastal Upwelling Sites off Galicia (NW Spain). Microbial Ecology. PMID 29675703 DOI: 10.1007/S00248-018-1179-Z |
0.443 |
|
| 2018 |
Gómez-Consarnau L, Sachdeva R, Gifford SM, Cutter LS, Fuhrman JA, Sañudo-Wilhelmy SA, Moran MA. Mosaic patterns of B-vitamin synthesis and utilization in a natural marine microbial community. Environmental Microbiology. PMID 29659156 DOI: 10.1111/1462-2920.14133 |
0.323 |
|
| 2018 |
Berdjeb L, Parada A, Needham DM, Fuhrman JA. Short-term dynamics and interactions of marine protist communities during the spring-summer transition. The Isme Journal. PMID 29599520 DOI: 10.1038/S41396-018-0097-X |
0.442 |
|
| 2017 |
Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vázquez-Baeza Y, González A, ... ... Fuhrman JA, et al. A communal catalogue reveals Earth's multiscale microbial diversity. Nature. PMID 29088705 DOI: 10.1038/Nature24621 |
0.421 |
|
| 2017 |
Lu YY, Lv J, Fuhrman JA, Sun F. Towards enhanced and interpretable clustering/classification in integrative genomics. Nucleic Acids Research. PMID 28977511 DOI: 10.1093/Nar/Gkx767 |
0.3 |
|
| 2017 |
Wigington CH, Sonderegger D, Brussaard CPD, Buchan A, Finke JF, Fuhrman JA, Lennon JT, Middelboe M, Suttle CA, Stock C, Wilson WH, Wommack KE, Wilhelm SW, Weitz JS. Author Correction: Re-examination of the relationship between marine virus and microbial cell abundances. Nature Microbiology. PMID 28974689 DOI: 10.1038/S41564-017-0042-1 |
0.75 |
|
| 2017 |
Parada AE, Fuhrman JA. Marine archaeal dynamics and interactions with the microbial community over 5 years from surface to seafloor. The Isme Journal. PMID 28731479 DOI: 10.1038/Ismej.2017.104 |
0.457 |
|
| 2017 |
Ren J, Ahlgren NA, Lu YY, Fuhrman JA, Sun F. VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data. Microbiome. 5: 69. PMID 28683828 DOI: 10.1186/S40168-017-0283-5 |
0.353 |
|
| 2017 |
Ahlgren NA, Chen Y, Needham DM, Parada AE, Sachdeva R, Trinh V, Chen T, Fuhrman JA. Genome and epigenome of a novel marine Thaumarchaeota strain suggest viral infection, phosphorothioation DNA modification, and multiple restriction systems. Environmental Microbiology. PMID 28418097 DOI: 10.1111/1462-2920.13768 |
0.325 |
|
| 2017 |
Needham DM, Sachdeva R, Fuhrman JA. Ecological dynamics and co-occurrence among marine phytoplankton, bacteria and myoviruses shows microdiversity matters. The Isme Journal. PMID 28398348 DOI: 10.1038/Ismej.2017.29 |
0.428 |
|
| 2017 |
Zhang M, Yang L, Ren J, Ahlgren NA, Fuhrman JA, Sun F. Prediction of virus-host infectious association by supervised learning methods. Bmc Bioinformatics. 18: 60. PMID 28361670 DOI: 10.1186/S12859-017-1473-7 |
0.351 |
|
| 2016 |
Ahlgren NA, Ren J, Lu YY, Fuhrman JA, Sun F. Alignment-free $d_2^*$ oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences. Nucleic Acids Research. PMID 27899557 DOI: 10.1093/Nar/Gkw1002 |
0.341 |
|
| 2016 |
Needham DM, Fuhrman JA. Pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom. Nature Microbiology. 1: 16005. PMID 27572439 DOI: 10.1038/Nmicrobiol.2016.5 |
0.435 |
|
| 2016 |
Wigington CH, Sonderegger D, Brussaard CP, Buchan A, Finke JF, Fuhrman JA, Lennon JT, Middelboe M, Suttle CA, Stock C, Wilson WH, Wommack KE, Wilhelm SW, Weitz JS. Re-examination of the relationship between marine virus and microbial cell abundances. Nature Microbiology. 1: 15024. PMID 27572161 DOI: 10.1038/Nmicrobiol.2015.24 |
0.764 |
|
| 2016 |
Bálint M, Bahram M, Eren AM, Faust K, Fuhrman JA, Lindahl B, O'Hara RB, Öpik M, Sogin ML, Unterseher M, Tedersoo L. Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes. Fems Microbiology Reviews. PMID 27358393 DOI: 10.1093/Femsre/Fuw017 |
0.355 |
|
| 2016 |
Lu YY, Chen T, Fuhrman JA, Sun F. COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment, and paired-end read LinkAge. Bioinformatics (Oxford, England). PMID 27256312 DOI: 10.1093/Bioinformatics/Btw290 |
0.339 |
|
| 2016 |
Weiss S, Van Treuren W, Lozupone C, Faust K, Friedman J, Deng Y, Xia LC, Xu ZZ, Ursell L, Alm EJ, Birmingham A, Cram JA, Fuhrman JA, Raes J, Sun F, et al. Correlation detection strategies in microbial data sets vary widely in sensitivity and precision. The Isme Journal. PMID 26905627 DOI: 10.1038/Ismej.2015.235 |
0.377 |
|
| 2016 |
Cram JA, Parada AE, Fuhrman JA. Dilution reveals how viral lysis and grazing shape microbial communities Limnology and Oceanography. 61: 889-905. DOI: 10.1002/Lno.10259 |
0.46 |
|
| 2015 |
Parada AE, Needham DM, Fuhrman JA. Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples. Environmental Microbiology. PMID 26271760 DOI: 10.1111/1462-2920.13023 |
0.335 |
|
| 2015 |
Kopf A, Bicak M, Kottmann R, Schnetzer J, Kostadinov I, Lehmann K, Fernandez-Guerra A, Jeanthon C, Rahav E, Ullrich M, Wichels A, Gerdts G, Polymenakou P, Kotoulas G, Siam R, ... ... Fuhrman JA, et al. The ocean sampling day consortium. Gigascience. 4: 27. PMID 26097697 DOI: 10.1186/S13742-015-0066-5 |
0.684 |
|
| 2015 |
Cram JA, Xia LC, Needham DM, Sachdeva R, Sun F, Fuhrman JA. Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes. The Isme Journal. PMID 25989373 DOI: 10.1038/Ismej.2015.76 |
0.457 |
|
| 2015 |
Fuhrman JA, Cram JA, Needham DM. Marine microbial community dynamics and their ecological interpretation. Nature Reviews. Microbiology. 13: 133-46. PMID 25659323 DOI: 10.1038/Nrmicro3417 |
0.433 |
|
| 2015 |
Weitz JS, Stock CA, Wilhelm SW, Bourouiba L, Coleman ML, Buchan A, Follows MJ, Fuhrman JA, Jover LF, Lennon JT, Middelboe M, Sonderegger DL, Suttle CA, Taylor BP, Frede Thingstad T, et al. A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes. The Isme Journal. 9: 1352-64. PMID 25635642 DOI: 10.1038/Ismej.2014.220 |
0.778 |
|
| 2015 |
Cram JA, Chow CE, Sachdeva R, Needham DM, Parada AE, Steele JA, Fuhrman JA. Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years. The Isme Journal. 9: 563-80. PMID 25203836 DOI: 10.1038/Ismej.2014.153 |
0.641 |
|
| 2015 |
Romero I, Jacobson-Meyers M, Fuhrman J, Capone D. Phylogenetic Diversity of Diazotrophs along an Experimental Nutrient Gradient in Mangrove Sediments Journal of Marine Science and Engineering. 3: 699-719. DOI: 10.3390/Jmse3030699 |
0.43 |
|
| 2014 |
Chow CE, Kim DY, Sachdeva R, Caron DA, Fuhrman JA. Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists. The Isme Journal. 8: 816-29. PMID 24196323 DOI: 10.1038/Ismej.2013.199 |
0.455 |
|
| 2013 |
Hatosy SM, Martiny JB, Sachdeva R, Steele J, Fuhrman JA, Martiny AC. Beta diversity of marine bacteria depends on temporal scale. Ecology. 94: 1898-904. PMID 24279260 DOI: 10.1890/12-2125.1 |
0.647 |
|
| 2013 |
Riemann B, Fuhrman J, Azam F. Bacterial secondary production in freshwater measured by(3)H-thymidine incorporation method. Microbial Ecology. 8: 101-13. PMID 24225805 DOI: 10.1007/Bf02010444 |
0.558 |
|
| 2013 |
Pagarete A, Chow CET, Johannessen T, Fuhrman JA, Thingstad TF, Sandaa RA. Strong seasonality and interannual recurrence in marine myovirus communities Applied and Environmental Microbiology. 79: 6253-6259. PMID 23913432 DOI: 10.1128/Aem.01075-13 |
0.422 |
|
| 2013 |
Harwood VJ, Boehm AB, Sassoubre LM, Vijayavel K, Stewart JR, Fong TT, Caprais MP, Converse RR, Diston D, Ebdon J, Fuhrman JA, Gourmelon M, Gentry-Shields J, Griffith JF, Kashian DR, et al. Performance of viruses and bacteriophages for fecal source determination in a multi-laboratory, comparative study. Water Research. 47: 6929-43. PMID 23886543 DOI: 10.1016/J.Watres.2013.04.064 |
0.335 |
|
| 2013 |
Chow CE, Sachdeva R, Cram JA, Steele JA, Needham DM, Patel A, Parada AE, Fuhrman JA. Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight. The Isme Journal. 7: 2259-73. PMID 23864126 DOI: 10.1038/Ismej.2013.122 |
0.667 |
|
| 2013 |
Riedel T, Gómez-Consarnau L, Tomasch J, Martin M, Jarek M, González JM, Spring S, Rohlfs M, Brinkhoff T, Cypionka H, Göker M, Fiebig A, Klein J, Goesmann A, Fuhrman JA, et al. Genomics and physiology of a marine flavobacterium encoding a proteorhodopsin and a xanthorhodopsin-like protein. Plos One. 8: e57487. PMID 23526944 DOI: 10.1371/Journal.Pone.0057487 |
0.325 |
|
| 2013 |
Needham DM, Chow CE, Cram JA, Sachdeva R, Parada A, Fuhrman JA. Short-term observations of marine bacterial and viral communities: patterns, connections and resilience. The Isme Journal. 7: 1274-85. PMID 23446831 DOI: 10.1038/Ismej.2013.19 |
0.461 |
|
| 2013 |
Amend AS, Oliver TA, Amaral-Zettler LA, Boetius A, Fuhrman JA, Horner-Devine MC, Huse SM, Welch DBM, Martiny AC, Ramette A, Zinger L, Sogin ML, Martiny JBH. Macroecological patterns of marine bacteria on a global scale Journal of Biogeography. 40: 800-811. DOI: 10.1111/Jbi.12034 |
0.47 |
|
| 2013 |
Fuhrman JA, Needham DM, Hewson I. Plankton Viruses Reference Module in Earth Systems and Environmental Sciences. DOI: 10.1016/B978-0-12-409548-9.04291-3 |
0.6 |
|
| 2013 |
Fuhrman J, Follows M, Forde S. Applying “-omics” Data in Marine Microbial Oceanography Eos, Transactions American Geophysical Union. 94: 241-241. DOI: 10.1002/2013Eo270006 |
0.415 |
|
| 2012 |
Fuhrman JA. Metagenomics and its connection to microbial community organization. F1000 Biology Reports. 4: 15. PMID 22912649 DOI: 10.3410/B4-15 |
0.411 |
|
| 2012 |
Brown MV, Lauro FM, DeMaere MZ, Muir L, Wilkins D, Thomas T, Riddle MJ, Fuhrman JA, Andrews-Pfannkoch C, Hoffman JM, McQuaid JB, Allen A, Rintoul SR, Cavicchioli R. Global biogeography of SAR11 marine bacteria. Molecular Systems Biology. 8: 595. PMID 22806143 DOI: 10.1038/Msb.2012.28 |
0.365 |
|
| 2012 |
Knight R, Jansson J, Field D, Fierer N, Desai N, Fuhrman JA, Hugenholtz P, van der Lelie D, Meyer F, Stevens R, Bailey MJ, Gordon JI, Kowalchuk GA, Gilbert JA. Unlocking the potential of metagenomics through replicated experimental design. Nature Biotechnology. 30: 513-20. PMID 22678395 DOI: 10.1038/Nbt.2235 |
0.357 |
|
| 2012 |
Chang Q, Luan Y, Chen T, Fuhrman JA, Sun F. Computational methods for the analysis of tag sequences in metagenomics studies. Frontiers in Bioscience (Scholar Edition). 4: 1333-43. PMID 22652875 DOI: 10.2741/S335 |
0.368 |
|
| 2012 |
Chow CE, Fuhrman JA. Seasonality and monthly dynamics of marine myovirus communities. Environmental Microbiology. 14: 2171-83. PMID 22507260 DOI: 10.1111/J.1462-2920.2012.02744.X |
0.421 |
|
| 2012 |
Freitas S, Hatosy S, Fuhrman JA, Huse SM, Welch DB, Sogin ML, Martiny AC. Global distribution and diversity of marine Verrucomicrobia. The Isme Journal. 6: 1499-505. PMID 22318305 DOI: 10.1038/Ismej.2012.3 |
0.459 |
|
| 2012 |
Gilbert JA, Steele JA, Caporaso JG, Steinbrück L, Reeder J, Temperton B, Huse S, McHardy AC, Knight R, Joint I, Somerfield P, Fuhrman JA, Field D. Defining seasonal marine microbial community dynamics. The Isme Journal. 6: 298-308. PMID 21850055 DOI: 10.1038/Ismej.2011.107 |
0.685 |
|
| 2012 |
Romero IC, Jacobson M, Fuhrman JA, Fogel M, Capone DG. Long-term nitrogen and phosphorus fertilization effects on N 2 fixation rates and nifH gene community patterns in mangrove sediments Marine Ecology. 33: 117-127. DOI: 10.1111/J.1439-0485.2011.00465.X |
0.359 |
|
| 2011 |
Xia LC, Steele JA, Cram JA, Cardon ZG, Simmons SL, Vallino JJ, Fuhrman JA, Sun F. Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates. Bmc Systems Biology. 5: S15. PMID 22784572 DOI: 10.1186/1752-0509-5-S2-S15 |
0.616 |
|
| 2011 |
Xia LC, Cram JA, Chen T, Fuhrman JA, Sun F. Accurate genome relative abundance estimation based on shotgun metagenomic reads. Plos One. 6: e27992. PMID 22162995 DOI: 10.1371/Journal.Pone.0027992 |
0.363 |
|
| 2011 |
Zinger L, Amaral-Zettler LA, Fuhrman JA, Horner-Devine MC, Huse SM, Welch DB, Martiny JB, Sogin M, Boetius A, Ramette A. Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems. Plos One. 6: e24570. PMID 21931760 DOI: 10.1371/Journal.Pone.0024570 |
0.424 |
|
| 2011 |
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Fuhrman JA, et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology. 29: 415-20. PMID 21552244 DOI: 10.1038/Nbt.1823 |
0.679 |
|
| 2011 |
Steele JA, Countway PD, Xia L, Vigil PD, Beman JM, Kim DY, Chow CE, Sachdeva R, Jones AC, Schwalbach MS, Rose JM, Hewson I, Patel A, Sun F, Caron DA, ... Fuhrman JA, et al. Marine bacterial, archaeal and protistan association networks reveal ecological linkages. The Isme Journal. 5: 1414-25. PMID 21430787 DOI: 10.1038/Ismej.2011.24 |
0.814 |
|
| 2011 |
Beman JM, Steele JA, Fuhrman JA. Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California. The Isme Journal. 5: 1077-85. PMID 21228895 DOI: 10.1038/Ismej.2010.204 |
0.649 |
|
| 2011 |
Danovaro R, Corinaldesi C, Dell'anno A, Fuhrman JA, Middelburg JJ, Noble RT, Suttle CA. Marine viruses and global climate change. Fems Microbiology Reviews. 35: 993-1034. PMID 21204862 DOI: 10.1111/J.1574-6976.2010.00258.X |
0.687 |
|
| 2011 |
Beman JM, Chow CE, King AL, Feng Y, Fuhrman JA, Andersson A, Bates NR, Popp BN, Hutchins DA. Global declines in oceanic nitrification rates as a consequence of ocean acidification. Proceedings of the National Academy of Sciences of the United States of America. 108: 208-13. PMID 21173255 DOI: 10.1073/Pnas.1011053108 |
0.328 |
|
| 2011 |
Fuhrman JA. Oceans of crenarchaeota: A personal history describing this paradigm shift Microbe. 6: 531-537. DOI: 10.1128/Microbe.6.531.1 |
0.3 |
|
| 2010 |
Beman JM, Sachdeva R, Fuhrman JA. Population ecology of nitrifying archaea and bacteria in the Southern California Bight. Environmental Microbiology. 12: 1282-92. PMID 20192962 DOI: 10.1111/J.1462-2920.2010.02172.X |
0.388 |
|
| 2010 |
Griffith JF, Schiff KC, Lyon GS, Fuhrman JA. Microbiological water quality at non-human influenced reference beaches in southern California during wet weather. Marine Pollution Bulletin. 60: 500-8. PMID 20015517 DOI: 10.1016/J.Marpolbul.2009.11.015 |
0.358 |
|
| 2010 |
Bertics VJ, Sohm JA, Treude T, Chow CET, Capone DG, Fuhrman JA, Ziebis W. Burrowing deeper into benthic nitrogen cycling: The impact of Bioturbation on nitrogen fixation coupled to sulfate reduction Marine Ecology Progress Series. 409: 1-15. DOI: 10.3354/Meps08639 |
0.315 |
|
| 2010 |
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Fuhrman J, et al. The “Minimum Information about an ENvironmental Sequence” (MIENS) specification Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.5252.1 |
0.675 |
|
| 2009 |
Brown MV, Philip GK, Bunge JA, Smith MC, Bissett A, Lauro FM, Fuhrman JA, Donachie SP. Microbial community structure in the North Pacific ocean. The Isme Journal. 3: 1374-86. PMID 19626056 DOI: 10.1038/Ismej.2009.86 |
0.444 |
|
| 2009 |
Fuhrman JA. Microbial community structure and its functional implications. Nature. 459: 193-9. PMID 19444205 DOI: 10.1038/Nature08058 |
0.426 |
|
| 2009 |
Böer SI, Hedtkamp SI, van Beusekom JE, Fuhrman JA, Boetius A, Ramette A. Time- and sediment depth-related variations in bacterial diversity and community structure in subtidal sands. The Isme Journal. 3: 780-91. PMID 19340087 DOI: 10.1038/Ismej.2009.29 |
0.458 |
|
| 2008 |
Fuhrman JA, Steele JA, Hewson I, Schwalbach MS, Brown MV, Green JL, Brown JH. A latitudinal diversity gradient in planktonic marine bacteria. Proceedings of the National Academy of Sciences of the United States of America. 105: 7774-8. PMID 18509059 DOI: 10.1073/Pnas.0803070105 |
0.807 |
|
| 2008 |
Fuhrman JA, Schwalbach MS, Stingl U. Proteorhodopsins: an array of physiological roles? Nature Reviews. Microbiology. 6: 488-94. PMID 18475306 DOI: 10.1038/Nrmicro1893 |
0.737 |
|
| 2008 |
Fuhrman JA, Steele JA. Community structure of marine bacterioplankton: Patterns, networks, and relationships to function Aquatic Microbial Ecology. 53: 69-81. DOI: 10.3354/Ame01222 |
0.677 |
|
| 2008 |
Hewson I, Fuhrman JA. Viruses, Bacteria, and the Microbial Loop Nitrogen in the Marine Environment. 1097-1134. DOI: 10.1016/B978-0-12-372522-6.00025-6 |
0.629 |
|
| 2007 |
Horner-Devine MC, Silver JM, Leibold MA, Bohannan BJ, Colwell RK, Fuhrman JA, Green JL, Kuske CR, Martiny JB, Muyzer G, Ovreås L, Reysenbach AL, Smith VH. A comparison of taxon co-occurrence patterns for macro- and microorganisms. Ecology. 88: 1345-53. PMID 17601127 DOI: 10.1890/06-0286 |
0.427 |
|
| 2007 |
Patel A, Noble RT, Steele JA, Schwalbach MS, Hewson I, Fuhrman JA. Virus and prokaryote enumeration from planktonic aquatic environments by epifluorescence microscopy with SYBR Green I. Nature Protocols. 2: 269-76. PMID 17406585 DOI: 10.1038/Nprot.2007.6 |
0.785 |
|
| 2007 |
Hewson I, Jacobson Meyers ME, Fuhrman JA. Diversity and biogeography of bacterial assemblages in surface sediments across the San Pedro Basin, Southern California Borderlands. Environmental Microbiology. 9: 923-33. PMID 17359264 DOI: 10.1111/J.1462-2920.2006.01214.X |
0.669 |
|
| 2007 |
Hewson I, Fuhrman JA. Characterization of lysogens in bacterioplankton assemblages of the southern California borderland. Microbial Ecology. 53: 631-8. PMID 17345141 DOI: 10.1007/S00248-006-9148-3 |
0.678 |
|
| 2007 |
Hewson I, Fuhrman JA. Covariation of viral parameters with bacterial assemblage richness and diversity in the water column and sediments Deep-Sea Research Part I: Oceanographic Research Papers. 54: 811-830. DOI: 10.1016/j.dsr.2007.02.003 |
0.671 |
|
| 2006 |
Fuhrman JA, Hewson I, Schwalbach MS, Steele JA, Brown MV, Naeem S. Annually reoccurring bacterial communities are predictable from ocean conditions. Proceedings of the National Academy of Sciences of the United States of America. 103: 13104-9. PMID 16938845 DOI: 10.1073/Pnas.0602399103 |
0.807 |
|
| 2006 |
Ruan Q, Dutta D, Schwalbach MS, Steele JA, Fuhrman JA, Sun F. Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors. Bioinformatics (Oxford, England). 22: 2532-8. PMID 16882654 DOI: 10.1093/Bioinformatics/Btl417 |
0.802 |
|
| 2006 |
Ruan Q, Steele JA, Schwalbach MS, Fuhrman JA, Sun F. A dynamic programming algorithm for binning microbial community profiles. Bioinformatics (Oxford, England). 22: 1508-14. PMID 16567364 DOI: 10.1093/Bioinformatics/Btl114 |
0.797 |
|
| 2006 |
Noble RT, Griffith JF, Blackwood AD, Fuhrman JA, Gregory JB, Hernandez X, Liang X, Bera AA, Schiff K. Multitiered approach using quantitative PCR to track sources of fecal pollution affecting Santa Monica Bay, California. Applied and Environmental Microbiology. 72: 1604-12. PMID 16461716 DOI: 10.1128/Aem.72.2.1604-1612.2006 |
0.332 |
|
| 2006 |
Hewson I, Fuhrman JA. Improved strategy for comparing microbial assemblage fingerprints. Microbial Ecology. 51: 147-53. PMID 16437287 DOI: 10.1007/S00248-005-0144-9 |
0.635 |
|
| 2006 |
Martiny JB, Bohannan BJ, Brown JH, Colwell RK, Fuhrman JA, Green JL, Horner-Devine MC, Kane M, Krumins JA, Kuske CR, Morin PJ, Naeem S, Ovreås L, Reysenbach AL, Smith VH, et al. Microbial biogeography: putting microorganisms on the map. Nature Reviews. Microbiology. 4: 102-12. PMID 16415926 DOI: 10.1038/Nrmicro1341 |
0.351 |
|
| 2006 |
Hewson I, Steele JA, Capone DG, Fuhrman JA. Remarkable heterogeneity in meso- and bathypelagic bacterioplankton assemblage composition Limnology and Oceanography. 51: 1274-1283. DOI: 10.4319/Lo.2006.51.3.1274 |
0.717 |
|
| 2006 |
Hewson I, Steele JA, Capone DG, Fuhrman JA. Temporal and spatial scales of variation in bacterioplankton assemblages of oligotrophic surface waters Marine Ecology Progress Series. 311: 67-77. DOI: 10.3354/Meps311067 |
0.756 |
|
| 2006 |
Hewson I, Fuhrman JA. Spatial and vertical biogeography of coral reef sediment bacterial and diazotroph communities Marine Ecology Progress Series. 306: 79-86. DOI: 10.3354/Meps306079 |
0.684 |
|
| 2006 |
Hewson I, Capone DG, Steele JA, Fuhrman JA. Influence of Amazon and Orinoco offshore surface water plumes on oligotrophic bacterioplankton diversity in the west tropical Atlantic Aquatic Microbial Ecology. 43: 11-22. DOI: 10.3354/Ame043011 |
0.734 |
|
| 2006 |
Honjo M, Matsui K, Ueki M, Nakamura R, Fuhrman JA, Kawabata Z. Diversity of virus-like agents killing Microcystis aeruginosa in a hyper-eutrophic pond Journal of Plankton Research. 28: 407-412. DOI: 10.1093/Plankt/Fbi128 |
0.34 |
|
| 2006 |
Hewson I, Winget DM, Williamson KE, Fuhrman JA, Wommack KE. Viral and bacterial assemblage covariance in oligotrophic waters of the West Florida Shelf (Gulf of Mexico) Journal of the Marine Biological Association of the United Kingdom. 86: 591-603. DOI: 10.1017/S0025315406013506 |
0.813 |
|
| 2006 |
Hewson I, Fuhrman JA. Viral impacts upon marine bacterioplankton assemblage structure Journal of the Marine Biological Association of the United Kingdom. 86: 577-589. DOI: 10.1017/S002531540601349X |
0.703 |
|
| 2005 |
Brown MV, Schwalbach MS, Hewson I, Fuhrman JA. Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series. Environmental Microbiology. 7: 1466-79. PMID 16104869 DOI: 10.1111/J.1462-2920.2005.00835.X |
0.812 |
|
| 2005 |
Fuhrman JA, Liang X, Noble RT. Rapid detection of enteroviruses in small volumes of natural waters by real-time quantitative reverse transcriptase PCR. Applied and Environmental Microbiology. 71: 4523-30. PMID 16085845 DOI: 10.1128/Aem.71.8.4523-4530.2005 |
0.334 |
|
| 2005 |
Oremland RS, Capone DG, Stolz JF, Fuhrman J. Whither or wither geomicrobiology in the era of 'community metagenomics'. Nature Reviews. Microbiology. 3: 572-8. PMID 15953928 DOI: 10.1038/Nrmicro1182 |
0.399 |
|
| 2005 |
Schwalbach MS, Fuhrman JA. Wide-ranging abundances of aerobic anoxygenic phototrophic bacteria in the world ocean revealed by epifluorescence microscopy and quantitative PCR Limnology and Oceanography. 50: 620-628. DOI: 10.4319/Lo.2005.50.2.0620 |
0.76 |
|
| 2005 |
Brown MV, Fuhrman JA. Marine bacterial microdiversity as revealed by internal transcribed spacer analysis Aquatic Microbial Ecology. 41: 15-23. DOI: 10.3354/Ame041015 |
0.367 |
|
| 2005 |
Schwalbach MS, Brown M, Fuhrman JA. Impact of light on marine bacterioplankton community structure Aquatic Microbial Ecology. 39: 235-245. DOI: 10.3354/Ame039235 |
0.763 |
|
| 2005 |
Steele JA, Ozis F, Fuhrman JA, Devinny JS. Structure of microbial communities in ethanol biofilters Chemical Engineering Journal. 113: 135-143. DOI: 10.1016/J.Cej.2005.04.011 |
0.637 |
|
| 2004 |
Hewson I, Fuhrman JA. Richness and diversity of bacterioplankton species along an estuarine gradient in Moreton Bay, Australia. Applied and Environmental Microbiology. 70: 3425-33. PMID 15184140 DOI: 10.1128/Aem.70.6.3425-3433.2004 |
0.687 |
|
| 2004 |
Hewson I, Govil SR, Capone DG, Carpenter EJ, Fuhrman JA. Evidence of Trichodesmium viral lysis and potential significance for biogeochemical cycling in the oligotrophic ocean Aquatic Microbial Ecology. 36: 1-8. DOI: 10.3354/Ame036001 |
0.646 |
|
| 2004 |
Schwalbach MS, Hewson I, Fuhrman JA. Viral effects on bacterial community composition in marine plankton microcosms Aquatic Microbial Ecology. 34: 117-127. DOI: 10.3354/Ame034117 |
0.819 |
|
| 2003 |
Field KG, Chern EC, Dick LK, Fuhrman J, Griffith J, Holden PA, LaMontagne MG, Le J, Olson B, Simonich MT. A comparative study of culture-independent, library-independent genotypic methods of fecal source tracking. Journal of Water and Health. 1: 181-94. PMID 15382723 DOI: 10.2166/Wh.2003.0020 |
0.304 |
|
| 2003 |
Hewson I, Vargo GA, Fuhrman JA. Bacterial diversity in shallow oligotrophic marine benthos and overlying waters: effects of virus infection, containment, and nutrient enrichment. Microbial Ecology. 46: 322-36. PMID 14502411 DOI: 10.1007/S00248-002-1067-3 |
0.705 |
|
| 2003 |
Hewson I, Fuhrman JA. Viriobenthos production and virioplankton sorptive scavenging by suspended sediment particles in coastal and pelagic waters. Microbial Ecology. 46: 337-47. PMID 14502409 DOI: 10.1007/S00248-002-1041-0 |
0.639 |
|
| 2003 |
Fuhrman J. Genome sequences from the sea. Nature. 424: 1001-2. PMID 12944945 DOI: 10.1038/4241001A |
0.307 |
|
| 2003 |
Jiang S, Fu W, Chu W, Fuhrman JA. The vertical distribution and diversity of marine bacteriophage at a station off Southern California Microbial Ecology. 45: 399-410. PMID 12704560 DOI: 10.1007/S00248-002-1059-3 |
0.425 |
|
| 2003 |
Fuhrman JA, Schwalbach M. Viral influence on aquatic bacterial communities Biological Bulletin. 204: 192-195. PMID 12700152 DOI: 10.2307/1543557 |
0.783 |
|
| 2003 |
Boehm AB, Fuhrman JA, Mrse RD, Grant SB. Tiered approach for identification of a human fecal pollution source at a recreational beach: case study at Avalon Bay, Catalina Island, California. Environmental Science & Technology. 37: 673-80. PMID 12636264 DOI: 10.1021/Es025934X |
0.347 |
|
| 2002 |
Fuhrman JA. Community structure and function in prokaryotic marine plankton. Antonie Van Leeuwenhoek. 81: 521-7. PMID 12448747 DOI: 10.1023/A:1020513506777 |
0.447 |
|
| 2002 |
Fuhrman JA, Griffith JF, Schwalbach MS. Prokaryotic and viral diversity patterns in marine plankton Ecological Research. 17: 183-194. DOI: 10.1046/J.1440-1703.2002.00478.X |
0.781 |
|
| 2001 |
Hewson I, O'Neil JM, Fuhrman JA, Dennison WC. Virus-like particle distribution and abundance in sediments and overlying waters along eutrophication gradients in two subtropical estuaries Limnology and Oceanography. 46: 1734-1746. DOI: 10.4319/Lo.2001.46.7.1734 |
0.659 |
|
| 2001 |
Noble RT, Fuhrman JA. Enteroviruses detected by reverse transcriptase polymerase chain reaction from the coastal waters of Santa Monica Bay, California: Low correlation to bacterial indicator levels Hydrobiologia. 460: 175-184. DOI: 10.1023/A:1013121416891 |
0.378 |
|
| 2000 |
Ouverney CC, Fuhrman JA. Marine planktonic archaea take up amino acids. Applied and Environmental Microbiology. 66: 4829-33. PMID 11055931 DOI: 10.1128/Aem.66.11.4829-4833.2000 |
0.431 |
|
| 1999 |
Gasol JM, Li Zweifel U, Peters F, Fuhrman JA, Hagström Å. Significance of size and nucleic acid content heterogeneity as measured by flow cytometry in natural planktonic bacteria Applied and Environmental Microbiology. 65: 4475-4483. PMID 10508078 DOI: 10.1128/Aem.65.10.4475-4483.1999 |
0.42 |
|
| 1999 |
Fuhrman JA. Marine viruses and their biogeochemical and ecological effects Nature. 399: 541-548. PMID 10376593 DOI: 10.1038/21119 |
0.385 |
|
| 1999 |
Ouverney CC, Fuhrman JA. Combined microautoradiography-16S rRNA probe technique for determination of radioisotope uptake by specific microbial cell types in situ. Applied and Environmental Microbiology. 65: 1746-52. PMID 10103276 DOI: 10.1128/Aem.65.4.1746-1752.1999 |
0.374 |
|
| 1999 |
Noble RT, Fuhrman JA. Breakdown and microbial uptake of marine viruses and other lysis products Aquatic Microbial Ecology. 20: 1-11. DOI: 10.3354/Ame020001 |
0.367 |
|
| 1999 |
Noble RT, Middelboe M, Fuhrman JA. Effects of viral enrichment on the mortality and growth of heterotrophic bacterioplankton Aquatic Microbial Ecology. 18: 1-13. DOI: 10.3354/Ame018001 |
0.379 |
|
| 1998 |
Noble RT, Fuhrman JA. Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria Aquatic Microbial Ecology. 14: 113-118. DOI: 10.3354/Ame014113 |
0.4 |
|
| 1998 |
Fuhrman JA, Campbell U. Microbial microdiversity Nature. 393: 410-411. DOI: 10.1038/30839 |
0.318 |
|
| 1998 |
Fuhrman JA, Ouverney CC. Marine microbial diversity studied via 16S rRNA sequences: Cloning results from coastal waters and counting of native archaea with fluorescent single cell probes Aquatic Ecology. 32: 3-15. DOI: 10.1023/A:1009974817127 |
0.393 |
|
| 1997 |
Karner M, Fuhrman JA. Determination of active marine bacterioplankton: A comparison of universal 16S rRNA probes, autoradiography, and nucleoid staining Applied and Environmental Microbiology. 63: 1208-1213. DOI: 10.1128/Aem.63.4.1208-1213.1997 |
0.337 |
|
| 1997 |
Noble RT, Fuhrman JA. Virus decay and its causes in coastal waters Applied and Environmental Microbiology. 63: 77-83. DOI: 10.1128/Aem.63.1.77-83.1997 |
0.367 |
|
| 1995 |
Fuhrman JA, McCallum K, Davis AA. Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans. Applied and Environmental Microbiology. 61: 4517. PMID 8534122 DOI: 10.1128/Aem.61.12.4517-4517.1995 |
0.358 |
|
| 1995 |
Fuhrman JA, Noble RT. Viruses and protists cause similar bacterial mortality in coastal seawater Limnology and Oceanography. 40: 1236-1242. DOI: 10.4319/Lo.1995.40.7.1236 |
0.364 |
|
| 1994 |
Fuhrman JA, Lee SH, Masuchi Y, Davis AA, Wilcox RM. Characterization of marine prokaryotic communities via DNA and RNA. Microbial Ecology. 28: 133-45. PMID 24186438 DOI: 10.1007/Bf00166801 |
0.451 |
|
| 1994 |
Wilcox RM, Fuhrman JA. Bacterial viruses in coastal seawater: Lytic rather than lysogenic production Marine Ecology Progress Series. 114: 35-46. DOI: 10.3354/Meps114035 |
0.408 |
|
| 1993 |
Proctor LM, Okubo A, Fuhrman JA. Calibrating estimates of phage-induced mortality in marine bacteria: Ultrastructural studies of marine bacteriophage development from one-step growth experiments. Microbial Ecology. 25: 161-82. PMID 24189813 DOI: 10.1007/Bf00177193 |
0.715 |
|
| 1993 |
Fuhrman J, Suttle C. Viruses in Marine Planktonic Systems Oceanography. 6: 51-63. DOI: 10.5670/Oceanog.1993.14 |
0.658 |
|
| 1992 |
Fuhrman JA, McCallum K, Davis AA. Novel major archaebacterial group from marine plankton. Nature. 356: 148-9. PMID 1545865 DOI: 10.1038/356148A0 |
0.405 |
|
| 1992 |
Proctor LM, Fuhrman JA. Mortality of marine bacteria in response to enrichments of the virus size fraction from seawater Marine Ecology Progress Series. 87: 283-293. DOI: 10.3354/Meps087283 |
0.709 |
|
| 1992 |
Kristiansen K, Nielsen H, Riemann B, Fuhrman JA. Growth efficiencies of freshwater bacterioplankton Microbial Ecology. 24: 145-160. DOI: 10.1007/Bf00174451 |
0.349 |
|
| 1991 |
Sanghoon Lee, Fuhrman JA. Spatial and temporal variation of natural bacterioplankton assemblages studied by total genomic DNA cross-hybridization Limnology &Amp; Oceanography. 36: 1277-1287. DOI: 10.4319/Lo.1991.36.7.1277 |
0.378 |
|
| 1991 |
Glibert PM, Garside C, Fuhrman JA, Roman MR. Time-dependent coupling of inorganic and organic nitrogen uptake and regeneration in the plume of the Chesapeake Bay estuary and its regulation by large heterotrophs Limnology &Amp; Oceanography. 36: 895-909. DOI: 10.4319/Lo.1991.36.5.0895 |
0.345 |
|
| 1991 |
Suttle C, Chan A, Fuhrman J. Dissolved free amino acids in the Sargasso Sea: uptake and respiration rates, turnover times, and concentrations Marine Ecology Progress Series. 70: 189-199. DOI: 10.3354/Meps070189 |
0.677 |
|
| 1991 |
Proctor LM, Fuhrman JA. Roles of viral infection in organic particle flux Marine Ecology Progress Series. 69: 133-142. DOI: 10.3354/Meps069133 |
0.664 |
|
| 1990 |
Lee S, Fuhrman JA. DNA hybridization to compare species compositions of natural bacterioplankton assemblages Applied and Environmental Microbiology. 56: 739-746. PMID 2317044 DOI: 10.1128/Aem.56.3.739-746.1990 |
0.362 |
|
| 1990 |
Suttle CA, Fuhrman JA, Capone DG. Rapid ammonium cycling and concentration-dependent partitioning of ammonium and phosphate: implications for carbon transfer in planktonic communities Limnology & Oceanography. 35: 424-433. DOI: 10.4319/Lo.1990.35.2.0424 |
0.689 |
|
| 1990 |
Fuhrman J. Dissolved free amino acid cycling in an estuarine outflow plume Marine Ecology Progress Series. 66: 197-203. DOI: 10.3354/Meps066197 |
0.363 |
|
| 1990 |
McManus G, Fuhrman J. Mesoscale and seasonal variability of heterotrophic nanoflagellate abundance in an estuarine outflow plume Marine Ecology Progress Series. 61: 207-213. DOI: 10.3354/Meps061207 |
0.304 |
|
| 1990 |
Proctor LM, Fuhrman JA. Viral mortality of marine bacteria and cyanobacteria Nature. 343: 60-62. DOI: 10.1038/343060A0 |
0.718 |
|
| 1989 |
Fuhrman J, Sleeter T, Carlson C, Proctor L. Dominance of bacterial biomass in the Sargasso Sea and its ecological implications Marine Ecology Progress Series. 57: 207-217. DOI: 10.3354/Meps057207 |
0.724 |
|
| 1988 |
Fuhrman JA, Comeau DE, Hagström A, Chan AM. Extraction from natural planktonic microorganisms of DNA suitable for molecular biological studies. Applied and Environmental Microbiology. 54: 1426-9. PMID 16347652 DOI: 10.1128/Aem.54.6.1426-1429.1988 |
0.304 |
|
| 1988 |
Hudak J, McDaniel J, Lee S, Fuhrman J. Mineralization potentials of aromatic hydrocarbons by estuarine microorganisms: variations with season, location, and bacterioplankton production Marine Ecology Progress Series. 47: 97-102. DOI: 10.3354/Meps047097 |
0.314 |
|
| 1988 |
Fuhrman J, Horrigan S, Capone D. Use of 13N as tracer for bacterial and algal uptake of ammonium from sea-water Marine Ecology Progress Series. 45: 271-278. DOI: 10.3354/Meps045271 |
0.313 |
|
| 1988 |
McManus GB, Fuhrman JA. Control of marine bacterioplankton populations: Measurement and significance of grazing Hydrobiologia. 159: 51-62. DOI: 10.1007/Bf00007367 |
0.392 |
|
| 1987 |
Lee S, Fuhrman JA. Relationships between Biovolume and Biomass of Naturally Derived Marine Bacterioplankton. Applied and Environmental Microbiology. 53: 1298-1303. PMID 16347362 DOI: 10.1128/Aem.53.6.1298-1303.1987 |
0.326 |
|
| 1987 |
Boicourt WC, Chao S, Ducklow HW, Glibert PM, Malone TC, Roman MR, Sanford LP, Fuhrman JA, Garside C, Garvine RW. Physics and microbial ecology of a buoyant estuarine plume on the continental shelf Eos, Transactions American Geophysical Union. 68: 666. DOI: 10.1029/Eo068I031P00666 |
0.341 |
|
| 1986 |
Riemann B, Jørgensen NO, Lampert W, Fuhrman JA. Zooplankton induced changes in dissolved free amino acids and in production rates of freshwater bacteria. Microbial Ecology. 12: 247-58. PMID 24212678 DOI: 10.1007/Bf02011168 |
0.361 |
|
| 1986 |
Fuhrman JA, Ducklow HW, Kirchman DL, McManus GB. Adenine and total microbial production: A reply Limnology and Oceanography. 31: 1395-1400. DOI: 10.4319/Lo.1986.31.6.1395 |
0.302 |
|
| 1986 |
Fuhrman JA, Ducklow HW, Kirchman DL, Hudak J, McManus GB, Kramer J. Does adenine incorporation into nucleic acids measure total microbial production? Limnology & Oceanography. 31: 627-636. DOI: 10.4319/Lo.1986.31.3.0627 |
0.342 |
|
| 1986 |
Mcmanus GB, Fuhrman JA. Photosynthetic pigments in the ciliate Laboea strobila from Long Island Sound, USA Journal of Plankton Research. 8: 317-327. DOI: 10.1093/Plankt/8.2.317 |
0.314 |
|
| 1985 |
Fuhrman J, Eppley R, Hagstrom A, Azam F. Diel variations in bacterioplankton, phytoplankton, and related parameters in the Southern California Bight Marine Ecology Progress Series. 27: 9-20. DOI: 10.3354/Meps027009 |
0.564 |
|
| 1985 |
Mitchell JG, Okubo A, Fuhrman JA. Microzones surrounding phytoplankton form the basis for a stratified marine microbial ecosystem Nature. 316: 58-59. DOI: 10.1038/316058A0 |
0.407 |
|
| 1984 |
Ammerman J, Fuhrman J, Hagström Å, Azam F. Bacterioplankton growth in seawater: I. Growth kinetics and cellular characteristics in seawater cultures Marine Ecology Progress Series. 18: 31-39. DOI: 10.3354/Meps018031 |
0.7 |
|
| 1984 |
Riemann B, Nielsen P, Jeppesen M, Marcussen B, Fuhrman J. Diel changes in bacterial biomass and growth rates in coastal environments, determined by means of thymidine incorporation into DNA, frequency of dividing cells (FDC), and microautoradiography Marine Ecology Progress Series. 17: 227-235. DOI: 10.3354/Meps017227 |
0.317 |
|
| 1984 |
Fuhrman JA, McManus GB. Do bacteria-sized marine eukaryotes consume significant bacterial production? Science. 224: 1257-1260. DOI: 10.1126/Science.224.4654.1257 |
0.381 |
|
| 1983 |
Fuhrman J, Azam F. Adaptations of bacteria to marine subsurface waters studied by temperature response Marine Ecology Progress Series. 13: 95-98. DOI: 10.3354/Meps013095 |
0.514 |
|
| 1982 |
Fuhrman JA, Azam F. Thymidine incorporation as a measure of heterotrophic bacterioplankton production in marine surface waters: Evaluation and field results Marine Biology. 66: 109-120. DOI: 10.1007/Bf00397184 |
0.575 |
|
| 1981 |
Eppley R, Horrigan S, Fuhrman J, Brooks E, Price C, Sellner K. Origins of Dissolved Organic Matter in Southern California Coastal Waters: Experiments on the Role of Zooplankton Marine Ecology Progress Series. 6: 149-159. DOI: 10.3354/Meps006149 |
0.319 |
|
| 1981 |
Hodson RE, Azam F, Carlucci AF, Fuhrman JA, Karl DM, Holm-Hansen O. Microbial uptake of dissolved organic matter in Mcmurdo Sound, Antarctica Marine Biology. 61: 89-94. DOI: 10.1007/Bf00386648 |
0.644 |
|
| 1980 |
Fuhrman JA, Azam F. Bacterioplankton secondary production estimates for coastal waters of british columbia, antarctica, and california. Applied and Environmental Microbiology. 39: 1085-95. PMID 16345577 DOI: 10.1128/Aem.39.6.1085-1095.1980 |
0.55 |
|
| 1980 |
Hollibaugh JT, Fuhrman JA, Azam F. Radioactively labeling of natural assemblages of bacterioplankton for use in trophic studies1 Limnology and Oceanography. 25: 172-181. DOI: 10.4319/Lo.1980.25.1.0172 |
0.489 |
|
| 1980 |
Hollibaugh JT, Carruthers AB, Fuhrman JA, Azam F. Cycling of organic nitrogen in marine plankton communities studied in enclosed water columns Marine Biology. 59: 15-21. DOI: 10.1007/Bf00396978 |
0.556 |
|
| 1980 |
Fuhrman JA, Ammerman JW, Azam F. Bacterioplankton in the coastal euphotic zone: Distribution, activity and possible relationships with phytoplankton Marine Biology. 60: 201-207. DOI: 10.1007/Bf00389163 |
0.76 |
|
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