| Year |
Citation |
Score |
| 2022 |
Wicke K, Fischer M, Kubatko L. Effects of discordance between species and gene trees on phylogenetic diversity conservation. Journal of Mathematical Biology. 86: 13. PMID 36482146 DOI: 10.1007/s00285-022-01845-w |
0.466 |
|
| 2022 |
Wascher M, Kubatko LS. On the effects of selection and mutation on species tree inference. Molecular Phylogenetics and Evolution. 179: 107650. PMID 36441104 DOI: 10.1016/j.ympev.2022.107650 |
0.406 |
|
| 2022 |
Peng J, Swofford DL, Kubatko L. Estimation of Speciation Times Under the Multispecies Coalescent. Bioinformatics (Oxford, England). PMID 36227122 DOI: 10.1093/bioinformatics/btac679 |
0.425 |
|
| 2021 |
Richards A, Kubatko L. Bayesian-Weighted Triplet and Quartet Methods for Species Tree Inference. Bulletin of Mathematical Biology. 83: 93. PMID 34297209 DOI: 10.1007/s11538-021-00918-z |
0.435 |
|
| 2021 |
Peng J, Rajeevan H, Kubatko L, RoyChoudhury A. A Fast Likelihood Approach for Estimation of Large Phylogenies From Continuous Trait Data. Molecular Phylogenetics and Evolution. 107142. PMID 33713799 DOI: 10.1016/j.ympev.2021.107142 |
0.371 |
|
| 2021 |
Kong S, Kubatko LS. Comparative Performance of Popular Methods for Hybrid Detection using Genomic Data. Systematic Biology. PMID 33404632 DOI: 10.1093/sysbio/syaa092 |
0.312 |
|
| 2020 |
Wascher M, Kubatko L. Consistency of SVDQuartets and Maximum Likelihood for Coalescent-based Species Tree Estimation. Systematic Biology. PMID 32415974 DOI: 10.1093/Sysbio/Syaa039 |
0.516 |
|
| 2020 |
Sánchez-Pacheco SJ, Kong S, Pulido-Santacruz P, Murphy RW, Kubatko L. Median-joining network analysis of SARS-CoV-2 genomes is neither phylogenetic nor evolutionary. Proceedings of the National Academy of Sciences of the United States of America. PMID 32381733 DOI: 10.1073/Pnas.2007062117 |
0.303 |
|
| 2019 |
Kubatko LS, Chifman J. An invariants-based method for efficient identification of hybrid species from large-scale genomic data. Bmc Evolutionary Biology. 19: 112. PMID 31146685 DOI: 10.1186/S12862-019-1439-7 |
0.491 |
|
| 2019 |
Wainaina JM, Kubatko L, Harvey J, Ateka E, Makori T, Karanja D, Boykin LM, Kehoe MA. Evolutionary insights of and . Peerj. 7: e6297. PMID 30783563 DOI: 10.7717/Peerj.6297 |
0.375 |
|
| 2018 |
Long C, Kubatko L. Identifiability and Reconstructibility of Species Phylogenies Under a Modified Coalescent. Bulletin of Mathematical Biology. PMID 29926380 DOI: 10.1007/S11538-018-0456-9 |
0.495 |
|
| 2018 |
Gory JJ, Herbei R, Kubatko LS. Bayesian inference of selection in the Wright-Fisher diffusion model. Statistical Applications in Genetics and Molecular Biology. 17. PMID 29874197 DOI: 10.1515/Sagmb-2017-0046 |
0.399 |
|
| 2018 |
Long C, Kubatko L. The Effect of Gene Flow on Coalescent-based Species-tree Inference. Systematic Biology. PMID 29566212 DOI: 10.1093/Sysbio/Syy020 |
0.479 |
|
| 2018 |
Blischak PD, Chifman J, Wolfe AD, Kubatko LS. HyDe: a Python Package for Genome-Scale Hybridization Detection. Systematic Biology. PMID 29562307 DOI: 10.1093/Sysbio/Syy023 |
0.449 |
|
| 2018 |
BOYKIN LM, KINENE T, WAINAINA JM, SAVILL A, SEAL S, MUGERWA H, MACFADYEN S, TAY WT, DE BARRO P, KUBATKO L, ALICAI T, OMONGO CA, TAIRO F, NDUNGURU J, SSERUWAGI P. Review and guide to a future naming system of African Bemisia tabaci
species Systematic Entomology. 43: 427-433. DOI: 10.1111/Syen.12294 |
0.331 |
|
| 2017 |
Tian Y, Kubatko L. Rooting phylogenetic trees under the coalescent model using site pattern probabilities. Bmc Evolutionary Biology. 17: 263. PMID 29258427 DOI: 10.1186/S12862-017-1108-7 |
0.497 |
|
| 2017 |
Blischak PD, Kubatko LS, Wolfe AD. SNP genotyping and parameter estimation in polyploids using low-coverage sequencing data. Bioinformatics (Oxford, England). PMID 29028881 DOI: 10.1093/Bioinformatics/Btx587 |
0.397 |
|
| 2017 |
Wainaina JM, De Barro P, Kubatko L, Kehoe MA, Harvey J, Karanja D, Boykin LM. Global phylogenetic relationships, population structure and gene flow estimation of Trialeurodes vaporariorum (Greenhouse whitefly). Bulletin of Entomological Research. 1-9. PMID 28532532 DOI: 10.1017/S0007485317000360 |
0.436 |
|
| 2016 |
Allman ES, Kubatko LS, Rhodes JA. Split Scores: A Tool to Quantify Phylogenetic Signal in Genome-Scale Data. Systematic Biology. PMID 28123114 DOI: 10.1093/Sysbio/Syw103 |
0.41 |
|
| 2016 |
Thompson KL, Linnen CR, Kubatko L. Tree-based quantitative trait mapping in the presence of external covariates. Statistical Applications in Genetics and Molecular Biology. PMID 27875322 DOI: 10.1515/Sagmb-2015-0107 |
0.375 |
|
| 2016 |
Alicai T, Ndunguru J, Sseruwagi P, Tairo F, Okao-Okuja G, Nanvubya R, Kiiza L, Kubatko L, Kehoe MA, Boykin LM. Cassava brown streak virus has a rapidly evolving genome: implications for virus speciation, variability, diagnosis and host resistance. Scientific Reports. 6: 36164. PMID 27808114 DOI: 10.1038/Srep36164 |
0.376 |
|
| 2016 |
Tian Y, Kubatko LS. Expected pairwise congruence among gene trees under the coalescent model. Molecular Phylogenetics and Evolution. 106: 144-150. PMID 27693467 DOI: 10.1016/J.Ympev.2016.09.023 |
0.537 |
|
| 2016 |
Tian Y, Kubatko LS. Distribution of coalescent histories under the coalescent model with gene flow. Molecular Phylogenetics and Evolution. PMID 27614251 DOI: 10.1016/J.Ympev.2016.08.024 |
0.503 |
|
| 2016 |
Gaither J, Kubatko L. Hypothesis tests for phylogenetic quartets, with applications to coalescent-based species tree inference. Journal of Theoretical Biology. 408: 179-86. PMID 27521524 DOI: 10.1016/J.Jtbi.2016.08.013 |
0.509 |
|
| 2016 |
Wolfe AD, Necamp T, Fassnacht S, Blischak P, Kubatko L. Population genetics of Penstemon albomarginatus (Plantaginaceae), a rare Mojave Desert species of conservation concern Conservation Genetics. 17: 1245-1255. DOI: 10.1007/S10592-016-0857-Y |
0.346 |
|
| 2015 |
Blischak PD, Kubatko LS, Wolfe AD. Accounting for genotype uncertainty in the estimation of allele frequencies in autopolyploids. Molecular Ecology Resources. PMID 26607217 DOI: 10.1111/1755-0998.12493 |
0.41 |
|
| 2015 |
Kubatko L, Shah P, Herbei R, Gilchrist MA. A codon model of nucleotide substitution with selection on synonymous codon usage. Molecular Phylogenetics and Evolution. PMID 26358614 DOI: 10.1016/J.Ympev.2015.08.026 |
0.345 |
|
| 2015 |
Spade DA, Herbei R, Kubatko LS. Geometric ergodicity of a hybrid sampler for Bayesian inference of phylogenetic branch lengths. Mathematical Biosciences. 268: 9-21. PMID 26256054 DOI: 10.1016/J.Mbs.2015.07.002 |
0.458 |
|
| 2015 |
Chifman J, Kubatko L. Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sites. Journal of Theoretical Biology. 374: 35-47. PMID 25791286 DOI: 10.1016/J.Jtbi.2015.03.006 |
0.544 |
|
| 2014 |
Chifman J, Kubatko L. Quartet inference from SNP data under the coalescent model. Bioinformatics (Oxford, England). 30: 3317-24. PMID 25104814 DOI: 10.1093/Bioinformatics/Btu530 |
0.487 |
|
| 2014 |
Sovic MG, Kubatko LS, Fuerst PA. The effects of locus number, genetic divergence, and genotyping error on the utility of dominant markers for hybrid identification. Ecology and Evolution. 4: 462-73. PMID 24634730 DOI: 10.1002/Ece3.833 |
0.309 |
|
| 2014 |
Tian Y, Kubatko LS. Gene tree rooting methods give distributions that mimic the coalescent process. Molecular Phylogenetics and Evolution. 70: 63-9. PMID 24055603 DOI: 10.1016/J.Ympev.2013.09.004 |
0.54 |
|
| 2014 |
WOLFE AD, MCMULLEN-SIBUL A, TEPEDINO VJ, KUBATKO L, NECAMP T, FASSNACHT S. Conservation genetics and breeding system ofPenstemon debilis(Plantaginaceae), a rare beardtongue endemic to oil shale talus in western Colorado, USA Journal of Systematics and Evolution. 52: 598-611. DOI: 10.1111/Jse.12100 |
0.369 |
|
| 2014 |
Spade DA, Herbei R, Kubatko LS. A note on the relaxation time of two Markov chains on rooted phylogenetic tree spaces Statistics and Probability Letters. 84: 247-252. DOI: 10.1016/J.Spl.2013.09.017 |
0.387 |
|
| 2013 |
Thompson KL, Kubatko LS. Using ancestral information to detect and localize quantitative trait loci in genome-wide association studies. Bmc Bioinformatics. 14: 200. PMID 23786262 DOI: 10.1186/1471-2105-14-200 |
0.346 |
|
| 2013 |
Hovmöller R, Knowles LL, Kubatko LS. Effects of missing data on species tree estimation under the coalescent. Molecular Phylogenetics and Evolution. 69: 1057-62. PMID 23769751 DOI: 10.1016/J.Ympev.2013.06.004 |
0.542 |
|
| 2013 |
Herbei R, Kubatko L. Monte Carlo estimation of total variation distance of Markov chains on large spaces, with application to phylogenetics. Statistical Applications in Genetics and Molecular Biology. 12: 39-48. PMID 23459470 DOI: 10.1515/Sagmb-2012-0023 |
0.375 |
|
| 2013 |
Kubatko LS, Fan HH. Letter to the editor on the article entitled "Estimating species trees using Approximate Bayesian Computation" (Fan and Kubatko, Mol. Phylogenetics Evol. 59, 354-363). Molecular Phylogenetics and Evolution. 66: 438-9. PMID 23063884 DOI: 10.1016/J.Ympev.2012.10.003 |
0.457 |
|
| 2012 |
Boykin LM, Armstrong KF, Kubatko L, De Barro P. Species delimitation and global biosecurity. Evolutionary Bioinformatics Online. 8: 1-37. PMID 22267902 DOI: 10.4137/Ebo.S8532 |
0.468 |
|
| 2012 |
Boykin LM, Armstrong K, Kubatko L, De Barro P. DNA barcoding invasive insects: Database roadblocks Invertebrate Systematics. 26: 506-514. DOI: 10.1071/Is12025 |
0.412 |
|
| 2011 |
Gerard D, Gibbs HL, Kubatko L. Estimating hybridization in the presence of coalescence using phylogenetic intraspecific sampling. Bmc Evolutionary Biology. 11: 291. PMID 21978073 DOI: 10.1186/1471-2148-11-291 |
0.51 |
|
| 2011 |
Kubatko LS, Pearl DK. Evolution. Seeing the trees in your terrace. Science (New York, N.Y.). 333: 411-2. PMID 21778387 DOI: 10.1126/Science.1209690 |
0.479 |
|
| 2011 |
Roos C, Zinner D, Kubatko LS, Schwarz C, Yang M, Meyer D, Nash SD, Xing J, Batzer MA, Brameier M, Leendertz FH, Ziegler T, Perwitasari-Farajallah D, Nadler T, Walter L, et al. Nuclear versus mitochondrial DNA: evidence for hybridization in colobine monkeys. Bmc Evolutionary Biology. 11: 77. PMID 21435245 DOI: 10.1186/1471-2148-11-77 |
0.483 |
|
| 2011 |
Fan HH, Kubatko LS. Estimating species trees using approximate Bayesian computation. Molecular Phylogenetics and Evolution. 59: 354-63. PMID 21397706 DOI: 10.1016/J.Ympev.2011.02.019 |
0.563 |
|
| 2011 |
Kubatko LS, Gibbs HL, Bloomquist EW. Inferring species-level phylogenies and taxonomic distinctiveness using multilocus data in Sistrurus rattlesnakes. Systematic Biology. 60: 393-409. PMID 21389297 DOI: 10.1093/Sysbio/Syr011 |
0.479 |
|
| 2010 |
Stone AC, Battistuzzi FU, Kubatko LS, Perry GH, Trudeau E, Lin H, Kumar S. More reliable estimates of divergence times in Pan using complete mtDNA sequences and accounting for population structure. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 3277-88. PMID 20855302 DOI: 10.1098/Rstb.2010.0096 |
0.39 |
|
| 2010 |
Huang H, He Q, Kubatko LS, Knowles LL. Sources of error inherent in species-tree estimation: impact of mutational and coalescent effects on accuracy and implications for choosing among different methods. Systematic Biology. 59: 573-83. PMID 20833951 DOI: 10.1093/Sysbio/Syq047 |
0.504 |
|
| 2010 |
Hird S, Kubatko L, Carstens B. Rapid and accurate species tree estimation for phylogeographic investigations using replicated subsampling. Molecular Phylogenetics and Evolution. 57: 888-98. PMID 20727977 DOI: 10.1016/J.Ympev.2010.08.006 |
0.531 |
|
| 2010 |
Boykin LM, Kubatko LS, Lowrey TK. Comparison of methods for rooting phylogenetic trees: a case study using Orcuttieae (Poaceae: Chloridoideae). Molecular Phylogenetics and Evolution. 54: 687-700. PMID 19931622 DOI: 10.1016/J.Ympev.2009.11.016 |
0.443 |
|
| 2009 |
Kubatko LS. Identifying hybridization events in the presence of coalescence via model selection Systematic Biology. 58: 478-488. PMID 20525602 DOI: 10.1093/Sysbio/Syp055 |
0.522 |
|
| 2009 |
Liu L, Yu L, Kubatko L, Pearl DK, Edwards SV. Coalescent methods for estimating phylogenetic trees Molecular Phylogenetics and Evolution. 53: 320-328. PMID 19501178 DOI: 10.1016/J.Ympev.2009.05.033 |
0.565 |
|
| 2009 |
Kubatko LS, Carstens BC, Knowles LL. STEM: species tree estimation using maximum likelihood for gene trees under coalescence. Bioinformatics (Oxford, England). 25: 971-3. PMID 19211573 DOI: 10.1093/Bioinformatics/Btp079 |
0.495 |
|
| 2009 |
Meng C, Kubatko LS. Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model Theoretical Population Biology. 75: 35-45. PMID 19038278 DOI: 10.1016/J.Tpb.2008.10.004 |
0.53 |
|
| 2009 |
Kubatko LS. Modeling the past: a resource for the future Trends in Ecology & Evolution. 24: 125-126. DOI: 10.1016/J.Tree.2008.10.005 |
0.318 |
|
| 2009 |
Brock GN, Beavis WD, Kubatko LS. Fuzzy logic and related methods as a screening tool for detecting gene regulatory networks Information Fusion. 10: 250-259. DOI: 10.1016/J.Inffus.2008.11.008 |
0.344 |
|
| 2008 |
Efromovich S, Kubatko LS. Coalescent time distributions in trees of arbitrary size. Statistical Applications in Genetics and Molecular Biology. 7: Article2. PMID 18241192 DOI: 10.2202/1544-6115.1319 |
0.495 |
|
| 2008 |
Kubatko LS. Inference of phylogenetic trees Lecture Notes in Mathematics. 1922: 1-38. DOI: 10.1007/978-3-540-74331-6_1 |
0.371 |
|
| 2007 |
Kubatko LS, Degnan JH. Inconsistency of phylogenetic estimates from concatenated data under coalescence. Systematic Biology. 56: 17-24. PMID 17366134 DOI: 10.1080/10635150601146041 |
0.629 |
|
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