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Tomas Gedeon - Publications

Affiliations: 
Montana State University, Bozeman, MT 
Area:
Mathematics
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52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Andreas E, Cummins B, Gedeon T. Quantifying robustness of the gap gene network. Journal of Theoretical Biology. 111720. PMID 38211890 DOI: 10.1016/j.jtbi.2024.111720  0.643
2023 Hari K, Duncan W, Ibrahim MA, Jolly MK, Cummins B, Gedeon T. Assessing biological network dynamics: comparing numerical simulations with analytical decomposition of parameter space. Npj Systems Biology and Applications. 9: 29. PMID 37400474 DOI: 10.1038/s41540-023-00289-2  0.65
2023 Cummins B, Vrana J, Moseley RC, Eramian H, Deckard A, Fontanarrosa P, Bryce D, Weston M, Zheng G, Nowak J, Motta FC, Eslami M, Johnson KL, Goldman RP, Myers CJ, ... ... Gedeon T, et al. Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop. Synthetic Biology (Oxford, England). 8: ysad005. PMID 37073283 DOI: 10.1093/synbio/ysad005  0.56
2022 Cummins B, Motta FC, Moseley RC, Deckard A, Campione S, Gameiro M, Gedeon T, Mischaikow K, Haase SB. Experimental guidance for discovering genetic networks through hypothesis reduction on time series. Plos Computational Biology. 18: e1010145. PMID 36215333 DOI: 10.1371/journal.pcbi.1010145  0.627
2022 Crawford-Kahrl P, Nerem RR, Cummins B, Gedeon T. Genetic networks encode secrets of their past. Journal of Theoretical Biology. 541: 111092. PMID 35307408 DOI: 10.1016/j.jtbi.2022.111092  0.315
2021 Gameiro M, Gedeon T, Kepley S, Mischaikow K. Rational design of complex phenotype via network models. Plos Computational Biology. 17: e1009189. PMID 34324484 DOI: 10.1371/journal.pcbi.1009189  0.368
2020 Smith LM, Motta FC, Chopra G, Moch JK, Nerem RR, Cummins B, Roche KE, Kelliher CM, Leman AR, Harer J, Gedeon T, Waters NC, Haase SB. An intrinsic oscillator drives the blood stage cycle of the malaria parasite . Science (New York, N.Y.). 368: 754-759. PMID 32409472 DOI: 10.1126/Science.Aba4357  0.534
2020 Xin Y, Cummins B, Gedeon T. Multistability in the epithelial-mesenchymal transition network. Bmc Bioinformatics. 21: 71. PMID 32093616 DOI: 10.1186/S12859-020-3413-1  0.579
2020 Gedeon T. Multi-parameter exploration of dynamics of regulatory networks. Bio Systems. 104113. PMID 32057819 DOI: 10.1016/J.Biosystems.2020.104113  0.482
2020 Berry E, Cummins B, Nerem RR, Smith LM, Haase SB, Gedeon T. Using extremal events to characterize noisy time series. Journal of Mathematical Biology. PMID 32008103 DOI: 10.1007/S00285-020-01471-4  0.602
2019 Crawford-Kahrl P, Cummins B, Gedeon T. Comparison of Combinatorial Signatures of Global Network Dynamics Generated by Two Classes of ODE Models. Siam Journal On Applied Dynamical Systems. 18: 418-457. PMID 33679257 DOI: 10.1137/18m1163610  0.432
2019 Crawford-Kahrl P, Cummins B, Gedeon T. Comparison of Combinatorial Signatures of Global Network Dynamics Generated by Two Classes of ODE Models Siam Journal On Applied Dynamical Systems. 18: 418-457. DOI: 10.1137/18M1163610  0.673
2018 Cummins B, Gedeon T, Harker S, Mischaikow K. Model Rejection and Parameter Reduction via Time Series. Siam Journal On Applied Dynamical Systems. 17: 1589-1616. PMID 31762711 DOI: 10.1137/17M1134548  0.764
2018 Cummins B, Gedeon T, Harker S, Mischaikow K. DSGRN: Examining the Dynamics of Families of Logical Models. Frontiers in Physiology. 9: 549. PMID 29875674 DOI: 10.3389/Fphys.2018.00549  0.787
2018 Huttinga Z, Cummins B, Gedeon T, Mischaikow K. Global dynamics for switching systems and their extensions by linear differential equations. Physica D. Nonlinear Phenomena. 367: 19-37. PMID 29867284 DOI: 10.1016/J.Physd.2017.11.003  0.64
2018 Gedeon T, Cummins B, Harker S, Mischaikow K. Identifying robust hysteresis in networks. Plos Computational Biology. 14: e1006121. PMID 29684007 DOI: 10.1371/Journal.Pcbi.1006121  0.774
2017 Gedeon T, Harker S, Kokubu H, Mischaikow K, Oka H. Global Dynamics for Steep Nonlinearities in Two Dimensions. Physica D. Nonlinear Phenomena. 339: 18-38. PMID 28392611 DOI: 10.1016/J.Physd.2016.08.006  0.788
2016 Cummins B, Gedeon T, Harker S, Mischaikow K, Mok K. Combinatorial representation of parameter space for switching networks. Siam Journal On Applied Dynamical Systems. 15: 2176-2212. PMID 30774565 DOI: 10.1137/15M1052743  0.788
2016 Gedeon T, Pernarowski M, Wilander A. Cyclic Feedback Systems with Quorum Sensing Coupling. Bulletin of Mathematical Biology. PMID 27328980 DOI: 10.1007/S11538-016-0187-8  0.373
2016 Fan G, Cummins B, Gedeon T. Convergence Properties of Posttranslationally Modified Protein-Protein Switching Networks with Fast Decay Rates. Bulletin of Mathematical Biology. PMID 27271120 DOI: 10.1007/S11538-016-0175-Z  0.627
2015 Cummins B, Gedeon T, Spendlove K. On the efficacy of state space reconstruction methods in determining causality Siam Journal On Applied Dynamical Systems. 14: 335-381. DOI: 10.1137/130946344  0.628
2013 Spendlove K, Berwald J, Gedeon T. Predicting high-codimension critical transitions in dynamical systems using active learning Mathematical and Computer Modelling of Dynamical Systems. 19: 557-574. DOI: 10.1080/13873954.2013.801866  0.77
2012 Heys JJ, Rajaraman PK, Gedeon T, Miller JP. A model of filiform hair distribution on the cricket cercus. Plos One. 7: e46588. PMID 23056357 DOI: 10.1371/Journal.Pone.0046588  0.303
2012 Gedeon T, Cummins G, Heys JJ. Effect of model selection on prediction of periodic behavior in gene regulatory networks. Bulletin of Mathematical Biology. 74: 1706-26. PMID 22610797 DOI: 10.1007/S11538-012-9732-2  0.438
2012 Gedeon T, Parker AE, Dimitrov AG. The mathematical structure of information bottleneck methods Entropy. 14: 456-479. DOI: 10.3390/E14030456  0.556
2012 Berwald J, Gedeon T, Sheppard J. Using machine learning to predict catastrophes in dynamical systems Journal of Computational and Applied Mathematics. 236: 2235-2245. DOI: 10.1016/J.Cam.2011.11.006  0.768
2012 Cummins B, Gedeon T. Assessing the mechanical response of groups of arthropod filiform flow sensors Frontiers in Sensing: From Biology to Engineering. 2147483647: 239-250. DOI: 10.1007/978-3-211-99749-9_16  0.517
2010 Gedeon T. Oscillations in Monotone Systems with a Negative Feedback Siam Journal On Applied Dynamical Systems. 9: 84-112. DOI: 10.1137/090746653  0.308
2010 Parker AE, Dimitrov AG, Gedeon T. Symmetry breaking in soft clustering decoding of neural codes Ieee Transactions On Information Theory. 56: 901-927. DOI: 10.1109/Tit.2009.2037045  0.546
2009 Gedeon T, Hines G. Multi-valued characteristics and Morse decompositions Journal of Differential Equations. 247: 1013-1042. DOI: 10.1016/J.Jde.2009.04.019  0.361
2008 Gedeon T, Parker AE, Campion C, Aldworth Z. Annealing and the Normalized N-Cut. Pattern Recognition. 41: 592-606. PMID 19190710 DOI: 10.1016/J.Patcog.2007.06.014  0.516
2008 Gedeon T, Mischaikow K, Patterson K, Traldi E. Binding cooperativity in phage lambda is not sufficient to produce an effective switch. Biophysical Journal. 94: 3384-92. PMID 18400951 DOI: 10.1529/Biophysj.107.121756  0.644
2008 Heys JJ, Gedeon T, Knott BC, Kim Y. Modeling arthropod filiform hair motion using the penalty immersed boundary method. Journal of Biomechanics. 41: 977-84. PMID 18255073 DOI: 10.1016/J.Jbiomech.2007.12.015  0.326
2008 Cummins B, Gedeon T. A refined model of viscous coupling between filiform hairs in the cricket cercal system Asme International Mechanical Engineering Congress and Exposition, Proceedings. 8: 1301-1309. DOI: 10.1115/IMECE2007-41075  0.535
2007 Gedeon T, Sontag ED. Oscillations in multi-stable monotone systems with slowly varying feedback. Journal of Differential Equations. 239: 273-295. PMID 18704155 DOI: 10.1016/J.Jde.2007.05.029  0.386
2007 Boczko E, Gedeon T, Mischaikow K. Dynamics of a simple regulatory switch. Journal of Mathematical Biology. 55: 679-719. PMID 17622532 DOI: 10.1007/S00285-007-0102-X  0.364
2007 Cummins B, Gedeon T, Klapper I, Cortez R. Interaction between arthropod filiform hairs in a fluid environment. Journal of Theoretical Biology. 247: 266-80. PMID 17434184 DOI: 10.1016/J.Jtbi.2007.02.003  0.563
2007 Gedeon T, Arathorn D. Convergence of map seeking circuits Journal of Mathematical Imaging and Vision. 29: 235-248. DOI: 10.1007/S10851-007-0028-3  0.349
2007 Harker SR, Vogel CR, Gedeon T. Analysis of constrained optimization variants of the map-seeking circuit algorithm Journal of Mathematical Imaging and Vision. 29: 49-62. DOI: 10.1007/S10851-007-0024-7  0.743
2006 Gedeon T, Kokubu H, Mischaikow K, Oka H. The Conley index for fast-slow systems II: Multidimensional slow variable Journal of Differential Equations. 225: 242-307. DOI: 10.1016/J.Jde.2005.11.006  0.3
2005 Boczko EM, Cooper TG, Gedeon T, Mischaikow K, Murdock DG, Pratap S, Wells KS. Structure theorems and the dynamics of nitrogen catabolite repression in yeast. Proceedings of the National Academy of Sciences of the United States of America. 102: 5647-52. PMID 15814615 DOI: 10.1073/Pnas.0501339102  0.377
2004 Gedeon T, Holzer M. Phase locking in integrate-and-fire models with refractory periods and modulation. Journal of Mathematical Biology. 49: 577-603. PMID 15565447 DOI: 10.1007/S00285-004-0268-4  0.305
2004 Parker AE, Gedeon T. Bifurcation Structure of a Class of SN-invariant Constrained Optimization Problems Journal of Dynamics and Differential Equations. 16: 629-678. DOI: 10.1007/S10884-004-6112-0  0.524
2003 Dimitrov AG, Miller JP, Gedeon T, Aldworth Z, Parker AE. Analysis of neural coding through quantization with an information-based distortion measure. Network (Bristol, England). 14: 151-76. PMID 12613556 DOI: 10.1080/Net.14.1.151.176  0.516
2003 Gedeon T. Attractors in continuous –time switching networks Communications On Pure and Applied Analysis. 2: 187-209. DOI: 10.3934/Cpaa.2003.2.187  0.378
2003 Gedeon T, Holzer M, Pernarowski M. Attractor reconstruction from interspike intervals is incomplete Physica D: Nonlinear Phenomena. 178: 149-172. DOI: 10.1016/S0167-2789(03)00003-4  0.309
2003 Parker AE, Gedeon T, Dimitrov AG. Annealing and the rate distortion problem Advances in Neural Information Processing Systems.  0.47
2002 Gedeon T, Kokubu H, Mischaikow K, Oka H. Chaotic Solutions in Slowly Varying Perturbations of Hamiltonian Systems with Applications to Shallow Water Sloshing Journal of Dynamics and Differential Equations. 14: 63-84. DOI: 10.1023/A:1012967211737  0.319
2000 Gedeon T. Global dynamics of neural nets with infinite gain Physica D: Nonlinear Phenomena. 146: 200-212. DOI: 10.1016/S0167-2789(00)00129-9  0.419
1999 Gedeon T. Additive neural networks and periodic patterns. Neural Networks : the Official Journal of the International Neural Network Society. 12: 617-626. PMID 12662673 DOI: 10.1016/S0893-6080(99)00023-4  0.305
1998 Fiedler B, Gedeon T. A class of convergent neural network dynamics Physica D: Nonlinear Phenomena. 111: 288-294.  0.309
1995 Gedeon T, Mischaikow K. Structure of the global attractor of cyclic feedback systems Journal of Dynamics and Differential Equations. 7: 141-190. DOI: 10.1007/Bf02218817  0.413
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