Ariel Rokem, Ph.D. - Publications

Affiliations: 
2015- eScience University of Washington, Seattle, Seattle, WA 
Area:
MRI, Vision, Data Science
Website:
http://arokem.org

69 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Takemura H, Kruper JA, Miyata T, Rokem A. Tractometry of Human Visual White Matter Pathways in Health and Disease. Magnetic Resonance in Medical Sciences : Mrms : An Official Journal of Japan Society of Magnetic Resonance in Medicine. 23: 316-340. PMID 38866532 DOI: 10.2463/mrms.rev.2024-0007  0.557
2024 Roy E, Van Rinsveld A, Nedelec P, Richie-Halford A, Rauschecker AM, Sugrue LP, Rokem A, McCandliss BD, Yeatman JD. Differences in educational opportunity predict white matter development. Developmental Cognitive Neuroscience. 67: 101386. PMID 38676989 DOI: 10.1016/j.dcn.2024.101386  0.608
2024 Pogoncheff G, Hu Z, Rokem A, Beyeler M. Explainable machine learning predictions of perceptual sensitivity for retinal prostheses. Journal of Neural Engineering. 21. PMID 38452381 DOI: 10.1088/1741-2552/ad310f  0.676
2024 Roy E, Richie-Halford A, Kruper J, Narayan M, Bloom D, Nedelec P, Rauschecker AM, Sugrue LP, Brown TT, Jernigan TL, McCandliss BD, Rokem A, Yeatman JD. White matter and literacy: A dynamic system in flux. Developmental Cognitive Neuroscience. 65: 101341. PMID 38219709 DOI: 10.1016/j.dcn.2024.101341  0.631
2023 Yücel EI, Mohan V, Boynton GM, Rokem A, Fine I. Contributed Session I: The perceptual experience of optogenetic vision. Journal of Vision. 23: 71. PMID 38109577 DOI: 10.1167/jov.23.15.71  0.641
2023 Poldrack RA, Markiewicz CJ, Appelhoff S, Ashar YK, Auer T, Baillet S, Bansal S, Beltrachini L, Benar CG, Bertazzoli G, Bhogawar S, Blair RW, Bortoletto M, Boudreau M, Brooks TL, ... ... Rokem A, et al. The Past, Present, and Future of the Brain Imaging Data Structure (BIDS). Arxiv. PMID 37744469  0.749
2023 Pogoncheff G, Hu Z, Rokem A, Beyeler M. Explainable Machine Learning Predictions of Perceptual Sensitivity for Retinal Prostheses. Medrxiv : the Preprint Server For Health Sciences. PMID 36798201 DOI: 10.1101/2023.02.09.23285633  0.666
2022 Yücel EI, Sadeghi R, Kartha A, Montezuma SR, Dagnelie G, Rokem A, Boynton GM, Fine I, Beyeler M. Factors affecting two-point discrimination in Argus II patients. Frontiers in Neuroscience. 16: 901337. PMID 36090266 DOI: 10.3389/fnins.2022.901337  0.751
2022 Yucel EI, Beyeler M, Sadeghi R, Rokem A, Fine I, Kartha A, Dagnelie G. What limits the spatial resolution of artificial vision in epiretinal implant patients? Journal of Vision. 22: 12. PMID 35120248 DOI: 10.1167/jov.22.3.12  0.448
2020 Rokem A, Kay K. Fractional ridge regression: a fast, interpretable reparameterization of ridge regression. Gigascience. 9. PMID 33252656 DOI: 10.1093/gigascience/giaa133  0.523
2020 Chandio BQ, Risacher SL, Pestilli F, Bullock D, Yeh FC, Koudoro S, Rokem A, Harezlak J, Garyfallidis E. Bundle analytics, a computational framework for investigating the shapes and profiles of brain pathways across populations. Scientific Reports. 10: 17149. PMID 33051471 DOI: 10.1038/s41598-020-74054-4  0.71
2020 Chandio BQ, Risacher SL, Pestilli F, Bullock D, Yeh F, Koudoro S, Rokem A, Harezlak J, Garyfallidis E. Bundle analytics, a computational framework for investigating the shapes and profiles of brain pathways across populations Scientific Reports. 10. DOI: 10.1038/s41598-020-74054-4  0.71
2019 Beyeler M, Boynton GM, Fine I, Rokem A. Model-Based Recommendations for Optimal Surgical Placement of Epiretinal Implants. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 11768: 394-402. PMID 35373219 DOI: 10.1007/978-3-030-32254-0_44  0.761
2019 Bressler DW, Rokem A, Silver MA. Slow Endogenous Fluctuations in Cortical Functional Magnetic Resonance Imaging Signals Correlate with Reduced Performance in a Visual Detection Task and Are Suppressed by Spatial Attention. Journal of Cognitive Neuroscience. 1-15. PMID 31560268 DOI: 10.1162/Jocn_A_01470  0.775
2019 Beyeler M, Nanduri D, Weiland JD, Rokem A, Boynton GM, Fine I. A model of ganglion axon pathways accounts for percepts elicited by retinal implants. Scientific Reports. 9: 9199. PMID 31235711 DOI: 10.1038/S41598-019-45416-4  0.789
2019 Bain JS, Yeatman JD, Schurr R, Rokem A, Mezer AA. Evaluating arcuate fasciculus laterality measurements across dataset and tractography pipelines. Human Brain Mapping. PMID 31106944 DOI: 10.1002/Hbm.24626  0.664
2019 Huber E, Henriques RN, Owen JP, Rokem A, Yeatman JD. Applying microstructural models to understand the role of white matter in cognitive development. Developmental Cognitive Neuroscience. 36: 100624. PMID 30927705 DOI: 10.1016/j.dcn.2019.100624  0.326
2019 Tian Q, Yang G, Leuze CWU, Rokem A, Edlow BL, McNab JA. Generalized diffusion spectrum magnetic resonance imaging (GDSI) for model-free reconstruction of the ensemble average propagator. Neuroimage. PMID 30684636 DOI: 10.1016/j.neuroimage.2019.01.038  0.333
2019 Yucel EI, Benson NC, Tong Y, Frederick B, Fine I, Rokem A. The Alignment of Systemic Low Frequency Oscillations with V1 Retinotopic Organization Journal of Vision. 19: 79. DOI: 10.1167/19.10.79  0.444
2018 Huber E, Donnelly PM, Rokem A, Yeatman JD. Rapid and widespread white matter plasticity during an intensive reading intervention. Nature Communications. 9: 2260. PMID 29884784 DOI: 10.1038/s41467-018-04627-5  0.3
2018 Yeatman JD, Richie-Halford A, Smith JK, Keshavan A, Rokem A. A browser-based tool for visualization and analysis of diffusion MRI data. Nature Communications. 9: 940. PMID 29507333 DOI: 10.1038/s41467-018-03297-7  0.343
2018 Beyeler M, Nanduri D, Weiland J, Rokem A, Boynton G, Fine I. Optimizing stimulation protocols for prosthetic vision based on retinal anatomy Journal of Vision. 18: 205. DOI: 10.1167/18.10.205  0.754
2017 Xiao S, Bucher F, Wu Y, Rokem A, Lee CS, Marra KV, Fallon R, Diaz-Aguilar S, Aguilar E, Friedlander M, Lee AY. Fully automated, deep learning segmentation of oxygen-induced retinopathy images. Jci Insight. 2. PMID 29263301 DOI: 10.1172/Jci.Insight.97585  0.306
2017 Ferizi U, Scherrer B, Schneider T, Alipoor M, Eufracio O, Fick RHJ, Deriche R, Nilsson M, Loya-Olivas AK, Rivera M, Poot DHJ, Ramirez-Manzanares A, Marroquin JL, Rokem A, Pötter C, et al. Diffusion MRI microstructure models with in vivo human brain Connectome data: results from a multi-group comparison. Nmr in Biomedicine. PMID 28643354 DOI: 10.1002/Nbm.3734  0.35
2017 Beyeler M, Rokem A, Boynton G, Fine I. Learning to see again: biological constraints on cortical plasticity and the implications for sight restoration technologies. Journal of Neural Engineering. PMID 28612755 DOI: 10.1088/1741-2552/Aa795E  0.79
2017 Rokem A, Takemura H, Bock AS, Scherf KS, Behrmann M, Wandell BA, Fine I, Bridge H, Pestilli F. The visual white matter: The application of diffusion MRI and fiber tractography to vision science. Journal of Vision. 17: 4. PMID 28196374 DOI: 10.1167/17.2.4  0.797
2017 Beyeler M, Rokem A, Boynton GM, Fine I. Improving retinal prostheses using the “virtual patient” Journal of Vision. 17: 11. DOI: 10.1167/17.15.11  0.753
2017 Beyeler M, Rokem A, Boynton G, Fine I. Modeling the perceptual experience of retinal prosthesis patients Journal of Vision. 17: 573. DOI: 10.1167/17.10.573  0.764
2016 Mezer A, Rokem A, Berman S, Hastie T, Wandell BA. Evaluating quantitative proton-density-mapping methods. Human Brain Mapping. PMID 27273015 DOI: 10.1002/Hbm.23264  0.7
2015 Ajina S, Pestilli F, Rokem A, Kennard C, Bridge H. Human blindsight is mediated by an intact geniculo-extrastriate pathway. Elife. 4. PMID 26485034 DOI: 10.7554/Elife.08935  0.705
2015 Rokem A, Yeatman JD, Pestilli F, Kay KN, Mezer A, van der Walt S, Wandell BA. Correction: Evaluating the Accuracy of Diffusion MRI Models in White Matter. Plos One. 10: e0139150. PMID 26394229 DOI: 10.1371/Journal.Pone.0139150  0.744
2015 Rokem A, Yeatman JD, Pestilli F, Kay KN, Mezer A, van der Walt S, Wandell BA. Evaluating the accuracy of diffusion MRI models in white matter. Plos One. 10: e0123272. PMID 25879933 DOI: 10.1371/Journal.Pone.0123272  0.762
2015 Takemura H, Rokem A, Winawer J, Yeatman JD, Wandell BA, Pestilli F. A Major Human White Matter Pathway Between Dorsal and Ventral Visual Cortex. Cerebral Cortex (New York, N.Y. : 1991). PMID 25828567 DOI: 10.1093/Cercor/Bhv064  0.784
2015 Ajina S, Pestilli F, Rokem A, Kennard C, Bridge H. Author response: Human blindsight is mediated by an intact geniculo-extrastriate pathway Elife. DOI: 10.7554/Elife.08935.016  0.705
2014 Zheng CY, Pestilli F, Rokem A. Deconvolution of High Dimensional Mixtures via Boosting, with Application to Diffusion-Weighted MRI of Human Brain. Advances in Neural Information Processing Systems. 27: 2699-2707. PMID 25684972  0.722
2014 Yeatman JD, Weiner KS, Pestilli F, Rokem A, Mezer A, Wandell BA. The vertical occipital fasciculus: a century of controversy resolved by in vivo measurements. Proceedings of the National Academy of Sciences of the United States of America. 111: E5214-23. PMID 25404310 DOI: 10.1073/Pnas.1418503111  0.791
2014 Pestilli F, Yeatman JD, Rokem A, Kay KN, Wandell BA. Evaluation and statistical inference for human connectomes. Nature Methods. 11: 1058-63. PMID 25194848 DOI: 10.1038/nmeth.3098  0.772
2014 Garyfallidis E, Brett M, Amirbekian B, Rokem A, van der Walt S, Descoteaux M, Nimmo-Smith I. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics. 8: 8. PMID 24600385 DOI: 10.3389/fninf.2014.00008  0.359
2014 McDevitt EA, Rokem A, Silver MA, Mednick SC. Sex differences in sleep-dependent perceptual learning. Vision Research. 99: 172-9. PMID 24141074 DOI: 10.1016/j.visres.2013.10.009  0.464
2014 Rokem A, Pestilli F. Measuring and modelling of diffusion and white-matter tracts Journal of Vision. 14: 1461-1461. DOI: 10.1167/14.10.1461  0.726
2014 Rokem A, Silver M. Cholinergic enhancement increases information content of stimulus representations in human visual cortex Journal of Vision. 14: 1413-1413. DOI: 10.1167/14.10.1413  0.548
2014 Pestilli F, Yeatman J, Rokem A, Kay K, Takemura H, Wandell B. LiFE: Linear Fascicle Evaluation a new technology to study visual connectomes Journal of Vision. 14: 1122-1122. DOI: 10.1167/14.10.1122  0.76
2013 Kay KN, Rokem A, Winawer J, Dougherty RF, Wandell BA. GLMdenoise: a fast, automated technique for denoising task-based fMRI data. Frontiers in Neuroscience. 7: 247. PMID 24381539 DOI: 10.3389/Fnins.2013.00247  0.74
2013 Yoon JH, Sheremata SL, Rokem A, Silver MA. Windows to the soul: vision science as a tool for studying biological mechanisms of information processing deficits in schizophrenia. Frontiers in Psychology. 4: 681. PMID 24198792 DOI: 10.3389/fpsyg.2013.00681  0.74
2013 Rokem A, Silver MA. The benefits of cholinergic enhancement during perceptual learning are long-lasting. Frontiers in Computational Neuroscience. 7: 66. PMID 23755006 DOI: 10.3389/fncom.2013.00066  0.494
2013 Kay KN, Winawer J, Rokem A, Mezer A, Wandell BA. A two-stage cascade model of BOLD responses in human visual cortex. Plos Computational Biology. 9: e1003079. PMID 23737741 DOI: 10.1371/Journal.Pcbi.1003079  0.787
2012 Kosovicheva AA, Sheremata SL, Rokem A, Landau AN, Silver MA. Cholinergic enhancement reduces orientation-specific surround suppression but not visual crowding. Frontiers in Behavioral Neuroscience. 6: 61. PMID 23049505 DOI: 10.3389/fnbeh.2012.00061  0.76
2012 Rokem A, Landau AN, Prinzmetal W, Wallace DL, Silver MA, D'Esposito M. Modulation of inhibition of return by the dopamine D2 receptor agonist bromocriptine depends on individual DAT1 genotype. Cerebral Cortex (New York, N.Y. : 1991). 22: 1133-8. PMID 21799208 DOI: 10.1093/cercor/bhr185  0.586
2012 Rokem A, Silver MA. Cholinergic enhancement of perceptual learning in the human visual system Journal of Vision. 12: 1402-1402. DOI: 10.1167/12.9.1402  0.546
2012 McDevitt E, Bays B, Rokem A, Silver M, Mednick S. Men need a nap to show perceptual learning of motion direction discrimination, but women do not. Journal of Vision. 12: 1132-1132. DOI: 10.1167/12.9.1132  0.465
2012 Kosovicheva AA, Sheremata SL, Rokem A, Landau AN, Silver MA. Cholinergic enhancement reduces 1 orientation-specific surround suppression but not visual crowding Frontiers in Behavioral Neuroscience 0.737
2011 Rokem A, Yoon JH, Ooms RE, Maddock RJ, Minzenberg MJ, Silver MA. Broader visual orientation tuning in patients with schizophrenia. Frontiers in Human Neuroscience. 5: 127. PMID 22069385 DOI: 10.3389/Fnhum.2011.00127  0.558
2011 Prinzmetal W, Rokem A, Silver M. What Stimulus Attributes are Enhanced by Attention? Journal of Vision. 11: 122-122. DOI: 10.1167/11.11.122  0.479
2011 Rokem A, Silver M, McDevitt E, Mednick S. The effects of naps on the magnitude and specificity of perceptual learning of motion direction discrimination Journal of Vision. 11: 1000-1000. DOI: 10.1167/11.11.1000  0.479
2010 Rokem A, Silver MA. Cholinergic enhancement augments magnitude and specificity of visual perceptual learning in healthy humans. Current Biology : Cb. 20: 1723-8. PMID 20850321 DOI: 10.1016/j.cub.2010.08.027  0.54
2010 Rokem A, Landau AN, Garg D, Prinzmetal W, Silver MA. Cholinergic enhancement increases the effects of voluntary attention but does not affect involuntary attention. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. 35: 2538-44. PMID 20811340 DOI: 10.1038/npp.2010.118  0.495
2010 Yoon JH, Maddock RJ, Rokem A, Silver MA, Minzenberg MJ, Ragland JD, Carter CS. GABA concentration is reduced in visual cortex in schizophrenia and correlates with orientation-specific surround suppression. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 3777-81. PMID 20220012 DOI: 10.1523/Jneurosci.6158-09.2010  0.505
2010 Rokem A, Garg D, Landau A, Prinzmetal W, Silver M. Effects of cholinergic enhancement on voluntary and involuntary visuospatial attention in humans Journal of Vision. 9: 132-132. DOI: 10.1167/9.8.132  0.482
2010 Rokem A, Sanghvi S, Silver M. A model of V1-to-MT connectivity accounts for motion perception anisotropies in the human visual system Journal of Vision. 8: 1030-1030. DOI: 10.1167/8.6.1030  0.545
2010 Rokem A, Sanghvi S, Silver M. Motion adaptation bandwidth anisotropies in the human visual system Journal of Vision. 7: 101-101. DOI: 10.1167/7.15.101  0.532
2010 Silver M, Maddock R, Rokem A, Yoon J. Gamma-aminobutyric acid concentration is reduced in visual cortex in schizophrenia and correlates with orientation-specific surround suppression Journal of Vision. 10: 908-908. DOI: 10.1167/10.7.908  0.514
2010 Prinzmetal W, Rokem A, Landau A, Wallace D, Silver M, D'Esposito M. The D2 dopamine receptor agonist bromocriptine enhances voluntary but not involuntary spatial attention in humans Journal of Vision. 10: 155-155. DOI: 10.1167/10.7.155  0.56
2010 Rokem A, Silver M. Cholinergic enhancement augments the magnitude and specificity of perceptual learning in the human visual system: a pharmacological fMRI study Journal of Vision. 10: 1101-1101. DOI: 10.1167/10.7.1101  0.555
2009 Eyherabide HG, Rokem A, Herz AV, Samengo I. Bursts generate a non-reducible spike-pattern code. Frontiers in Neuroscience. 3: 8-14. PMID 19753092 DOI: 10.3389/neuro.01.002.2009  0.619
2009 Yoon JH, Rokem AS, Silver MA, Minzenberg MJ, Ursu S, Ragland JD, Carter CS. Diminished orientation-specific surround suppression of visual processing in schizophrenia. Schizophrenia Bulletin. 35: 1078-84. PMID 19620601 DOI: 10.1093/Schbul/Sbp064  0.485
2009 Rokem A, Silver MA. A model of encoding and decoding in V1 and MT accounts for motion perception anisotropies in the human visual system. Brain Research. 1299: 3-16. PMID 19595992 DOI: 10.1016/j.brainres.2009.07.005  0.525
2009 Rokem A, Ahissar M. Interactions of cognitive and auditory abilities in congenitally blind individuals. Neuropsychologia. 47: 843-8. PMID 19138693 DOI: 10.1016/j.neuropsychologia.2008.12.017  0.593
2008 Eyherabide HG, Rokem A, Herz AV, Samengo I. Burst firing is a neural code in an insect auditory system. Frontiers in Computational Neuroscience. 2: 3. PMID 18946533 DOI: 10.3389/neuro.10.003.2008  0.62
2006 Rokem A, Watzl S, Gollisch T, Stemmler M, Herz AV, Samengo I. Spike-timing precision underlies the coding efficiency of auditory receptor neurons. Journal of Neurophysiology. 95: 2541-52. PMID 16354733 DOI: 10.1152/jn.00891.2005  0.635
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