Gary Ruvkun - Related publications

Genetics Massachusetts General Hospital, Boston, MA 
miRNA, C. elegans development and lifespan
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
48 most relevant papers in past 60 days:
Year Citation  Score
2021 Orsi RH, Chaturongakul S, Oliver HF, Ponnala L, Gaballa A, Wiedmann M. Alternative σ Factors Regulate Overlapping as Well as Distinct Stress Response and Metabolic Functions in under Stationary Phase Stress Condition. Pathogens (Basel, Switzerland). 10. PMID 33915780 DOI: 10.3390/pathogens10040411   
2021 Cheng F, De Luca A, Hogan AL, Rayner SL, Davidson JM, Watchon M, Stevens CH, Muñoz SS, Ooi L, Yerbury JJ, Don EK, Fifita JA, Villalva MD, Suddull H, Chapman TR, et al. Unbiased Label-Free Quantitative Proteomics of Cells Expressing Amyotrophic Lateral Sclerosis (ALS) Mutations in Reveals Activation of the Apoptosis Pathway: A Workflow to Screen Pathogenic Gene Mutations. Frontiers in Molecular Neuroscience. 14: 627740. PMID 33986643 DOI: 10.3389/fnmol.2021.627740   
2021 Zink IA, Fouqueau T, Tarrason Risa G, Werner F, Baum B, Bläsi U, Schleper C. Comparative CRISPR type III-based knockdown of essential genes in hyperthermophilic and the evasion of lethal gene silencing. Rna Biology. 18: 421-434. PMID 32957821 DOI: 10.1080/15476286.2020.1813411   
2021 Golicz AA, Allu AD, Li W, Lohani N, Singh MB, Bhalla PL. A dynamic intron retention program regulates the expression of several hundred genes during pollen meiosis. Plant Reproduction. PMID 34019149 DOI: 10.1007/s00497-021-00411-6   
2021 Anreiter I, Allen AM, Vasquez OE, To L, Douglas SJ, Alvarez JV, Ewer J, Sokolowski MB. The gene plays a vital role at the start of metamorphosis for subsequent adult emergence. Journal of Neurogenetics. 1-13. PMID 33944658 DOI: 10.1080/01677063.2021.1914608   
2021 Cui X, Gao K, Wang L, Lv M, Li Z, Zheng D, Wu W, Yao W, Ding L, Li X, Zhu JK, Zhang H. General Control Non-derepressible 1 (AtGCN1) Is Important for Flowering Time, Plant Growth, Seed Development, and the Transcription/Translation of Specific Genes in . Frontiers in Plant Science. 12: 630311. PMID 33868334 DOI: 10.3389/fpls.2021.630311   
2021 Tang HY, Goldman AR, Zhang X, Speicher DW, Dang CV. Measuring MYC-Mediated Metabolism in Tumorigenesis. Methods in Molecular Biology (Clifton, N.J.). 2318: 231-239. PMID 34019293 DOI: 10.1007/978-1-0716-1476-1_11   
2021 Zhang X, Wang Y, Zhang S, Kong X, Liu F, Zhang Z. RNAi-Mediated Silencing of the Chitinase 5 Gene for Fall Webworm () Can Inhibit Larval Molting Depending on the Timing of dsRNA Injection. Insects. 12. PMID 33946562 DOI: 10.3390/insects12050406   
2021 Yeung TK, Lau HW, Ma HT, Poon RYC. One-step multiplex toolkit for efficient generation of conditional gene silencing human cell lines. Molecular Biology of the Cell. mbcE21020051. PMID 33979199 DOI: 10.1091/mbc.E21-02-0051   
2021 Zhao D, Zheng C, Shi F, Xu Y, Zong S, Tao J. Expression analysis of genes related to cold tolerance in . Peerj. 9: e10864. PMID 33854828 DOI: 10.7717/peerj.10864   
2021 Wang SS, Chen D, He JJ, Zheng WB, Tian AL, Zhao GH, Elsheikha HM, Zhu XQ. -Derived Excretory-Secretory Products Alter the Expression of mRNAs, miRNAs, lncRNAs, and circRNAs Involved in the Immune Response and Metabolism in Goat Peripheral Blood Mononuclear Cells. Frontiers in Immunology. 12: 653755. PMID 33912180 DOI: 10.3389/fimmu.2021.653755   
2021 Hu J, Bourne RA, McGrath BC, Lin A, Pei Z, Cavener DR. Co-opting regulation bypass repair as a gene correction strategy for monogenic diseases. Molecular Therapy : the Journal of the American Society of Gene Therapy. PMID 33892188 DOI: 10.1016/j.ymthe.2021.04.017   
2021 Qu X, Wu S, Gao J, Qin Z, Zhou Z, Liu J. Weighted gene co expression network analysis (WGCNA) with key pathways and hub-genes related to micro RNAs in ischemic stroke. Iet Systems Biology. 15: 93-100. PMID 33880887 DOI: 10.1049/syb2.12016   
2021 Wang H, Chen JG, Chang Y. Identification, Expression, and Interaction Analysis of Ovate Family Proteins in Reveals a Role of PtOFP1 Regulating Drought Stress Response. Frontiers in Plant Science. 12: 650109. PMID 33959141 DOI: 10.3389/fpls.2021.650109   
2021 Ma X, Denyer T, Javelle M, Feller A, Timmermans MCP. Genome-wide analysis of plant miRNA action clarifies levels of regulatory dynamics across developmental contexts. Genome Research. PMID 33863807 DOI: 10.1101/gr.270918.120   
2021 Wang P, Yan Z, Zong X, Yan Q, Zhang J. Genome-Wide Analysis and Expression Profiles of the Dof Family in under Temperature, Salt and ABA Treatment. Plants (Basel, Switzerland). 10. PMID 33922432 DOI: 10.3390/plants10050850   
2021 Lee SR, Pollard DA, Galati DF, Kelly ML, Miller B, Mong C, Morris MN, Roberts-Nygren K, Kapler GM, Zinkgraf M, Dang HQ, Branham E, Tessier E, Yoshiyama C, Sasser J, et al. Disruption of a ∼23-24 nucleotide small RNA pathway elevates DNA damage responses in . Molecular Biology of the Cell. mbcE20100631. PMID 34010017 DOI: 10.1091/mbc.E20-10-0631   
2021 Fujita S, Tsumori Y, Makino Y, Saito M, Kawano M. Development of multiplexing gene silencing system using conditionally induced polycistronic synthetic antisense RNAs in Escherichia coli. Biochemical and Biophysical Research Communications. 556: 163-170. PMID 33845307 DOI: 10.1016/j.bbrc.2021.03.152   
2021 Wang Y, Liu A. Genomic Characterization and Expression Analysis of the SnRK Family Genes in Kimura et Migo (Orchidaceae). Plants (Basel, Switzerland). 10. PMID 33802577 DOI: 10.3390/plants10030479   
2021 Jin H, Yu X, Yang Q, Fu X, Yuan F. Transcriptome analysis identifies differentially expressed genes in the progenies of a cross between two low phytic acid soybean mutants. Scientific Reports. 11: 8740. PMID 33888781 DOI: 10.1038/s41598-021-88055-4   
2021 Dwyer K, Agarwal N, Pile L, Ansari A. Gene Architecture Facilitates Intron-Mediated Enhancement of Transcription. Frontiers in Molecular Biosciences. 8: 669004. PMID 33968994 DOI: 10.3389/fmolb.2021.669004   
2021 Xu Y, Wang H, Lu Z, Wen L, Gu Z, Zhang X, Yu G, Wang H, Zhou C, Han L. Developmental Analysis of the GATA Factor Mutants in Reveals Their Roles in Nodule Formation. Frontiers in Plant Science. 12: 616776. PMID 33995430 DOI: 10.3389/fpls.2021.616776   
2021 Abreu FC, Mota EA, Pereira RV, Oliveira VF, Costa MP, Gomes MS, Jannotti-Passos LK, Borges WC, Guerra-Sá R. Differential expression profiles of miRNAs and their putative targets in Schistosoma mansoni during its life cycle. Memorias Do Instituto Oswaldo Cruz. 116: e200326. PMID 34008737 DOI: 10.1590/0074-02760200326   
2021 Cao Y, Kong LB, Huang X, Li XL, Chang JL, Gao Y. [Screening of key genes and pathways of ischemic stroke and prediction of traditional Chinese medicines based on bioinformatics]. Zhongguo Zhong Yao Za Zhi = Zhongguo Zhongyao Zazhi = China Journal of Chinese Materia Medica. 46: 1803-1812. PMID 33982485 DOI: 10.19540/j.cnki.cjcmm.20210218.401   
2021 Pillay S, Takahashi H, Carninci P, Kanhere A. Antisense RNAs during early vertebrate development are divided in groups with distinct features. Genome Research. PMID 33795334 DOI: 10.1101/gr.262964.120   
2021 Gao B, Sun Q. Programming gene expression in multicellular organisms for physiology modulation through engineered bacteria. Nature Communications. 12: 2689. PMID 33976154 DOI: 10.1038/s41467-021-22894-7   
2021 Kim T, Weinberg B, Wong W, Lu TK. Scalable recombinase-based gene expression cascades. Nature Communications. 12: 2711. PMID 33976199 DOI: 10.1038/s41467-021-22978-4   
2021 Arora K, Rai AK, Devanna BN, Dubey H, Narula A, Sharma TR. Deciphering the role of microRNAs during gene mediated resistance response in rice. Physiology and Molecular Biology of Plants : An International Journal of Functional Plant Biology. 27: 633-647. PMID 33854289 DOI: 10.1007/s12298-021-00960-0   
2021 Akinci E, Hamilton MC, Khowpinitchai B, Sherwood RI. Using CRISPR to understand and manipulate gene regulation. Development (Cambridge, England). 148. PMID 33913466 DOI: 10.1242/dev.182667   
2021 Chen Y, Zhong D, Yang X, Zhao Y, Dai L, Zeng D, Wang Q, Gao L, Li S. Encoding a Ferredoxin Protein With C-Terminus Extension Is Indispensable for Maize Growth. Frontiers in Plant Science. 12: 646359. PMID 33968104 DOI: 10.3389/fpls.2021.646359   
2021 Gomes SC, Ferreira MR, Tavares AF, Silva IN, Becker JD, Moreira LM. A histone-like nucleoid structuring protein regulates several virulence traits in . Applied and Environmental Microbiology. PMID 33931418 DOI: 10.1128/AEM.00369-21   
2021 Triozzi P, Schmidt HW, Dervinis C, Kirst M, Conde D. Simple, efficient and open-source CRISPR/Cas9 strategy for multi-site genome editing in Populus tremula × alba. Tree Physiology. PMID 33960379 DOI: 10.1093/treephys/tpab066   
2021 Shen J, Zhang H, Lu C, Gu J, Zhang Y, Hu J. Microarray analysis of the time-dependent expression profiles of long non-coding RNAs in the progression of vein graft stenotic disease. Experimental and Therapeutic Medicine. 21: 635. PMID 33968166 DOI: 10.3892/etm.2021.10067   
2021 Krishnatreya DB, Baruah PM, Dowarah B, Chowrasia S, Mondal TK, Agarwala N. Genome-wide identification, evolutionary relationship and expression analysis of AGO, DCL and RDR family genes in tea. Scientific Reports. 11: 8679. PMID 33883595 DOI: 10.1038/s41598-021-87991-5   
2021 Yang X, Wei X, Yang J, Du T, Yin C, Fu B, Huang M, Liang J, Gong P, Liu S, Xie W, Guo Z, Wang S, Wu Q, Nauen R, et al. Epitranscriptomic regulation of insecticide resistance. Science Advances. 7. PMID 33952517 DOI: 10.1126/sciadv.abe5903   
2021 Åkesson J, Lubovac-Pilav Z, Magnusson R, Gustafsson M. ComHub: Community predictions of hubs in gene regulatory networks. Bmc Bioinformatics. 22: 58. PMID 33563211 DOI: 10.1186/s12859-021-03987-y   
2021 Panigrahi A, O'Malley BW. Mechanisms of enhancer action: the known and the unknown. Genome Biology. 22: 108. PMID 33858480 DOI: 10.1186/s13059-021-02322-1   
2021 Trinh BQ, Ummarino S, Zhang Y, Ebralidze AK, Bassal MA, Nguyen TM, Heller G, Coffey R, Tenen DE, van der Kouwe E, Fabiani E, Gurnari C, Wu CS, Espinosa Angarcia VE, Yang H, et al. Myeloid lncRNA LOUP Mediates Opposing Regulatory Effects of RUNX1 and RUNX1-ETO in t(8;21) AML. Blood. PMID 33971010 DOI: 10.1182/blood.2020007920   
2021 Khan I, Khan S, Zhang Y, Zhou J. Genome-wide analysis and functional characterization of the Dof transcription factor family in rice (Oryza sativa L.). Planta. 253: 101. PMID 33856565 DOI: 10.1007/s00425-021-03627-y   
2021 Han Y, Zhu L, Li L, Wang Y, Zhao M, Wang K, Sun C, Chen J, Liu L, Chen P, Lei J, Wang Y, Zhang M. Characteristics of RNA alternative splicing and its potential roles in ginsenoside biosynthesis in a single plant of ginseng, Panax ginseng C.A. Meyer. Molecular Genetics and Genomics : Mgg. PMID 34008042 DOI: 10.1007/s00438-021-01792-z   
2021 Lohani N, Babaei S, Singh MB, Bhalla PL. Genome-Wide Identification and Comparative Analysis of Gene Family in . Plants (Basel, Switzerland). 10. PMID 33916912 DOI: 10.3390/plants10040709   
2021 Liu F, Li H, Wu J, Wang B, Tian N, Liu J, Sun X, Wu H, Huang Y, Lü P, Cheng C. Genome-wide identification and expression pattern analysis of lipoxygenase gene family in banana. Scientific Reports. 11: 9948. PMID 33976263 DOI: 10.1038/s41598-021-89211-6   
2021 Wang Y, Wang X, Huang X, Zhang J, Hu J, Qi Y, Xiang B, Wang Q. Integrated Genomic and Transcriptomic Analysis reveals key genes for predicting dual-phenotype Hepatocellular Carcinoma Prognosis. Journal of Cancer. 12: 2993-3010. PMID 33854600 DOI: 10.7150/jca.56005   
2021 Gao Y, Kim JH, Jeong IH, Clark JM, Lee SH. Transcriptomic identification and characterization of genes commonly responding to sublethal concentrations of six different insecticides in the common fruit fly, Drosophila melanogaster. Pesticide Biochemistry and Physiology. 175: 104852. PMID 33993970 DOI: 10.1016/j.pestbp.2021.104852   
2021 Wan Y, Li D, Deng M, Liu Z, Liu L, Wang F. Comprehensive Transcriptome Analysis of mRNA Expression Patterns of Early Embryo Development in Goat under Hypoxic and Normoxic Conditions. Biology. 10. PMID 33924908 DOI: 10.3390/biology10050381   
2021 Akerman I, Maestro MA, De Franco E, Grau V, Flanagan S, García-Hurtado J, Mittler G, Ravassard P, Piemonti L, Ellard S, Hattersley AT, Ferrer J. Neonatal diabetes mutations disrupt a chromatin pioneering function that activates the human insulin gene. Cell Reports. 35: 108981. PMID 33852861 DOI: 10.1016/j.celrep.2021.108981   
2021 Fu Y, Sun H. Biogenesis, cellular effects, and biomarker value of circHIPK3. Cancer Cell International. 21: 256. PMID 33975598 DOI: 10.1186/s12935-021-01956-2   
2021 Wei T, Hao W, Tang L, Wu H, Huang S, Yang Y, Qian N, Liu J, Yang W, Duan X. Comprehensive RNA-Seq Analysis of Potential Therapeutic Targets of Gan-Dou-Fu-Mu Decoction for Treatment of Wilson Disease Using a Toxic Milk Mouse Model. Frontiers in Pharmacology. 12: 622268. PMID 33935715 DOI: 10.3389/fphar.2021.622268