Masahito Yamagata - Publications

Harvard University, Cambridge, MA, United States 
synapse formation

63 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Yamagata M, Yan W, Sanes JR. A cell atlas of the chick retina based on single cell transcriptomics. Elife. 10. PMID 33393903 DOI: 10.7554/eLife.63907  1
2018 Yamagata M, Sanes JR. Expression and Roles of the Immunoglobulin Superfamily Recognition Molecule Sidekick1 in Mouse Retina. Frontiers in Molecular Neuroscience. 11: 485. PMID 30687002 DOI: 10.3389/fnmol.2018.00485  1
2018 Duan X, Krishnaswamy A, Laboulaye MA, Liu J, Peng YR, Yamagata M, Toma K, Sanes JR. Cadherin Combinations Recruit Dendrites of Distinct Retinal Neurons to a Shared Interneuronal Scaffold. Neuron. PMID 30197236 DOI: 10.1016/j.neuron.2018.08.019  1
2018 Yamagata M, Duan X, Sanes JR. Cadherins Interact With Synaptic Organizers to Promote Synaptic Differentiation. Frontiers in Molecular Neuroscience. 11: 142. PMID 29760652 DOI: 10.3389/fnmol.2018.00142  1
2018 Basu R, Duan X, Taylor MR, Martin EA, Muralidhar S, Wang Y, Gangi-Wellman L, Das SC, Yamagata M, West PJ, Sanes JR, Williams ME. Heterophilic Type II Cadherins Are Required for High-Magnitude Synaptic Potentiation in the Hippocampus. Neuron. 98: 658-668. PMID 29723502 DOI: 10.1016/j.neuron.2018.04.010  1
2018 Yamagata M, Sanes JR. Reporter-nanobody fusions (RANbodies) as versatile, small, sensitive immunohistochemical reagents. Proceedings of the National Academy of Sciences of the United States of America. PMID 29440485 DOI: 10.1073/pnas.1722491115  1
2017 Basu R, Duan X, Taylor MR, Martin EA, Muralidhar S, Wang Y, Gangi-Wellman L, Das SC, Yamagata M, West PJ, Sanes JR, Williams ME. Heterophilic Type II Cadherins Are Required for High-Magnitude Synaptic Potentiation in the Hippocampus. Neuron. 96: 160-176.e8. PMID 28957665 DOI: 10.1016/j.neuron.2017.09.009  1
2017 Cohen O, Vald L, Yamagata M, Sanes JR, Klar A. Roles of DSCAM in axonal decussation and fasciculation of chick spinal interneurons. The International Journal of Developmental Biology. 61: 235-244. PMID 28621421 DOI: 10.1387/ijdb.160235ak  1
2016 Goodman KM, Yamagata M, Jin X, Mannepalli S, Katsamba PS, Ahlsén G, Sergeeva AP, Honig B, Sanes JR, Shapiro L. Molecular basis of sidekick-mediated cell-cell adhesion and specificity. Elife. 5. PMID 27644106 DOI: 10.7554/eLife.19058  1
2016 Joesch M, Mankus D, Yamagata M, Shahbazi A, Shalek R, Suissa-Peleg A, Meister M, Lichtman JW, Scheirer WJ, Sanes JR. Reconstruction of genetically identified neurons imaged by serial-section electron microscopy. Elife. 5. PMID 27383271 DOI: 10.7554/eLife.15015  1
2016 Martell JD, Yamagata M, Deerinck TJ, Phan S, Kwa CG, Ellisman MH, Sanes JR, Ting AY. A split horseradish peroxidase for the detection of intercellular protein-protein interactions and sensitive visualization of synapses. Nature Biotechnology. PMID 27240195 DOI: 10.1038/nbt.3563  1
2016 Rousso DL, Qiao M, Kagan RD, Yamagata M, Palmiter RD, Sanes JR. Two Pairs of ON and OFF Retinal Ganglion Cells Are Defined by Intersectional Patterns of Transcription Factor Expression. Cell Reports. PMID 27210758 DOI: 10.1016/j.celrep.2016.04.069  1
2016 Poliak S, Norovich AL, Yamagata M, Sanes JR, Jessell TM. Muscle-type Identity of Proprioceptors Specified by Spatially Restricted Signals from Limb Mesenchyme. Cell. 164: 512-25. PMID 26824659 DOI: 10.1016/j.cell.2015.12.049  1
2015 Krishnaswamy A, Yamagata M, Duan X, Hong YK, Sanes JR. Sidekick 2 directs formation of a retinal circuit that detects differential motion. Nature. 524: 466-70. PMID 26287463 DOI: 10.1038/nature14682  1
2015 Krishnaswamy A, Yamagata M, Duan X, Hong YK, Sanes JR. Sidekick 2 directs formation of a retinal circuit that detects differential motion Nature. 524: 466-470. DOI: 10.1038/nature14682  1
2012 Yamagata M, Sanes JR. Expanding the Ig superfamily code for laminar specificity in retina: expression and role of contactins. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 14402-14. PMID 23055510 DOI: 10.1523/JNEUROSCI.3193-12.2012  1
2012 Yamagata M, Sanes JR. Transgenic strategy for identifying synaptic connections in mice by fluorescence complementation (GRASP). Frontiers in Molecular Neuroscience. 5: 18. PMID 22355283 DOI: 10.3389/fnmol.2012.00018  1
2011 Kay JN, De la Huerta I, Kim IJ, Zhang Y, Yamagata M, Chu MW, Meister M, Sanes JR. Retinal ganglion cells with distinct directional preferences differ in molecular identity, structure, and central projections. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 7753-62. PMID 21613488 DOI: 10.1523/JNEUROSCI.0907-11.2011  1
2010 Yamagata M, Sanes JR. Synaptic localization and function of Sidekick recognition molecules require MAGI scaffolding proteins. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 3579-88. PMID 20219992 DOI: 10.1523/JNEUROSCI.6319-09.2010  1
2010 Yamagata M. Lamina-Specific Neuronal Connections Encyclopedia of Neuroscience. 299-305. DOI: 10.1016/B978-008045046-9.00371-5  1
2009 Sanes JR, Yamagata M. Many paths to synaptic specificity. Annual Review of Cell and Developmental Biology. 25: 161-95. PMID 19575668 DOI: 10.1146/annurev.cellbio.24.110707.175402  1
2009 Hong YK, Yamagata M. Molecular basis of lamina-specific synaptic connections in the retina: Sidekick immunoglobulin superfamily molecules The Sticky Synapse: Cell Adhesion Molecules and Their Role in Synapse Formation and Maintenance. 223-234. DOI: 10.1007/978-0-387-92708-4_10  1
2008 Kim IJ, Zhang Y, Yamagata M, Meister M, Sanes JR. Molecular identification of a retinal cell type that responds to upward motion. Nature. 452: 478-82. PMID 18368118 DOI: 10.1038/nature06739  1
2008 Yamagata M, Sanes JR. Dscam and Sidekick proteins direct lamina-specific synaptic connections in vertebrate retina. Nature. 451: 465-9. PMID 18216854 DOI: 10.1038/nature06469  1
2008 Matsumura H, Yoneda M, Dodo Y, Oxenham MF, Cuong NL, Thuy NK, Dung LM, Long VT, Yamagata M, Sawada J, Shinoda K, Takigawa W. Terminal Pleistocene human skeleton from Hang Cho Cave, northern Vietnam: implications for the biological affinities of Hoabinhian people Anthropological Science. 116: 201-217. DOI: 10.1537/ase.070416  0.4
2007 Hiraishi H, Yamagata M, Yoneda M, Shimada T. [Guideline for prophylaxis and treatment of NSAID-associated gastric ulcerations]. Nihon Rinsho. Japanese Journal of Clinical Medicine. 65: 1812-7. PMID 17926529  0.4
2007 Koike T, Shimada T, Fujii Y, Chen G, Tabei K, Namatame T, Yamagata M, Tajima A, Yoneda M, Terano A, Hiraishi H. Up-regulation of TFF1 (pS2) expression by TNF-alpha in gastric epithelial cells. Journal of Gastroenterology and Hepatology. 22: 936-42. PMID 17565651 DOI: 10.1111/j.1440-1746.2007.04861.x  0.4
2007 Shimada T, Koike T, Yamagata M, Yoneda M, Hiraishi H. Regulation of TFF3 expression by homeodomain protein CDX2. Regulatory Peptides. 140: 81-7. PMID 17182120 DOI: 10.1016/j.regpep.2006.11.014  0.4
2007 Shimada T, Fujii Y, Koike T, Tabei K, Namatame T, Yamagata M, Tajima A, Yoneda M, Terano A, Hiraishi H. Peroxisome proliferator-activated receptor gamma (PPARgamma) regulates trefoil factor family 2 (TFF2) expression in gastric epithelial cells. The International Journal of Biochemistry & Cell Biology. 39: 626-37. PMID 17118693 DOI: 10.1016/j.biocel.2006.10.015  0.4
2006 Yamagata M, Weiner JA, Dulac C, Roth KA, Sanes JR. Labeled lines in the retinotectal system: markers for retinorecipient sublaminae and the retinal ganglion cell subsets that innervate them. Molecular and Cellular Neurosciences. 33: 296-310. PMID 16978878 DOI: 10.1016/j.mcn.2006.08.001  1
2005 Yamagata M, Sanes JR. Versican in the developing brain: lamina-specific expression in interneuronal subsets and role in presynaptic maturation. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 25: 8457-67. PMID 16162928 DOI: 10.1523/JNEUROSCI.1976-05.2005  1
2005 Yamagata M. [Synaptic adhesion molecules for neuronal circuit assembly]. Seikagaku. the Journal of Japanese Biochemical Society. 77: 431-5. PMID 15952335  1
2003 Yamagata M, Sanes JR, Weiner JA. Synaptic adhesion molecules. Current Opinion in Cell Biology. 15: 621-32. PMID 14519398 DOI: 10.1016/S0955-0674(03)00107-8  1
2002 Yamagata M, Weiner JA, Sanes JR. Sidekicks: synaptic adhesion molecules that promote lamina-specific connectivity in the retina. Cell. 110: 649-60. PMID 12230981 DOI: 10.1016/S0092-8674(02)00910-8  1
2002 Ohtori S, Yamamoto T, Ino H, Hanaoka E, Shinbo J, Ozaki T, Takada N, Nakamura Y, Chiba T, Nakagawara A, Sakiyama S, Sakashita Y, Takahashi K, Tanaka K, Yamagata M, et al. Differential screening-selected gene aberrative in neuroblastoma protein modulates inflammatory pain in the spinal dorsal horn. Neuroscience. 110: 579-86. PMID 11906795  0.4
2001 Suzuki H, Takahashi K, Yamagata M, Shimizu S, Moriya H, Yamazaki M. Spatial and temporal collagen gene expression in lumbar intertransverse fusion in the rabbit. The Journal of Bone and Joint Surgery. British Volume. 83: 760-6. PMID 11476319  0.4
1999 Yamagata M, Mai A, Pollerberg GE, Noda M. Regulatory interrelations among topographic molecules CBF1, CBF2 and EphA3 in the developing chick retina. Development, Growth & Differentiation. 41: 575-87. PMID 10545030 DOI: 10.1046/j.1440-169x.1999.00462.x  1
1999 Sanes JR, Yamagata M. Formation of lamina-specific synaptic connections. Current Opinion in Neurobiology. 9: 79-87. PMID 10072367 DOI: 10.1016/S0959-4388(99)80010-5  1
1998 Yamagata M, Noda M. The winged-helix transcription factor CWH-3 is expressed in developing neural crest cells. Neuroscience Letters. 249: 33-6. PMID 9672382 DOI: 10.1016/S0304-3940(98)00385-1  1
1998 Yamagata M, Hasuda K, Stamato T, Tannock IF. The contribution of lactic acid to acidification of tumours: studies of variant cells lacking lactate dehydrogenase. British Journal of Cancer. 77: 1726-31. PMID 9667639  1
1997 Yamagata M. Anti-adhesive proteoglycans Trends in Glycoscience and Glycotechnology. 9.  1
1996 Yuasa J, Hirano S, Yamagata M, Noda M. Visual projection map specified by topographic expression of transcription factors in the retina. Nature. 382: 632-5. PMID 8757134 DOI: 10.1038/382632a0  1
1996 Leber SM, Yamagata M, Sanes JR. Gene transfer using replication-defective retroviral and adenoviral vectors. Methods in Cell Biology. 51: 161-83. PMID 8722476  1
1996 Yamagata M, Tannock IF. The chronic administration of drugs that inhibit the regulation of intracellular pH: in vitro and anti-tumour effects. British Journal of Cancer. 73: 1328-34. PMID 8645575  1
1995 Yamagata M, Sanes JR. Target-independent diversification and target-specific projection of chemically defined retinal ganglion cell subsets. Development (Cambridge, England). 121: 3763-76. PMID 8582286  1
1995 Yamagata M, Sanes JR. Lamina-specific cues guide outgrowth and arborization of retinal axons in the optic tectum. Development (Cambridge, England). 121: 189-200. PMID 7867499  1
1995 Yamagata M, Herman JP, Sanes JR. Lamina-specific expression of adhesion molecules in developing chick optic tectum. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 15: 4556-71. PMID 7790923  1
1994 Yamagata M, Merlie JP, Sanes JR. Interspecific comparisons reveal conserved features of the Drosophila Toll protein. Gene. 139: 223-8. PMID 8112609 DOI: 10.1016/0378-1119(94)90760-9  1
1994 Yamagata M, Jaye DL, Sanes JR. Gene transfer to avian embryos with a recombinant adenovirus. Developmental Biology. 166: 355-9. PMID 7958459 DOI: 10.1006/dbio.1994.1321  1
1994 Yamagata M, Kimata K. Repression of a malignant cell-substratum adhesion phenotype by inhibiting the production of the anti-adhesive proteoglycan, PG-M/versican. Journal of Cell Science. 107: 2581-90. PMID 7531202  1
1993 Yamagata M, Shinomura T, Kimata K. Tissue variation of two large chondroitin sulfate proteoglycans (PG-M/versican and PG-H/aggrecan) in chick embryos. Anatomy and Embryology. 187: 433-44. PMID 8342790 DOI: 10.1007/BF00174419  1
1993 Yamagata M, Saga S, Kato M, Bernfield M, Kimata K. Selective distributions of proteoglycans and their ligands in pericellular matrix of cultured fibroblasts. Implications for their roles in cell-substratum adhesion. Journal of Cell Science. 106: 55-65. PMID 8270643  1
1992 Yamagata M, Kimata K. [Chimeric collagens: functional modulators for major collagen fibrils]. Seikagaku. the Journal of Japanese Biochemical Society. 64: 26-32. PMID 1607745  1
1991 Yamagata M, Yamada KM, Yamada SS, Shinomura T, Tanaka H, Nishida Y, Obara M, Kimata K. The complete primary structure of type XII collagen shows a chimeric molecule with reiterated fibronectin type III motifs, von Willebrand factor A motifs, a domain homologous to a noncollagenous region of type IX collagen, and short collagenous domains with an Arg-Gly-Asp site. The Journal of Cell Biology. 115: 209-21. PMID 1918137  0.4
1991 Fernandez MS, Dennis JE, Drushel RF, Carrino DA, Kimata K, Yamagata M, Caplan AI. The dynamics of compartmentalization of embryonic muscle by extracellular matrix molecules. Developmental Biology. 147: 46-61. PMID 1879615  0.4
1990 Shinomura T, Jensen KL, Yamagata M, Kimata K, Solursh M. The distribution of mesenchyme proteoglycan (PG-M) during wing bud outgrowth. Anatomy and Embryology. 181: 227-33. PMID 2186666 DOI: 10.1007/BF00174617  1
1989 Yamagata M, Suzuki S, Akiyama SK, Yamada KM, Kimata K. Regulation of cell-substrate adhesion by proteoglycans immobilized on extracellular substrates. The Journal of Biological Chemistry. 264: 8012-8. PMID 2470739  1
1988 Nishida Y, Hata M, Ayaki T, Ryo H, Yamagata M, Shimizu K, Nishizuka Y. Proliferation of both somatic and germ cells is affected in the Drosophila mutants of raf proto-oncogene. The Embo Journal. 7: 775-81. PMID 3135183  1
1988 Yoneda M, Shimizu S, Nishi Y, Yamagata M, Suzuki S, Kimata K. Hyaluronic acid-dependent change in the extracellular matrix of mouse dermal fibroblasts that is conducive to cell proliferation. Journal of Cell Science. 90: 275-86. PMID 3073165  0.4
1988 Yoneda M, Yamagata M, Suzuki S, Kimata K. Hyaluronic acid modulates proliferation of mouse dermal fibroblasts in culture. Journal of Cell Science. 90: 265-73. PMID 2854541  1
1987 Yamagata M, Kimata K, Oike Y, Tani K, Maeda N, Yoshida K, Shimomura Y, Yoneda M, Suzuki S. A monoclonal antibody that specifically recognizes a glucuronic acid 2-sulfate-containing determinant in intact chondroitin sulfate chain. The Journal of Biological Chemistry. 262: 4146-52. PMID 2435733  0.4
1986 Yamagata M, Yamada KM, Yoneda M, Suzuki S, Kimata K. Chondroitin sulfate proteoglycan (PG-M-like proteoglycan) is involved in the binding of hyaluronic acid to cellular fibronectin. The Journal of Biological Chemistry. 261: 13526-35. PMID 3759976  1
1986 Kimata K, Oike Y, Tani K, Shinomura T, Yamagata M, Uritani M, Suzuki S. A large chondroitin sulfate proteoglycan (PG-M) synthesized before chondrogenesis in the limb bud of chick embryo. The Journal of Biological Chemistry. 261: 13517-25. PMID 3759975  0.4
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