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Madalena C. Chaves, Ph.D. - Publications

Affiliations: 
2003 Rutgers University, New Brunswick, New Brunswick, NJ, United States 
Area:
Mathematics
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42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Chaves M, de Jong H. Qualitative Modeling, Analysis and Control of Synthetic Regulatory Circuits. Methods in Molecular Biology (Clifton, N.J.). 2229: 1-40. PMID 33405215 DOI: 10.1007/978-1-0716-1032-9_1  0.365
2019 Almeida S, Chaves M, Delaunay F. Transcription-based circadian mechanism controls the duration of molecular clock states in response to signaling inputs. Journal of Theoretical Biology. 110015. PMID 31539528 DOI: 10.1016/J.Jtbi.2019.110015  0.365
2018 Chaves M, Tournier L. Analysis Tools for Interconnected Boolean Networks With Biological Applications. Frontiers in Physiology. 9: 586. PMID 29896108 DOI: 10.3389/Fphys.2018.00586  0.467
2018 Poignard C, Chaves M, Gouzé J. A Stability Result for Periodic Solutions of Nonmonotonic Smooth Negative Feedback Systems Siam Journal On Applied Dynamical Systems. 17: 1091-1116. DOI: 10.1137/17M1141205  0.376
2017 Figueiredo D, Martins MA, Chaves M. Applying Differential dynamic logic to reconfigurable biological networks. Mathematical Biosciences. PMID 28610888 DOI: 10.1016/J.Mbs.2017.05.012  0.463
2017 Almeida S, Chaves M, Delaunay F, Feillet C. A comprehensive reduced model of the mammalian cell cycle Ifac-Papersonline. 50: 12617-12622. DOI: 10.1016/J.Ifacol.2017.08.2204  0.359
2016 Poignard C, Chaves M, Gouzé JL. Periodic oscillations for nonmonotonic smooth negative feedback circuits Siam Journal On Applied Dynamical Systems. 15: 257-286. DOI: 10.1137/15M1033368  0.417
2016 Chaves M, Gouzé J. 2D piecewise affine models approximate real continuous dynamics up to invariant sets Ifac-Papersonline. 49: 1060-1065. DOI: 10.1016/J.Ifacol.2016.10.308  0.372
2015 Oyarzun DA, Chaves M. Design of a bistable switch to control cellular uptake Journal of the Royal Society Interface. 12. DOI: 10.1098/Rsif.2015.0618  0.359
2015 Chaves M, Carta A. Attractor computation using interconnected Boolean networks: Testing growth rate models in E. Coli Theoretical Computer Science. 599: 47-63. DOI: 10.1016/J.Tcs.2014.06.021  0.459
2015 Carta A, Chaves M, Gouzé JL. Continuous-switch piecewise quadratic models of biological networks: Application to bacterial growth Automatica. 61: 164-172. DOI: 10.1016/J.Automatica.2015.07.031  0.395
2014 Abou-Jaoudé W, Chaves M, Gouzé JL. Links between topology of the transition graph and limit cycles in a two-dimensional piecewise affine biological model Journal of Mathematical Biology. 69: 1461-1495. PMID 24253252 DOI: 10.1007/S00285-013-0735-X  0.445
2013 Chaves M, Preto M. Hierarchy of models: From qualitative to quantitative analysis of circadian rhythms in cyanobacteria Chaos. 23: 25113. PMID 23822511 DOI: 10.1063/1.4810922  0.399
2013 Chaves M, Farcot E, Gouzé J. Probabilistic approach for predicting periodic orbits in piecewise affine differential models. Bulletin of Mathematical Biology. 75: 967-987. PMID 23054666 DOI: 10.1007/S11538-012-9773-6  0.396
2013 Carta A, Chaves M, Gouzé J. A class of Switched Piecewise Quadratic Systems for coupling gene expression with growth rate in bacteria Ifac Proceedings Volumes. 46: 271-276. DOI: 10.3182/20130904-3-Fr-2041.00140  0.371
2013 Tournier L, Chaves M. Interconnection of asynchronous Boolean networks, asymptotic and transient dynamics Automatica. 49: 884-893. DOI: 10.1016/J.Automatica.2013.01.015  0.451
2012 Oyarzún DA, Chaves M, Hoff-Hoffmeyer-Zlotnik M. Multistability and oscillations in genetic control of metabolism. Journal of Theoretical Biology. 295: 139-153. PMID 22137968 DOI: 10.1016/J.Jtbi.2011.11.017  0.371
2012 Breindl C, Chaves M, Gouzé J, Allgöwer F. Structure estimation for unate Boolean models of gene regulation networks Ifac Proceedings Volumes. 45: 1725-1730. DOI: 10.3182/20120711-3-Be-2027.00278  0.42
2011 Abou-Jaoudé W, Chaves M, Gouzé J. A theoretical exploration of birhythmicity in the p53-Mdm2 network. Plos One. 6. PMID 21340030 DOI: 10.1371/Journal.Pone.0017075  0.439
2011 Oyarzún DA, Chaves M. Global Gene Regulation in Metabolic Networks Ifac Proceedings Volumes. 44: 14838-14843. DOI: 10.3182/20110828-6-It-1002.01406  0.392
2011 Abou-Jaoude W, Chaves M, Gouze J. Mechanisms for coexistence of two limit cycles in a biochemical model1 Ifac Proceedings Volumes. 44: 8378-8383. DOI: 10.3182/20110828-6-It-1002.00749  0.396
2011 Chaves M, Gouzé J. Exact control of genetic networks in a qualitative framework: The bistable switch example Automatica. 47: 1105-1112. DOI: 10.1016/J.Automatica.2011.01.071  0.383
2010 Chaves M, Tournier L, Gouzé J. Comparing Boolean and Piecewise Affine Differential Models for Genetic Networks Acta Biotheoretica. 58: 217-232. PMID 20665073 DOI: 10.1007/S10441-010-9097-6  0.461
2010 Ndiaye I, Chaves M, Gouzé J. Oscillations induced by different timescales in signal transduction modules regulated by slowly evolving protein-protein interactions. Iet Systems Biology. 4: 263-276. PMID 20632776 DOI: 10.1049/Iet-Syb.2009.0020  0.385
2010 Chaves M, Gouzé J. Qualitative Control of Genetic Networks: the Bistable Switch Example Ifac Proceedings Volumes. 43: 338-343. DOI: 10.3182/20100901-3-It-2016.00166  0.404
2010 Chaves M, Gouzé J. Piecewise Affine Models of Regulatory Genetic Networks: Review and Probabilistic Interpretation Lecture Notes in Control and Information Sciences. 407: 241-253. DOI: 10.1007/978-3-642-16135-3_20  0.382
2009 Tournier L, Chaves M. Uncovering operational interactions in genetic networks using asynchronous boolean dynamics Journal of Theoretical Biology. 260: 196-209. PMID 19524598 DOI: 10.1016/J.Jtbi.2009.06.006  0.422
2009 Dayarian A, Chaves M, Sontag ED, Sengupta AM. Shape, size, and robustness: feasible regions in the parameter space of biochemical networks. Plos Computational Biology. 5: e1000256. PMID 19119410 DOI: 10.1371/Journal.Pcbi.1000256  0.576
2009 Chaves M, Sengupta A, Sontag ED. Geometry and topology of parameter space: investigating measures of robustness in regulatory networks. Journal of Mathematical Biology. 59: 315-58. PMID 18987858 DOI: 10.1007/S00285-008-0230-Y  0.574
2009 Eissing T, Chaves M, Allgöwer F. Live and let die—A systems biology view on cell death Computers & Chemical Engineering. 33: 583-589. DOI: 10.1016/J.Compchemeng.2008.10.014  0.345
2008 Chaves M, Albert R. Studying the effect of cell division on expression patterns of the segment polarity genes Journal of the Royal Society Interface. 5. PMID 18434279 DOI: 10.1098/Rsif.2007.1345.Focus  0.359
2008 Chaves M, Eissing T, Allgower F. Bistable Biological Systems: A Characterization Through Local Compact Input-to-State Stability Ieee Transactions On Automatic Control. 53: 87-100. DOI: 10.1109/Tac.2007.911328  0.4
2007 Waldherr S, Eissing T, Chaves M, Allgöower F. Bistability preserving model reduction in apoptosis Ifac Proceedings Volumes. 40: 19-24. DOI: 10.3182/20070604-3-Mx-2914.00072  0.414
2007 Eißing T, Chaves M, Allgöwer F. Live & let die - A systems biology view on cell death Computer-Aided Chemical Engineering. 24: 927-928. DOI: 10.1016/S1570-7946(07)80178-7  0.378
2006 Sontag ED, Chaves M. Exact computation of amplification for a class of nonlinear systems arising from cellular signaling pathways Automatica. 42: 1987-1992. DOI: 10.1016/J.Automatica.2006.06.011  0.545
2005 Chaves M, Albert R, Sontag ED. Robustness and fragility of Boolean models for genetic regulatory networks. Journal of Theoretical Biology. 235: 431-49. PMID 15882705 DOI: 10.1016/J.Jtbi.2005.01.023  0.565
2005 Sontag ED, Chaves M. Computation of amplification for systems arising from cellular signaling pathways Ifac Proceedings Volumes (Ifac-Papersonline). 16: 7-12. DOI: 10.3182/20050703-6-Cz-1902.02205  0.548
2005 Chaves M. Input-to-State Stability of Rate-Controlled Biochemical Networks Siam Journal On Control and Optimization. 44: 704-727. DOI: 10.1137/S0363012903437964  0.461
2004 Chaves M, Sontag ED, Dinerstein RJ. Steady-states of receptor-ligand dynamics: a theoretical framework. Journal of Theoretical Biology. 227: 413-28. PMID 15019508 DOI: 10.1016/J.Jtbi.2003.11.019  0.516
2004 Chaves M, Sontag ED, Dinerstein RJ. Optimal length and signal amplification in weakly activated signal transduction cascades Journal of Physical Chemistry B. 108: 15311-15320. DOI: 10.1021/Jp048935F  0.499
2002 Chaves M, Sontag ED. State-estimators for Chemical Reaction Networks of Feinberg-Horn-Jackson Zero Deficiency Type European Journal of Control. 8: 343-359. DOI: 10.3166/Ejc.8.343-359  0.536
2001 Chaves M, Sontag ED. An Alternative Observer for Zero Deficiency Chemical Networks Ifac Proceedings Volumes. 34: 537-540. DOI: 10.1016/S1474-6670(17)35232-1  0.561
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