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David J. Logan, Ph.D. - Publications

Affiliations: 
2007-2016 Imaging Platform Broad Institute (MIT/Harvard) 
 2016- Internal Medicine Research Unit Pfizer, Cambridge, MA 
Website:
https://sites.google.com/site/davidjloganbroad/
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22/59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Cimini BA, Chandrasekaran SN, Kost-Alimova M, Miller L, Goodale A, Fritchman B, Byrne P, Garg S, Jamali N, Logan DJ, Concannon JB, Lardeau CH, Mouchet E, Singh S, Shafqat Abbasi H, et al. Optimizing the Cell Painting assay for image-based profiling. Nature Protocols. PMID 37344608 DOI: 10.1038/s41596-023-00840-9  0.55
2022 Way GP, Natoli T, Adeboye A, Litichevskiy L, Yang A, Lu X, Caicedo JC, Cimini BA, Karhohs K, Logan DJ, Rohban MH, Kost-Alimova M, Hartland K, Bornholdt M, Chandrasekaran SN, et al. Morphology and gene expression profiling provide complementary information for mapping cell state. Cell Systems. 13: 911-923.e9. PMID 36395727 DOI: 10.1016/j.cels.2022.10.001  0.53
2017 Hulshof FFB, Papenburg B, Vasilevich A, Hulsman M, Zhao Y, Levers M, Fekete N, de Boer M, Yuan H, Singh S, Beijer N, Bray MA, Logan DJ, Reinders M, Carpenter AE, et al. Mining for osteogenic surface topographies: In silico design to in vivo osseo-integration. Biomaterials. 137: 49-60. PMID 28535442 DOI: 10.1016/J.Biomaterials.2017.05.020  0.539
2016 Shan J, Logan DJ, Root DE, Carpenter AE, Bhatia SN. High-Throughput Platform for Identifying Molecular Factors Involved in Phenotypic Stabilization of Primary Human Hepatocytes In Vitro. Journal of Biomolecular Screening. 21: 897-911. PMID 27650791 DOI: 10.1177/1087057116660277  0.568
2016 Dordea AC, Bray MA, Allen K, Logan D, Fei F, Malhotra R, Gregory M, Carpenter AE, Buys ES. An open-source computational tool to automatically quantify immunolabeled retinal ganglion cells. Experimental Eye Research. PMID 27119563 DOI: 10.1016/J.Exer.2016.04.012  0.55
2016 Jolly AL, Luan CH, Dusel BE, Dunne SF, Winding M, Dixit VJ, Robins C, Saluk JL, Logan DJ, Carpenter AE, Sharma M, Dean D, Cohen AR, Gelfand VI. A Genome-wide RNAi Screen for Microtubule Bundle Formation and Lysosome Motility Regulation in Drosophila S2 Cells. Cell Reports. PMID 26774481 DOI: 10.1016/J.Celrep.2015.12.051  0.518
2015 Logan DJ, Shan J, Bhatia SN, Carpenter AE. Quantifying co-cultured cell phenotypes in high-throughput using pixel-based classification. Methods (San Diego, Calif.). PMID 26687239 DOI: 10.1016/J.Ymeth.2015.12.002  0.586
2015 Jolly AL, Luan CH, Dusel BE, Dunne SF, Winding M, Dixit VJ, Robins C, Saluk JL, Logan DJ, Carpenter AE, Sharma M, Dean D, Cohen AR, Gelfand VI. A Genome-wide RNAi Screen for Microtubule Bundle Formation and Lysosome Motility Regulation in Drosophila S2 Cells Cell Reports. DOI: 10.1016/j.celrep.2015.12.051  0.503
2014 Nieland TJ, Logan DJ, Saulnier J, Lam D, Johnson C, Root DE, Carpenter AE, Sabatini BL. High content image analysis identifies novel regulators of synaptogenesis in a high-throughput RNAi screen of primary neurons. Plos One. 9: e91744. PMID 24633176 DOI: 10.1371/Journal.Pone.0091744  0.538
2013 Hartwell KA, Miller PG, Mukherjee S, Kahn AR, Stewart AL, Logan DJ, Negri JM, Duvet M, Järås M, Puram R, Dancik V, Al-Shahrour F, Kindler T, Tothova Z, Chattopadhyay S, et al. Niche-based screening identifies small-molecule inhibitors of leukemia stem cells. Nature Chemical Biology. 9: 840-8. PMID 24161946 DOI: 10.1038/Nchembio.1367  0.589
2013 March S, Ng S, Velmurugan S, Galstian A, Shan J, Logan DJ, Carpenter AE, Thomas D, Sim BK, Mota MM, Hoffman SL, Bhatia SN. A microscale human liver platform that supports the hepatic stages of Plasmodium falciparum and vivax. Cell Host & Microbe. 14: 104-15. PMID 23870318 DOI: 10.1016/J.Chom.2013.06.005  0.512
2013 Shan J, Schwartz RE, Ross NT, Logan DJ, Thomas D, Duncan SA, North TE, Goessling W, Carpenter AE, Bhatia SN. Identification of small molecules for human hepatocyte expansion and iPS differentiation. Nature Chemical Biology. 9: 514-20. PMID 23728495 DOI: 10.1038/Nchembio.1270  0.561
2012 Kitami T, Logan DJ, Negri J, Hasaka T, Tolliday NJ, Carpenter AE, Spiegelman BM, Mootha VK. A chemical screen probing the relationship between mitochondrial content and cell size. Plos One. 7: e33755. PMID 22479437 DOI: 10.1371/Journal.Pone.0033755  0.563
2012 Yusuf RZ, Acharya SS, Yu VW, Saez B, Cobert JM, Doench J, Bullinger L, S'aulis D, Lee D, Palchaudhuri R, Uzosike AC, Duvet M, Logan DJ, Das S, Cook CM, et al. Aldehyde Dehydrogenase 3a2 (Aldh3a2) Represents a Distinct Metabolic Vulnerability in MLL-AF9 AML Leukemia Initiating Cells Blood. 120: 208-208. DOI: 10.1182/Blood.V120.21.208.208  0.585
2011 Kamentsky L, Jones TR, Fraser A, Bray MA, Logan DJ, Madden KL, Ljosa V, Rueden C, Eliceiri KW, Carpenter AE. Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software. Bioinformatics (Oxford, England). 27: 1179-80. PMID 21349861 DOI: 10.1093/Bioinformatics/Btr095  0.518
2011 Hartwell KA, Miller PG, Stewart AL, Kahn AR, Logan DJ, Negri J, Duvet M, Chattopadhyay S, Shterental S, Chu LP, Shieh JH, Jaeraas M, Dancik V, Narayan R, Huang C, et al. Niche-Based Screening Reveals Leukemia Stem Cell Specific Therapeutics Blood. 118: 760-760. DOI: 10.1182/Blood.V118.21.760.760  0.616
2011 Yusuf RZ, Acharya SS, Yu V, Saez B, Duvet M, Scadden E, Warraich G, Clish C, Churchill M, Doench J, Logan DJ, Cook C, Das S, Brown A, Sykes SM, et al. Distinct Metabolic Dependency of Normal and Leukemic Cells in a Mouse Model Blood. 118: 759-759. DOI: 10.1182/Blood.V118.21.759.759  0.579
2010 Cataldo AM, McPhie DL, Lange NT, Punzell S, Elmiligy S, Ye NZ, Froimowitz MP, Hassinger LC, Menesale EB, Sargent LW, Logan DJ, Carpenter AE, Cohen BM. Abnormalities in mitochondrial structure in cells from patients with bipolar disorder. The American Journal of Pathology. 177: 575-85. PMID 20566748 DOI: 10.2353/Ajpath.2010.081068  0.531
2010 Logan DJ, Carpenter AE. Screening cellular feature measurements for image-based assay development. Journal of Biomolecular Screening. 15: 840-6. PMID 20516293 DOI: 10.1177/1087057110370895  0.554
2006 Mapstone M, Logan D, Duffy CJ. Cue integration for the perception and control of self-movement in ageing and Alzheimer's disease. Brain : a Journal of Neurology. 129: 2931-44. PMID 17071922 DOI: 10.1093/Brain/Awl201  0.526
2006 Kavcic V, Fernandez R, Logan D, Duffy CJ. Neurophysiological and perceptual correlates of navigational impairment in Alzheimer's disease. Brain : a Journal of Neurology. 129: 736-46. PMID 16461482 DOI: 10.1093/Brain/Awh727  0.529
2006 Logan DJ, Duffy CJ. Cortical area MSTd combines visual cues to represent 3-D self-movement. Cerebral Cortex (New York, N.Y. : 1991). 16: 1494-507. PMID 16339087 DOI: 10.1093/Cercor/Bhj082  0.521
Low-probability matches (unlikely to be authored by this person)
2020 Yusuf R, Saez B, Sharda A, van Gastel N, Yu V, Baryawno N, Scadden EW, Acharya SS, Chattophadhyay S, Huang C, Viswanathan V, S'aulis D, Cobert J, Sykes DB, Keibler MA, ... ... Logan DJ, et al. Aldehyde dehydrogenase 3a2 protects AML cells from oxidative death and the synthetic lethality of ferroptosis inducers. Blood. PMID 32458004 DOI: 10.1182/Blood.2019001808  0.237
2016 Logan D, Kiemel T, Jeka JJ. Using a System Identification Approach to Investigate Subtask Control during Human Locomotion. Frontiers in Computational Neuroscience. 10: 146. PMID 28123365 DOI: 10.3389/fncom.2016.00146  0.14
2014 Logan D, Kiemel T, Jeka JJ. Asymmetric sensory reweighting in human upright stance. Plos One. 9: e100418. PMID 24959665 DOI: 10.1371/journal.pone.0100418  0.127
2010 Logan D, Kiemel T, Dominici N, Cappellini G, Ivanenko Y, Lacquaniti F, Jeka JJ. The many roles of vision during walking. Experimental Brain Research. 206: 337-50. PMID 20852990 DOI: 10.1007/S00221-010-2414-0  0.117
2012 Ren M, Venglat P, Qiu S, Feng L, Cao Y, Wang E, Xiang D, Wang J, Alexander D, Chalivendra S, Logan D, Mattoo A, Selvaraj G, Datla R. Target of rapamycin signaling regulates metabolism, growth, and life span in Arabidopsis. The Plant Cell. 24: 4850-74. PMID 23275579 DOI: 10.1105/Tpc.112.107144  0.117
1987 Duffel MW, Logan DJ, Ziegler DM. Cysteamine and cystamine. Methods in Enzymology. 143: 149-54. PMID 3657527 DOI: 10.1016/0076-6879(87)43027-9  0.106
2014 Logan D, Ivanenko YP, Kiemel T, Cappellini G, Sylos-Labini F, Lacquaniti F, Jeka JJ. Function dictates the phase dependence of vision during human locomotion. Journal of Neurophysiology. 112: 165-80. PMID 24717345 DOI: 10.1152/Jn.01062.2012  0.092
1997 Hoff GR, Logan DJ, Markle DF. Otolith morphology and increment validation in young Lost River and shortnose suckers Transactions of the American Fisheries Society. 126: 488-494.  0.08
2016 Naznin F, Currie G, Logan D. Exploring the impacts of factors contributing to tram-involved serious injury crashes on Melbourne tram routes. Accident; Analysis and Prevention. 94: 238-244. PMID 27352035 DOI: 10.1016/j.aap.2016.06.008  0.078
2020 Bahrololoom S, Young W, Logan D. Modelling injury severity of bicyclists in bicycle-car crashes at intersections. Accident; Analysis and Prevention. 144: 105597. PMID 32559658 DOI: 10.1016/j.aap.2020.105597  0.074
2017 Naznin F, Currie G, Logan D. Exploring road design factors influencing tram road safety - Melbourne tram driver focus groups. Accident; Analysis and Prevention. 110: 52-61. PMID 29101789 DOI: 10.1016/j.aap.2017.10.017  0.067
2002 Flanagan S, Logan D, Joseph MG. Optional sump: novel use of triple lumen closed drainage system. Anz Journal of Surgery. 72: 806-7. PMID 12437692 DOI: 10.1046/j.1445-2197.2002.02555.x  0.062
2016 Naznin F, Currie G, Logan D, Sarvi M. Safety impacts of platform tram stops on pedestrians in mixed traffic operation: A comparison group before-after crash study. Accident; Analysis and Prevention. 86: 1-8. PMID 26476596 DOI: 10.1016/j.aap.2015.10.007  0.062
2019 Koppel S, Jiménez Octavio J, Bohman K, Logan D, Raphael W, Quintana Jimenez L, Lopez-Valdes F. Seating configuration and position preferences in fully automated vehicles. Traffic Injury Prevention. 1-7. PMID 31246512 DOI: 10.1080/15389588.2019.1625336  0.062
2020 Lopez-Valdes FJ, Bohman K, Jimenez-Octavio J, Logan D, Raphael W, Quintana L, Fueyo RSD, Koppel S. Understanding users' characteristics in the selection of vehicle seating configurations and positions in fully automated vehicles. Traffic Injury Prevention. 1-6. PMID 32926638 DOI: 10.1080/15389588.2020.1810245  0.059
2019 Yang Q, Logan D, Giszter SF. Motor primitives are determined in early development and are then robustly conserved into adulthood. Proceedings of the National Academy of Sciences of the United States of America. PMID 31138689 DOI: 10.1073/Pnas.1821455116  0.053
2014 Goh KC, Currie G, Sarvi M, Logan D. Bus accident analysis of routes with/without bus priority. Accident; Analysis and Prevention. 65: 18-27. PMID 24406378 DOI: 10.1016/j.aap.2013.12.002  0.048
2019 Oxley J, Charlton J, Logan D, O'Hern S, Koppel S, Meuleners L. Safer vehicles and technology for older adults. Traffic Injury Prevention. 1-3. PMID 31674855 DOI: 10.1080/15389588.2019.1661712  0.048
2015 O'Hern S, Oxley J, Logan D. Older Adults at Increased Risk as Pedestrians in Victoria, Australia: An Examination of Crash Characteristics and Injury Outcomes. Traffic Injury Prevention. 16: S161-7. PMID 26436227 DOI: 10.1080/15389588.2015.1061662  0.047
1967 Haber MH, Logan DJ. Bone in the renal capsule. The Journal of Urology. 97: 818-22. PMID 4961001  0.039
2002 Emmett RL, Hinton SA, Logan DJ, McCabe GT. Introduction of a Siberian freshwater shrimp to western North America Biological Invasions. 4: 447-450. DOI: 10.1023/A:1023641915417  0.034
2016 Naznin F, Currie G, Logan D, Sarvi M. Application of a random effects negative binomial model to examine tram-involved crash frequency on route sections in Melbourne, Australia. Accident; Analysis and Prevention. 92: 15-21. PMID 27035395 DOI: 10.1016/j.aap.2016.03.012  0.034
1996 Logan DJ, Bibles EL, Markle DF. Recent collections of exotic aquarium fishes in the freshwaters of Oregon and thermal tolerance of oriental weatherfish and pirapatinga California Fish and Game. 82: 66-80.  0.032
2015 Candappa N, Logan D, Van Nes N, Corben B. An exploration of alternative intersection designs in the context of Safe System. Accident; Analysis and Prevention. 74: 314-23. PMID 25173928 DOI: 10.1016/j.aap.2014.07.030  0.032
1964 LOGAN DJ, KING LR. EFFECT OF PROTEOLYTIC ENZYMES FROM CARICA PAPAYA ON INDUCED EDEMA IN DOG URETERS. Surgical Forum. 15: 481-2. PMID 14193456  0.029
1965 LOGAN DJ, KING LR. PROTEOLYTIC ENZYMES IN URETERAL EDEMA: A LABORATORY STUDY. Investigative Urology. 3: 17-9. PMID 14341375  0.028
2014 Morris OJ, Knight V, Logan D. Intra-operative ultrasound versus wire-guided localization in the surgical management of non-palpable breast cancer. Breast Disease. 34: 157-63. PMID 24898200 DOI: 10.3233/BD-140369  0.024
1967 Logan DJ, King LR. Ureteral obstruction: a clinical and laboratory evaluation of the proteolytic enzymes. The Journal of Urology. 97: 833-6. PMID 6025927  0.023
2004 Fitzharris M, Fildes B, Newstead S, Logan D. Benefits of Australian Design Rule 69 (full frontal crash protection) and airbags in frontal crashes in Australia. Annual Proceedings / Association For the Advancement of Automotive Medicine. Association For the Advancement of Automotive Medicine. 48: 35-53. PMID 15319116  0.022
2010 Palmer S, Logan D, Nabili S, Dutton GN. Effective rehabilitation of reading by training in the technique of eccentric viewing: evaluation of a 4-year programme of service delivery. The British Journal of Ophthalmology. 94: 494-7. PMID 19822918 DOI: 10.1136/bjo.2008.152231  0.021
2011 Sobhani A, Young W, Logan D, Bahrololoom S. A kinetic energy model of two-vehicle crash injury severity. Accident; Analysis and Prevention. 43: 741-54. PMID 21376862 DOI: 10.1016/j.aap.2010.10.021  0.019
1965 Logan DJ, King LR, Barber KE. Urinary diversion and ureteral reimplantation. The Journal of Urology. 94: 665-8. PMID 5843733  0.018
2015 Naznin F, Currie G, Sarvi M, Logan D. An Empirical Bayes Safety Evaluation of Tram/Streetcar Signal and Lane Priority Measures in Melbourne. Traffic Injury Prevention. 0. PMID 25837409 DOI: 10.1080/15389588.2015.1035369  0.013
2014 Goh K, Currie G, Sarvi M, Logan D. Factors affecting the probability of bus drivers being at-fault in bus-involved accidents. Accident; Analysis and Prevention. 66: 20-6. PMID 24486771 DOI: 10.1016/j.aap.2013.12.022  0.01
1967 Reisman DD, Logan DJ. Rupture of the spleen secondary to renal sepsis. The Journal of Urology. 98: 426-30. PMID 6057864  0.01
1966 Logan DJ, O'Conor VJ. Coral kidney: a case report. The Journal of Urology. 96: 867-8. PMID 5956766  0.01
1966 O'Conor VJ, Logan DJ. Nephroureterectomy. Surgery, Gynecology & Obstetrics. 122: 601-3. PMID 5325411  0.01
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