Thomas B. Bair, Ph.D. - Publications

Affiliations: 
2001 University of Iowa, Iowa City, IA 
Area:
Microbiology Biology, Molecular Biology

10/47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Sousa R, Andrade VM, Bair T, Ettinger NA, Guimarães L, Andrade L, Guimarães LH, Machado PRL, Carvalho EM, Wilson ME, Schriefer A. Early Suppression of Macrophage Gene Expression by . Frontiers in Microbiology. 9: 2464. PMID 30374342 DOI: 10.3389/Fmicb.2018.02464  0.316
2015 Thiel WH, Thiel KW, Flenker KS, Bair T, Dupuy AJ, McNamara JO, Miller FJ, Giangrande PH. Cell-internalization SELEX: method for identifying cell-internalizing RNA aptamers for delivering siRNAs to target cells. Methods in Molecular Biology (Clifton, N.J.). 1218: 187-99. PMID 25319652 DOI: 10.1007/978-1-4939-1538-5_11  0.301
2014 Paul S, Bair TB, Moye-Rowley WS. Identification of genomic binding sites for Candida glabrata Pdr1 transcription factor in wild-type and ρ0 cells. Antimicrobial Agents and Chemotherapy. 58: 6904-12. PMID 25199772 DOI: 10.1128/Aac.03921-14  0.34
2013 Tompkins VS, Han SS, Olivier A, Syrbu S, Bair T, Button A, Jacobus L, Wang Z, Lifton S, Raychaudhuri P, Morse HC, Weiner G, Link B, Smith BJ, Janz S. Identification of candidate B-lymphoma genes by cross-species gene expression profiling. Plos One. 8: e76889. PMID 24130802 DOI: 10.1371/Journal.Pone.0076889  0.31
2012 LeGrand J, Park ES, Wang H, Gupta S, Owens JD, Nelson PJ, DuBois W, Bair T, Janz S, Mushinski JF. Global gene expression profiling in mouse plasma cell tumor precursor and bystander cells reveals potential intervention targets for plasma cell neoplasia. Blood. 119: 1018-28. PMID 22147894 DOI: 10.1182/Blood-2011-06-363887  0.312
2010 Woodfield GW, Chen Y, Bair TB, Domann FE, Weigel RJ. Identification of primary gene targets of TFAP2C in hormone responsive breast carcinoma cells. Genes, Chromosomes & Cancer. 49: 948-62. PMID 20629094 DOI: 10.1002/Gcc.20807  0.335
2010 Raca G, Jackson C, Warman B, Bair T, Schimmenti LA. Next generation sequencing in research and diagnostics of ocular birth defects. Molecular Genetics and Metabolism. 100: 184-92. PMID 20359920 DOI: 10.1016/J.Ymgme.2010.03.004  0.302
2009 Martin JN, Bair TB, Bode N, Dauer WT, Gonzalez-Alegre P. Transcriptional and proteomic profiling in a cellular model of DYT1 dystonia. Neuroscience. 164: 563-72. PMID 19665049 DOI: 10.1016/J.Neuroscience.2009.07.068  0.307
2001 Choi KP, Bair TB, Bae YM, Daniels L. Use of transposon Tn5367 mutagenesis and a nitroimidazopyran-based selection system to demonstrate a requirement for fbiA and fbiB in coenzyme F(420) biosynthesis by Mycobacterium bovis BCG. Journal of Bacteriology. 183: 7058-66. PMID 11717263 DOI: 10.1128/Jb.183.24.7058-7066.2001  0.514
2001 Bair TB, Isabelle DW, Daniels L. Structures of coenzyme F(420) in Mycobacterium species. Archives of Microbiology. 176: 37-43. PMID 11479701 DOI: 10.1007/S002030100290  0.49
Low-probability matches (unlikely to be authored by this person)
2016 Shao P, Liu Q, Maina PK, Cui J, Bair TB, Li T, Umesalma S, Zhang W, Qi HH. Histone demethylase PHF8 promotes epithelial to mesenchymal transition and breast tumorigenesis. Nucleic Acids Research. PMID 27899639 DOI: 10.1093/Nar/Gkw1093  0.3
2012 Thiel WH, Bair T, Peek AS, Liu X, Dassie J, Stockdale KR, Behlke MA, Miller FJ, Giangrande PH. Rapid identification of cell-specific, internalizing RNA aptamers with bioinformatics analyses of a cell-based aptamer selection. Plos One. 7: e43836. PMID 22962591 DOI: 10.1371/Journal.Pone.0043836  0.294
2013 Lal G, Contreras PG, Kulak M, Woodfield G, Bair T, Domann FE, Weigel RJ. Human Melanoma cells over-express extracellular matrix 1 (ECM1) which is regulated by TFAP2C. Plos One. 8: e73953. PMID 24023917 DOI: 10.1371/Journal.Pone.0073953  0.291
2004 Bonaldo MF, Bair TB, Scheetz TE, Snir E, Akabogu I, Bair JL, Berger B, Crouch K, Davis A, Eyestone ME, Keppel C, Kucaba TA, Lebeck M, Lin JL, de Melo AI, et al. 1274 full-open reading frames of transcripts expressed in the developing mouse nervous system. Genome Research. 14: 2053-63. PMID 15489326 DOI: 10.1101/Gr.2601304  0.289
2009 Falsetta ML, Bair TB, Ku SC, Vanden Hoven RN, Steichen CT, McEwan AG, Jennings MP, Apicella MA. Transcriptional profiling identifies the metabolic phenotype of gonococcal biofilms. Infection and Immunity. 77: 3522-32. PMID 19528210 DOI: 10.1128/Iai.00036-09  0.287
2009 Drake JM, Strohbehn G, Bair TB, Moreland JG, Henry MD. ZEB1 enhances transendothelial migration and represses the epithelial phenotype of prostate cancer cells. Molecular Biology of the Cell. 20: 2207-17. PMID 19225155 DOI: 10.1091/Mbc.E08-10-1076  0.28
2012 Philibert RA, Sears RA, Powers LS, Nash E, Bair T, Gerke AK, Hassan I, Thomas CP, Gross TJ, Monick MM. Coordinated DNA methylation and gene expression changes in smoker alveolar macrophages: specific effects on VEGF receptor 1 expression. Journal of Leukocyte Biology. 92: 621-31. PMID 22427682 DOI: 10.1189/Jlb.1211632  0.279
2011 Thiel WH, Bair T, Wyatt Thiel K, Dassie JP, Rockey WM, Howell CA, Liu XY, Dupuy AJ, Huang L, Owczarzy R, Behlke MA, McNamara JO, Giangrande PH. Nucleotide bias observed with a short SELEX RNA aptamer library. Nucleic Acid Therapeutics. 21: 253-63. PMID 21793789 DOI: 10.1089/Nat.2011.0288  0.274
2013 Poole J, Foster E, Chaloner K, Hunt J, Jennings MP, Bair T, Knudtson K, Christensen E, Munson RS, Winokur PL, Apicella MA. Analysis of nontypeable haemophilus influenzae phase-variable genes during experimental human nasopharyngeal colonization. The Journal of Infectious Diseases. 208: 720-7. PMID 23715658 DOI: 10.1093/Infdis/Jit240  0.272
2016 Schulmeyer KH, Diaz MR, Bair TB, Sanders W, Gode CJ, Laederach A, Wolfgang MC, Yahr TL. Primary and secondary sequence structure requirements for recognition and discrimination of target RNAs by Pseudomonas aeruginosa RsmA and RsmF. Journal of Bacteriology. PMID 27381913 DOI: 10.1128/Jb.00343-16  0.27
2015 Bair T, Miller RJ, Schappet J, Giangrande PH, Thiel WH. 67. AptmR: A High Throughput Rational Aptamer Truncation Algorithm Molecular Therapy. 23: S29. DOI: 10.1016/S1525-0016(16)33672-3  0.27
2014 Brownstein CA, Beggs AH, Homer N, Merriman B, Yu TW, Flannery KC, DeChene ET, Towne MC, Savage SK, Price EN, Holm IA, Luquette LJ, Lyon E, Majzoub J, Neupert P, ... ... Bair T, et al. An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. Genome Biology. 15: R53. PMID 24667040 DOI: 10.1186/Gb-2014-15-3-R53  0.27
2016 Post DM, Ketterer MR, Coffin JE, Reinders LM, Munson RS, Bair T, Murphy TF, Foster ED, Gibson BW, Apicella MA. Comparative analyses of the lipooligosaccharides from nontypeable Haemophilus influenzae and Haemophilus haemolyticus show differences in sialic acid and phosphorylcholine modifications. Infection and Immunity. PMID 26729761 DOI: 10.1128/Iai.01185-15  0.267
2012 Huang YZ, Hernandez FJ, Gu B, Stockdale KR, Nanapaneni K, Scheetz TE, Behlke MA, Peek AS, Bair T, Giangrande PH, McNamara JO. RNA aptamer-based functional ligands of the neurotrophin receptor, TrkB. Molecular Pharmacology. 82: 623-35. PMID 22752556 DOI: 10.1124/Mol.112.078220  0.266
2017 Li K, Wohlford-Lenane CL, Channappanavar R, Park JE, Earnest JT, Bair TB, Bates AM, Brogden KA, Flaherty HA, Gallagher T, Meyerholz DK, Perlman S, McCray PB. Mouse-adapted MERS coronavirus causes lethal lung disease in human DPP4 knockin mice. Proceedings of the National Academy of Sciences of the United States of America. PMID 28348219 DOI: 10.1073/Pnas.1619109114  0.263
2012 Phillips NJ, Steichen CT, Schilling B, Post DM, Niles RK, Bair TB, Falsetta ML, Apicella MA, Gibson BW. Proteomic analysis of Neisseria gonorrhoeae biofilms shows shift to anaerobic respiration and changes in nutrient transport and outermembrane proteins. Plos One. 7: e38303. PMID 22701624 DOI: 10.1371/Journal.Pone.0038303  0.261
2015 Bogachek MV, Park JM, Andrade JPD, Kulak MV, White JR, Wu T, Spanheimer PM, Woodfield GW, Bair TB, Olivier AK, Weigel RJ. Abstract P6-02-03: SUMO Inhibitors affect tumorigenesis of novel breast cancer xenograft model Cancer Research. 75. DOI: 10.1158/1538-7445.Sabcs14-P6-02-03  0.261
2017 Xu Z, Xing S, Shan Q, Gullicksrud JA, Bair TB, Du Y, Liu C, Xue HH. Cutting Edge: β-Catenin-Interacting Tcf1 Isoforms Are Essential for Thymocyte Survival but Dispensable for Thymic Maturation Transitions. Journal of Immunology (Baltimore, Md. : 1950). PMID 28348272 DOI: 10.4049/Jimmunol.1602139  0.26
2015 Rhein BA, Powers LS, Rogers K, Anantpadma M, Singh BK, Sakurai Y, Bair T, Miller-Hunt C, Sinn P, Davey RA, Monick MM, Maury W. Interferon-γ Inhibits Ebola Virus Infection. Plos Pathogens. 11: e1005263. PMID 26562011 DOI: 10.1371/Journal.Ppat.1005263  0.258
2016 Bair T, Wertz JS, Miller RJ, Schappet J, Giangrande PH, Thiel WH. 148. AptaMetrics: A Web-Based Aptamer Bioinformatics Platform Molecular Therapy. 24: S59. DOI: 10.1016/S1525-0016(16)32957-4  0.252
2016 O'Brien KM, Chimenti MS, Farnell M, Tabler T, Bair T, Bray JL, Nonnenmann MW. High throughput genomic sequencing of bioaerosols in broiler chicken production facilities. Microbial Biotechnology. 9: 782-791. PMID 27470660 DOI: 10.1111/1751-7915.12380  0.247
2013 Spanheimer PM, Woodfield GW, Cyr AR, Kulak MV, White-Baer LS, Bair TB, Weigel RJ. Expression of the RET proto-oncogene is regulated by TFAP2C in breast cancer independent of the estrogen receptor. Annals of Surgical Oncology. 20: 2204-12. PMID 22878616 DOI: 10.1245/S10434-012-2570-5  0.246
2011 Walters JD, Bair TB, Braun TA, Scheetz TE, Robinson JP, Casavant TL. Validation of computational prediction of horizontal gene transfer events-XenoCluster Journal of Supercomputing. 57: 141-150. DOI: 10.1007/S11227-010-0386-2  0.232
2014 Gerke AK, Pezzulo AA, Tang F, Cavanaugh JE, Bair TB, Phillips E, Powers LS, Monick MM. Effects of vitamin D supplementation on alveolar macrophage gene expression: preliminary results of a randomized, controlled trial. Multidisciplinary Respiratory Medicine. 9: 18. PMID 24669961 DOI: 10.1186/2049-6958-9-18  0.23
2010 Wirth TC, Xue HH, Rai D, Sabel JT, Bair T, Harty JT, Badovinac VP. Repetitive antigen stimulation induces stepwise transcriptome diversification but preserves a core signature of memory CD8(+) T cell differentiation. Immunity. 33: 128-40. PMID 20619696 DOI: 10.1016/J.Immuni.2010.06.014  0.229
2015 Bogachek MV, Park JM, De Andrade JP, Kulak MV, White JR, Wu T, Spanheimer PM, Bair TB, Olivier AK, Weigel RJ. A novel animal model for locally advanced breast cancer. Annals of Surgical Oncology. 22: 866-73. PMID 25326397 DOI: 10.1245/S10434-014-4174-8  0.227
2018 Reznikov LR, Meyerholz DK, Abou Alaiwa MH, Kuan SP, Liao YJ, Bormann NL, Bair TB, Price M, Stoltz DA, Welsh MJ. The vagal ganglia transcriptome identifies candidate therapeutics for airway hyperreactivity. American Journal of Physiology. Lung Cellular and Molecular Physiology. PMID 29631359 DOI: 10.1152/Ajplung.00557.2017  0.227
2011 Fabbro S, Kahr WH, Hinckley J, Wang K, Moseley J, Ryu GY, Nixon B, White JG, Bair T, Schutte B, Di Paola J. Homozygosity mapping with SNP arrays confirms 3p21 as a recessive locus for gray platelet syndrome and narrows the interval significantly. Blood. 117: 3430-4. PMID 21263149 DOI: 10.1182/Blood-2010-12-322990  0.2
2015 Dupnik KM, Bair TB, Maia AO, Amorim FM, Costa MR, Keesen TS, Valverde JG, Queiroz Mdo C, Medeiros LL, de Lucena NL, Wilson ME, Nobre ML, Johnson WD, Jeronimo SM. Transcriptional changes that characterize the immune reactions of leprosy. The Journal of Infectious Diseases. 211: 1658-76. PMID 25398459 DOI: 10.1093/Infdis/Jiu612  0.191
2006 Kalari KR, Casavant M, Bair TB, Keen HL, Comeron JM, Casavant TL, Scheetz TE. First exons and introns--a survey of GC content and gene structure in the human genome. In Silico Biology. 6: 237-42. PMID 16922687  0.183
2015 Prasad AM, Morgan DA, Nuno DW, Ketsawatsomkron P, Bair TB, Venema AN, Dibbern ME, Kutschke WJ, Weiss RM, Lamping KG, Chapleau MW, Sigmund CD, Rahmouni K, Grumbach IM. Calcium/Calmodulin-Dependent Kinase II Inhibition in Smooth Muscle Reduces Angiotensin II-Induced Hypertension by Controlling Aortic Remodeling and Baroreceptor Function. Journal of the American Heart Association. 4. PMID 26077587 DOI: 10.1161/Jaha.115.001949  0.177
2012 Guseva NV, Rokhlin OW, Bair TB, Glover RB, Cohen MB. Inhibition of p53 expression modifies the specificity of chromatin binding by the androgen receptor. Oncotarget. 3: 183-94. PMID 22383394 DOI: 10.18632/oncotarget.449  0.156
2009 Walters JD, Bair TB, Braun TA, Scheetz TE, Robinson JP, Casavant TL. Multi-granularity Parallel Computing in a Genome-Scale Molecular Evolution Application. The Journal of Supercomputing. 5698: 49-59. PMID 21841894 DOI: 10.1007/978-3-642-03275-2_6  0.122
1994 Singer S, Bair TB, Hammill TB, Berte AM, Correa-Ochoa MM, Stambaugh AD. Fermentation and toxin studies of the molluscicidal strains of Bacillus brevis Journal of Industrial Microbiology. 13: 112-119. PMID 7764671 DOI: 10.1007/BF01584108  0.098
2013 Stephan J, Neff T, Bair T, Park S, Bender D, Ahmed A, De Geest K, Dupuy A, Goodheart M. Endometrioid ovarian carcinoma has a distinct gene expression profile separate and unique from serous ovarian carcinoma Gynecologic Oncology. 130: e133. DOI: 10.1016/J.Ygyno.2013.04.380  0.097
1986 Tucker DM, Roth DL, Bair TB. Functional connections among cortical regions: topography of EEG coherence. Electroencephalography and Clinical Neurophysiology. 63: 242-50. PMID 2419082 DOI: 10.1016/0013-4694(86)90092-1  0.034
2005 Walters JD, Casavant TL, Robinson JP, Bair TB, Braun TA, Scheetz TE. Xenocluster: A grid computing approach to finding ancient evolutionary genetic anomalies Lecture Notes in Computer Science. 3606: 355-366.  0.033
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