Lin Chao, Ph.D. - Publications

Affiliations: 
EEB University of California, San Diego, La Jolla, CA 

51 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Proenca AM, Rang CU, Qiu A, Shi C, Chao L. Cell aging preserves cellular immortality in the presence of lethal levels of damage. Plos Biology. 17: e3000266. PMID 31120870 DOI: 10.1371/Journal.Pbio.3000266  0.304
2018 Proenca AM, Rang CU, Buetz C, Shi C, Chao L. Age structure landscapes emerge from the equilibrium between aging and rejuvenation in bacterial populations. Nature Communications. 9: 3722. PMID 30213942 DOI: 10.1038/S41467-018-06154-9  0.318
2016 Chao L, Rang CU, Proenca AM, Chao JU. Asymmetrical Damage Partitioning in Bacteria: A Model for the Evolution of Stochasticity, Determinism, and Genetic Assimilation. Plos Computational Biology. 12: e1004700. PMID 26761487 DOI: 10.1371/Journal.Pcbi.1004700  0.4
2014 Campbell EM, Chao L. A population model evaluating the consequences of the evolution of double-resistance and tradeoffs on the benefits of two-drug antibiotic treatments. Plos One. 9: e86971. PMID 24498003 DOI: 10.1371/Journal.Pone.0086971  0.309
2013 Díaz-Muñoz SL, Tenaillon O, Goldhill D, Brao K, Turner PE, Chao L. Electrophoretic mobility confirms reassortment bias among geographic isolates of segmented RNA phages. Bmc Evolutionary Biology. 13: 206. PMID 24059872 DOI: 10.1186/1471-2148-13-206  0.608
2012 Rang CU, Peng AY, Poon AF, Chao L. Ageing in Escherichia coli requires damage by an extrinsic agent. Microbiology (Reading, England). 158: 1553-9. PMID 22422756 DOI: 10.1099/Mic.0.057240-0  0.617
2011 Le Nagard H, Chao L, Tenaillon O. The emergence of complexity and restricted pleiotropy in adapting networks. Bmc Evolutionary Biology. 11: 326. PMID 22059952 DOI: 10.1186/1471-2148-11-326  0.316
2010 Chao L. A model for damage load and its implications for the evolution of bacterial aging. Plos Genetics. 6. PMID 20865171 DOI: 10.1371/Journal.Pgen.1001076  0.399
2010 O'Keefe KJ, Silander OK, McCreery H, Weinreich DM, Wright KM, Chao L, Edwards SV, Remold SK, Turner PE. Geographic differences in sexual reassortment in RNA phage. Evolution; International Journal of Organic Evolution. 64: 3010-23. PMID 20500219 DOI: 10.1111/J.1558-5646.2010.01040.X  0.732
2009 Joseph SB, Hanley KA, Chao L, Burch CL. Coinfection rates in Φ6 bacteriophage are enhanced by virus-induced changes in host cells. Evolutionary Applications. 2: 24-31. PMID 25567844 DOI: 10.1111/J.1752-4571.2008.00055.X  0.618
2007 Silander OK, Tenaillon O, Chao L. Understanding the evolutionary fate of finite populations: the dynamics of mutational effects. Plos Biology. 5: e94. PMID 17407380 DOI: 10.1371/Journal.Pbio.0050094  0.735
2007 Ackermann M, Chao L, Bergstrom CT, Doebeli M. On the evolutionary origin of aging. Aging Cell. 6: 235-44. PMID 17376147 DOI: 10.1111/J.1474-9726.2007.00281.X  0.685
2007 Tenaillon O, Silander OK, Uzan JP, Chao L. Quantifying organismal complexity using a population genetic approach. Plos One. 2: e217. PMID 17299597 DOI: 10.1371/Journal.Pone.0000217  0.703
2006 Poon AF, Chao L. Functional origins of fitness effect-sizes of compensatory mutations in the DNA bacteriophage phiX174. Evolution; International Journal of Organic Evolution. 60: 2032-43. PMID 17133860 DOI: 10.1111/J.0014-3820.2006.Tb01841.X  0.682
2006 Ackermann M, Chao L. DNA sequences shaped by selection for stability. Plos Genetics. 2: e22. PMID 16518467 DOI: 10.1371/journal.pgen.0020022  0.558
2006 Ackermann M, Chao L. DNA sequences shaped by selection for stability Plos Genetics. 2: 224-230. DOI: 10.1371/Journal.Pgen.0020022  0.303
2005 Silander OK, Weinreich DM, Wright KM, O'Keefe KJ, Rang CU, Turner PE, Chao L. Widespread genetic exchange among terrestrial bacteriophages. Proceedings of the National Academy of Sciences of the United States of America. 102: 19009-14. PMID 16365305 DOI: 10.1073/Pnas.0503074102  0.764
2005 Weinreich DM, Chao L. Rapid evolutionary escape by large populations from local fitness peaks is likely in nature. Evolution; International Journal of Organic Evolution. 59: 1175-82. PMID 16050095 DOI: 10.1111/J.0014-3820.2005.Tb01769.X  0.711
2005 Weinreich DM, Watson RA, Chao L. Perspective: Sign epistasis and genetic constraint on evolutionary trajectories. Evolution; International Journal of Organic Evolution. 59: 1165-74. PMID 16050094 DOI: 10.1554/04-272  0.705
2005 Poon A, Chao L. The rate of compensatory mutation in the DNA bacteriophage phiX174. Genetics. 170: 989-99. PMID 15911582 DOI: 10.1534/Genetics.104.039438  0.685
2005 Poon A, Davis BH, Chao L. The coupon collector and the suppressor mutation: estimating the number of compensatory mutations by maximum likelihood. Genetics. 170: 1323-32. PMID 15879511 DOI: 10.1534/Genetics.104.037259  0.678
2004 Froissart R, Wilke CO, Montville R, Remold SK, Chao L, Turner PE. Co-infection weakens selection against epistatic mutations in RNA viruses. Genetics. 168: 9-19. PMID 15454523 DOI: 10.1534/Genetics.104.030205  0.777
2004 Burch CL, Chao L. Epistasis and its relationship to canalization in the RNA virus phi 6. Genetics. 167: 559-67. PMID 15238511 DOI: 10.1534/Genetics.103.021196  0.703
2004 Poon A, Chao L. Drift increases the advantage of sex in RNA bacteriophage Phi6. Genetics. 166: 19-24. PMID 15020402 DOI: 10.1534/Genetics.166.1.19  0.734
2004 Ackermann M, Chao L. Evolution of cooperation: Two for One? Current Biology. 14: R73-R74. PMID 14738754 DOI: 10.1016/J.Cub.2003.12.049  0.583
2003 de Visser JA, Hermisson J, Wagner GP, Ancel Meyers L, Bagheri-Chaichian H, Blanchard JL, Chao L, Cheverud JM, Elena SF, Fontana W, Gibson G, Hansen TF, Krakauer D, Lewontin RC, Ofria C, et al. Perspective: Evolution and detection of genetic robustness. Evolution; International Journal of Organic Evolution. 57: 1959-72. PMID 14575319 DOI: 10.1554/02-750R  0.622
2003 Turner PE, Chao L. Escape from Prisoner's Dilemma in RNA phage phi6. The American Naturalist. 161: 497-505. PMID 12699226 DOI: 10.1086/367880  0.59
2002 Chao L, Rang CU, Wong LE. Distribution of spontaneous mutants and inferences about the replication mode of the RNA bacteriophage φ6 Journal of Virology. 76: 3276-3281. PMID 11884552 DOI: 10.1128/Jvi.76.7.3276-3281.2002  0.368
2000 Chao L, Hanley KA, Burch CL, Dahlberg C, Turner PE. Kin selection and parasite evolution: higher and lower virulence with hard and soft selection. The Quarterly Review of Biology. 75: 261-75. PMID 11008699 DOI: 10.1086/393499  0.69
2000 Burch CL, Chao L. Evolvability of an RNA virus is determined by its mutational neighbourhood. Nature. 406: 625-8. PMID 10949302 DOI: 10.1038/35020564  0.722
1999 Turner PE, Chao L. Prisoner's dilemma in an RNA virus. Nature. 398: 441-3. PMID 10201376 DOI: 10.1038/18913  0.554
1999 Burch CL, Chao L. Evolution by small steps and rugged landscapes in the RNA virus phi6. Genetics. 151: 921-7. PMID 10049911  0.693
1999 Turner PE, Burch CL, Hanley KA, Chao L. Hybrid frequencies confirm limit to coinfection in the RNA bacteriophage phi6. Journal of Virology. 73: 2420-4. PMID 9971826 DOI: 10.1128/Jvi.73.3.2420-2424.1999  0.708
1998 Turner PE, Chao L. Sex and the evolution of intrahost competition in RNA virus phi6. Genetics. 150: 523-32. PMID 9755186  0.556
1997 Fenster CB, Galloway LF, Chao L. Epistasis and its consequences for the evolution of natural populations. Trends in Ecology & Evolution. 12: 282-6. PMID 21238076 DOI: 10.1016/S0169-5347(97)81027-0  0.382
1997 Chao L. Evolution of sex and the molecular clock in RNA viruses Gene. 205: 301-308. PMID 9461404 DOI: 10.1016/S0378-1119(97)00405-8  0.517
1997 Chao L, Tran TT. The advantage of sex in the RNA virus φ6 Genetics. 147: 953-959. PMID 9383044  0.372
1996 Francino MP, Chao L, Riley MA, Ochman H. Asymmetries generated by transcription-coupled repair in enterobacterial genes. Science (New York, N.Y.). 272: 107-9. PMID 8600517 DOI: 10.1126/Science.272.5258.107  0.351
1995 Gill DE, Chao L, Perkins aSL, Wolf JB. Genetic Mosaicism In Plants And Clonal Animals Annual Review of Ecology, Evolution, and Systematics. 26: 423-444. DOI: 10.1146/Annurev.Es.26.110195.002231  0.443
1993 Chao L, Carr DE. THE MOLECULAR CLOCK AND THE RELATIONSHIP BETWEEN POPULATION SIZE AND GENERATION TIME. Evolution; International Journal of Organic Evolution. 47: 688-690. PMID 28568720 DOI: 10.1111/J.1558-5646.1993.Tb02124.X  0.331
1993 Stephan W, Chao L, Smale JG. The advance of Muller's ratchet in a haploid asexual population: approximate solutions based on diffusion theory. Genetical Research. 61: 225-31. PMID 8365659 DOI: 10.1017/S0016672300031384  0.738
1992 Chao L, Tran T, Matthews C. MULLER'S RATCHET AND THE ADVANTAGE OF SEX IN THE RNA VIRUS ϟ6. Evolution; International Journal of Organic Evolution. 46: 289-299. PMID 28564033 DOI: 10.1111/J.1558-5646.1992.Tb02038.X  0.447
1992 Chao L. Evolution of sex in RNA viruses Trends in Ecology and Evolution. 7: 147-151. DOI: 10.1016/S0022-5193(88)80027-4  0.473
1991 Chao L. Levels of selection, evolution of sex in RNA viruses, and the origin of life Journal of Theoretical Biology. 153: 229-246. PMID 1787738 DOI: 10.1016/S0022-5193(05)80424-2  0.42
1990 Chao L. Fitness of RNA virus decreased by Muller's ratchet Nature. 348: 454-455. PMID 2247152 DOI: 10.1038/348454A0  0.481
1985 Chao L, McBroom SM. Evolution of transposable elements: An IS10 insertion increases fitness in Escherichia coli Molecular Biology and Evolution. 2: 359-369. PMID 2835575 DOI: 10.1093/Oxfordjournals.Molbev.A040356  0.338
1983 Chao L, Cox EC. COMPETITION BETWEEN HIGH AND LOW MUTATING STRAINS OF ESCHERICHIA COLI. Evolution; International Journal of Organic Evolution. 37: 125-134. PMID 28568016 DOI: 10.1111/J.1558-5646.1983.Tb05521.X  0.659
1983 Chao L, Vargas C, Spear BB, Cox EC. Transposable elements as mutator genes in evolution. Nature. 303: 633-5. PMID 6304533 DOI: 10.1038/303633A0  0.64
1981 Chao L, Levin BR. Structured habitats and the evolution of anticompetitor toxins in bacteria. Proceedings of the National Academy of Sciences of the United States of America. 78: 6324-8. PMID 7031647 DOI: 10.1073/Pnas.78.10.6324  0.515
1977 Chao L, Levin BR, Stewart FM. A Complex Community in a Simple Habitat: An Experimental Study with Bacteria and Phage Ecology. 58: 369-378. DOI: 10.2307/1935611  0.535
1977 Levin BR, Stewart FM, Chao L. Resource-Limited Growth, Competition, and Predation: A Model and Experimental Studies with Bacteria and Bacteriophage The American Naturalist. 111: 3-24. DOI: 10.1086/283134  0.545
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