| Year |
Citation |
Score |
| 2020 |
Scheufele K, Subramanian S, Biros G. Fully Automatic Calibration of Tumor-Growth Models Using a Single mpMRI Scan. Ieee Transactions On Medical Imaging. PMID 32931431 DOI: 10.1109/Tmi.2020.3024264 |
0.328 |
|
| 2020 |
Mang A, Bakas S, Subramanian S, Davatzikos C, Biros G. Integrated Biophysical Modeling and Image Analysis: Application to Neuro-Oncology. Annual Review of Biomedical Engineering. 22: 309-341. PMID 32501772 DOI: 10.1146/Annurev-Bioeng-062117-121105 |
0.331 |
|
| 2020 |
Borges C, Biros G. A domain decomposition preconditioning for an inverse volume scattering problem Inverse Problems. 36: 035016. DOI: 10.1088/1361-6420/Ab6E78 |
0.384 |
|
| 2020 |
Subramanian S, Scheufele K, Mehl M, Biros G. Where did the tumor start? An inverse solver with sparse localization for tumor growth models Inverse Problems. 36: 045006. DOI: 10.1088/1361-6420/Ab649C |
0.396 |
|
| 2019 |
Scheufele K, Mang A, Gholami A, Davatzikos C, Biros G, Mehl M. Coupling brain-tumor biophysical models and diffeomorphic image registration. Computer Methods in Applied Mechanics and Engineering. 347: 533-567. PMID 31857736 DOI: 10.1016/J.Cma.2018.12.008 |
0.405 |
|
| 2019 |
Kabacaoğlu G, Biros G. Machine learning acceleration of simulations of Stokesian suspensions. Physical Review. E. 99: 063313. PMID 31330700 DOI: 10.1103/Physreve.99.063313 |
0.356 |
|
| 2019 |
Subramanian S, Gholami A, Biros G. Simulation of glioblastoma growth using a 3D multispecies tumor model with mass effect. Journal of Mathematical Biology. PMID 31127329 DOI: 10.1007/S00285-019-01383-Y |
0.326 |
|
| 2018 |
Kabacaoğlu G, Biros G. Optimal design of deterministic lateral displacement device for viscosity-contrast-based cell sorting Physical Review Fluids. 3. DOI: 10.1103/Physrevfluids.3.124201 |
0.354 |
|
| 2018 |
Borges C, Biros G. Reconstruction of a compactly supported sound profile in the presence of a random background medium Inverse Problems. 34: 115007. DOI: 10.1088/1361-6420/Aadbc5 |
0.328 |
|
| 2018 |
Kabacaoğlu G, Quaife B, Biros G. Low-resolution simulations of vesicle suspensions in 2D Journal of Computational Physics. 357: 43-77. DOI: 10.1016/J.Jcp.2017.12.023 |
0.369 |
|
| 2018 |
Mang A, Gholami A, Davatzikos C, Biros G. PDE-constrained optimization in medical image analysis Optimization and Engineering. 19: 765-812. DOI: 10.1007/S11081-018-9390-9 |
0.375 |
|
| 2017 |
Mang A, Biros G. A SEMI-LAGRANGIAN TWO-LEVEL PRECONDITIONED NEWTON-KRYLOV SOLVER FOR CONSTRAINED DIFFEOMORPHIC IMAGE REGISTRATION. Siam Journal On Scientific Computing : a Publication of the Society For Industrial and Applied Mathematics. 39: B1064-B1101. PMID 29255342 DOI: 10.1137/16M1070475 |
0.418 |
|
| 2017 |
Kabacaoğlu G, Quaife B, Biros G. Quantification of mixing in vesicle suspensions using numerical simulations in two dimensions. Physics of Fluids (Woodbury, N.Y. : 1994). 29: 021901. PMID 28344432 DOI: 10.1063/1.4975154 |
0.342 |
|
| 2017 |
March WB, Biros G. Far-field compression for fast kernel summation methods in high dimensions Applied and Computational Harmonic Analysis. 43: 39-75. DOI: 10.1016/J.Acha.2015.09.007 |
0.341 |
|
| 2016 |
Mang A, Biros G. Constrained H(1)-regularization schemes for diffeomorphic image registration. Siam Journal On Imaging Sciences. 9: 1154-1194. PMID 29075361 DOI: 10.1137/15M1010919 |
0.361 |
|
| 2016 |
Gholami A, Mang A, Biros G. An inverse problem formulation for parameter estimation of a reaction-diffusion model of low grade gliomas. Journal of Mathematical Biology. 72: 409-33. PMID 25963601 DOI: 10.1007/S00285-015-0888-X |
0.416 |
|
| 2016 |
Malhotra D, Biros G. Algorithm 967 Acm Transactions On Mathematical Software. 43: 1-27. DOI: 10.1145/2898349 |
0.383 |
|
| 2016 |
March WB, Xiao B, Yu CD, Biros G. ASKIT: An Efficient, Parallel Library for High-Dimensional Kernel Summations Siam Journal On Scientific Computing. 38: S720-S749. DOI: 10.1137/15M1026468 |
0.342 |
|
| 2016 |
Xiao B, Biros G. Parallel Algorithms for Nearest Neighbor Search Problems in High Dimensions Siam Journal On Scientific Computing. 38: S667-S699. DOI: 10.1137/15M1026377 |
0.346 |
|
| 2016 |
Gholami A, Malhotra D, Sundar H, Biros G. FFT, FMM, or multigrid? A comparative study of state-of-the-art Poisson solvers for uniform and nonuniform grids in the unit cube Siam Journal On Scientific Computing. 38: C280-C306. DOI: 10.1137/15M1010798 |
0.44 |
|
| 2016 |
Quaife B, Biros G. Adaptive time stepping for vesicle suspensions Journal of Computational Physics. 306: 478-499. DOI: 10.1016/J.Jcp.2015.11.050 |
0.326 |
|
| 2015 |
Mang A, Biros G. An Inexact Newton-Krylov Algorithm for Constrained Diffeomorphic Image Registration. Siam Journal On Imaging Sciences. 8: 1030-1069. PMID 27617052 DOI: 10.1137/140984002 |
0.462 |
|
| 2015 |
Malhotra D, Biros G. PVFMM: A Parallel Kernel Independent FMM for Particle and Volume Potentials Communications in Computational Physics. 18: 808-830. DOI: 10.4208/Cicp.020215.150515Sw |
0.376 |
|
| 2015 |
March WB, Xiao B, Biros G. Askit: Approximate skeletonization kernel-independent treecode in high dimensions Siam Journal On Scientific Computing. 37: A1089-A1110. DOI: 10.1137/140989546 |
0.38 |
|
| 2015 |
Mang A, Biros G. An inexact Newton–Krylov algorithm for constrained diffeomorphic image registration Siam Journal On Imaging Sciences. 8: 1030-1069. DOI: 10.1137/140984002 |
0.363 |
|
| 2015 |
Quaife B, Biros G. High-order adaptive time stepping for vesicle suspensions with viscosity contrast Procedia Iutam. 16: 89-98. DOI: 10.1016/J.Piutam.2015.03.011 |
0.31 |
|
| 2015 |
Rahimian A, Veerapaneni SK, Zorin D, Biros G. Boundary integral method for the flow of vesicles with viscosity contrast in three dimensions Journal of Computational Physics. 298: 766-786. DOI: 10.1016/J.Jcp.2015.06.017 |
0.385 |
|
| 2015 |
Sundar H, Stadler G, Biros G. Comparison of multigrid algorithms for high-order continuous finite element discretizations Numerical Linear Algebra With Applications. 22: 664-680. DOI: 10.1002/Nla.1979 |
0.364 |
|
| 2015 |
Quaife B, Biros G. On preconditioners for the Laplace double-layer in 2D Numerical Linear Algebra With Applications. 22: 101-122. DOI: 10.1002/Nla.1940 |
0.392 |
|
| 2014 |
Malhotra D, Gholami A, Biros G. A Volume Integral Equation Stokes Solver for Problems with Variable Coefficients International Conference For High Performance Computing, Networking, Storage and Analysis, Sc. 2015: 92-102. DOI: 10.1109/SC.2014.13 |
0.304 |
|
| 2014 |
Quaife B, Biros G. High-volume fraction simulations of two-dimensional vesicle suspensions Journal of Computational Physics. 274: 245-267. DOI: 10.1016/J.Jcp.2014.06.013 |
0.37 |
|
| 2012 |
Gooya A, Pohl KM, Bilello M, Cirillo L, Biros G, Melhem ER, Davatzikos C. GLISTR: glioma image segmentation and registration. Ieee Transactions On Medical Imaging. 31: 1941-54. PMID 22907965 DOI: 10.1109/Tmi.2012.2210558 |
0.307 |
|
| 2012 |
Sundar H, Biros G, Burstedde C, Rudi J, Ghattas O, Stadler G. Parallel geometric-algebraic multigrid on unstructured forests of octrees International Conference For High Performance Computing, Networking, Storage and Analysis, Sc. DOI: 10.1109/SC.2012.91 |
0.501 |
|
| 2012 |
Allaire D, Biros G, Chambers J, Ghattas O, Kordonowy D, Willcox K. Dynamic data driven methods for self-aware aerospace vehicles Procedia Computer Science. 9: 1206-1210. DOI: 10.1016/j.procs.2012.04.130 |
0.536 |
|
| 2012 |
Chaillat S, Biros G. FaIMS: A fast algorithm for the inverse medium problem with multiple frequencies and multiple sources for the scalar Helmholtz equation Journal of Computational Physics. 231: 4403-4421. DOI: 10.1016/J.Jcp.2012.02.006 |
0.38 |
|
| 2011 |
Gooya A, Biros G, Davatzikos C. Deformable registration of glioma images using EM algorithm and diffusion reaction modeling. Ieee Transactions On Medical Imaging. 30: 375-90. PMID 20876010 DOI: 10.1109/Tmi.2010.2078833 |
0.386 |
|
| 2011 |
Veerapaneni SK, Rahimian A, Biros G, Zorin D. A fast algorithm for simulating vesicle flows in three dimensions Journal of Computational Physics. 230: 5610-5634. DOI: 10.1016/J.Jcp.2011.03.045 |
0.376 |
|
| 2010 |
Sampath RS, Biros G. A parallel geometric multigrid method for finite elements on octree meshes Siam Journal On Scientific Computing. 32: 1361-1392. DOI: 10.1137/090747774 |
0.341 |
|
| 2010 |
Adavani SS, Biros G. Fast algorithms for source identification problems with elliptic pde constraints Siam Journal On Imaging Sciences. 3: 791-808. DOI: 10.1137/080738064 |
0.427 |
|
| 2010 |
Rahimian A, Veerapaneni SK, Biros G. Dynamic simulation of locally inextensible vesicles suspended in an arbitrary two-dimensional domain, a boundary integral method Journal of Computational Physics. 229: 6466-6484. DOI: 10.1016/J.Jcp.2010.05.006 |
0.411 |
|
| 2010 |
Biegler L, Biros G, Ghattas O, Heinkenschloss M, Keyes D, Mallick B, Marzouk Y, Tenorio L, van Bloemen Waanders B, Willcox K. Large-Scale Inverse Problems and Quantification of Uncertainty Large-Scale Inverse Problems and Quantification of Uncertainty. DOI: 10.1002/9780470685853 |
0.564 |
|
| 2009 |
Zacharaki EI, Hogea CS, Shen D, Biros G, Davatzikos C. Non-diffeomorphic registration of brain tumor images by simulating tissue loss and tumor growth. Neuroimage. 46: 762-74. PMID 19408350 DOI: 10.1016/J.Neuroimage.2009.01.051 |
0.31 |
|
| 2009 |
Ghigliotti G, Selmi H, Kaoui B, Biros G, Misbah C. Dynamics and Rheology of highly deflated vesicles Esaim: Proceedings. 28: 211-226. DOI: 10.1051/Proc/2009048 |
0.347 |
|
| 2009 |
Veerapaneni SK, Gueyffier D, Biros G, Zorin D. A numerical method for simulating the dynamics of 3D axisymmetric vesicles suspended in viscous flows Journal of Computational Physics. 228: 7233-7249. DOI: 10.1016/J.Jcp.2009.06.020 |
0.371 |
|
| 2009 |
Veerapaneni SK, Gueyffier D, Zorin D, Biros G. A boundary integral method for simulating the dynamics of inextensible vesicles suspended in a viscous fluid in 2D Journal of Computational Physics. 228: 2334-2353. DOI: 10.1016/J.Jcp.2008.11.036 |
0.382 |
|
| 2009 |
Veerapaneni SK, Raj R, Biros G, Purohit PK. Analytical and numerical solutions for shapes of quiescent two-dimensional vesicles International Journal of Non-Linear Mechanics. 44: 257-262. DOI: 10.1016/J.Ijnonlinmec.2008.10.004 |
0.386 |
|
| 2008 |
Zacharaki EI, Hogea CS, Biros G, Davatzikos C. A comparative study of biomechanical simulators in deformable registration of brain tumor images. Ieee Transactions On Bio-Medical Engineering. 55: 1233-6. PMID 18334420 DOI: 10.1109/Tbme.2007.905484 |
0.336 |
|
| 2008 |
Hogea C, Davatzikos C, Biros G. An image-driven parameter estimation problem for a reaction-diffusion glioma growth model with mass effects. Journal of Mathematical Biology. 56: 793-825. PMID 18026731 DOI: 10.1007/S00285-007-0139-X |
0.399 |
|
| 2008 |
Hogea C, Davatzikos C, Biros G. Brain-tumor interaction biophysical models for medical image registration Siam Journal On Scientific Computing. 30: 3050-3072. DOI: 10.1137/07069208X |
0.369 |
|
| 2008 |
Adavani SS, Biros G. Multigrid algorithms for inverse problems with linear parabolic PDE constraints Siam Journal On Scientific Computing. 31: 369-397. DOI: 10.1137/070687426 |
0.424 |
|
| 2008 |
Biros G, Dogan G. A multilevel algorithm for inverse problems with elliptic PDE constraints Inverse Problems. 24. DOI: 10.1088/0266-5611/24/3/034010 |
0.437 |
|
| 2008 |
Veerapaneni SK, Biros G. The Chebyshev fast Gauss and nonuniform fast Fourier transforms and their application to the evaluation of distributed heat potentials Journal of Computational Physics. 227: 7768-7790. DOI: 10.1016/J.Jcp.2008.05.003 |
0.343 |
|
| 2007 |
Hogea C, Biros G, Abraham F, Davatzikos C. A robust framework for soft tissue simulations with application to modeling brain tumor mass effect in 3D MR images. Physics in Medicine and Biology. 52: 6893-908. PMID 18029982 DOI: 10.1088/0031-9155/52/23/008 |
0.378 |
|
| 2007 |
Sundar H, Sampath RS, Biros G. Bottom-up construction and 2:1 balance refinement of linear octrees in parallel Siam Journal On Scientific Computing. 30: 2675-2708. DOI: 10.1137/070681727 |
0.31 |
|
| 2007 |
Veerapaneni SK, Biros G. A High-order solver for the heat equation in 1D domains with moving boundaries Siam Journal On Scientific Computing. 29: 2581-2606. DOI: 10.1137/060677896 |
0.357 |
|
| 2007 |
Akcelik V, Biros G, Ghattas O. Minisymposium 1: Domain Decomposition Methods for Simulation-constrained Optimization Lecture Notes in Computational Science and Engineering. 55: 153. |
0.733 |
|
| 2006 |
Biros G, Ghattas O. Parallel Lagrange-Newton-Krylov-Schur methods for PDE-constrained optimization. Part II: The Lagrange-Newton solver and its application to optimal control of steady viscous flows Siam Journal On Scientific Computing. 27: 714-739. DOI: 10.1137/S1064827502415661 |
0.658 |
|
| 2006 |
Biros G, Ghattas O. Parallel Lagrange-Newton-Krylov-Schur methods for PDE-constrained optimization. Part I: The Krylov-Schur solver Siam Journal On Scientific Computing. 27: 687-713. DOI: 10.1137/S106482750241565X |
0.66 |
|
| 2006 |
Ying L, Biros G, Zorin D. A high-order 3D boundary integral equation solver for elliptic PDEs in smooth domains Journal of Computational Physics. 219: 247-275. DOI: 10.1016/J.Jcp.2006.03.021 |
0.406 |
|
| 2006 |
Akcelik V, Biros G, Draganescu A, Ghattas O, Hill J, Van Bloemen Waanders B. Inversion of airborne contaminants in a regional model Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3993: 481-488. DOI: 10.1007/11758532_64 |
0.688 |
|
| 2005 |
Akçelik V, Biros G, Ghattas O, Keyes D, Ko K, Lee LQ, Ng EG. Adjoint methods for electromagnetic shape optimization of the low-loss cavity for the international linear collider Journal of Physics: Conference Series. 16: 435-445. DOI: 10.1088/1742-6596/16/1/059 |
0.6 |
|
| 2004 |
Ying L, Biros G, Zorin D. A kernel-independent adaptive fast multipole algorithm in two and three dimensions Journal of Computational Physics. 196: 591-626. DOI: 10.1016/J.Jcp.2003.11.021 |
0.393 |
|
| 2004 |
Biros G, Ying L, Zorin D. A fast solver for the Stokes equations with distributed forces in complex geometries Journal of Computational Physics. 193: 317-348. DOI: 10.1016/J.Jcp.2003.08.011 |
0.416 |
|
| 2004 |
Akçelik V, Bielak J, Biros G, Epanomeritakis I, Ghattas O, Kallivokas LF, Kim EJ. A framework for online inversion-based 3D site characterization Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3038: 717-724. |
0.539 |
|
| 2003 |
Akçelik V, Bielak J, Biros G, Epanomeritakis I, Fernández A, Ghattas O, Kim EJ, López J, O'Hallaron D, Tu T, Urbanic J. High resolution forward and inverse earthquake modeling on terascale computers Proceedings of the 2003 Acm/Ieee Conference On Supercomputing, Sc 2003. DOI: 10.1145/1048935.1050202 |
0.584 |
|
| 2003 |
Akçelik V, Biros G, Ghattas O, Long KR, Van Bloemen Waanders B. A variational finite element method for source inversion for convective-diffusive transport Finite Elements in Analysis and Design. 39: 683-705. DOI: 10.1016/S0168-874X(03)00054-4 |
0.721 |
|
| Show low-probability matches. |