Year |
Citation |
Score |
2021 |
Posada D, Crandall KA. Felsenstein Phylogenetic Likelihood. Journal of Molecular Evolution. PMID 33438113 DOI: 10.1007/s00239-020-09982-w |
0.501 |
|
2020 |
Liberles DA, Chang B, Geiler-Samerotte K, Goldman A, Hey J, Kaçar B, Meyer M, Murphy W, Posada D, Storfer A. Emerging Frontiers in the Study of Molecular Evolution. Journal of Molecular Evolution. PMID 32060574 DOI: 10.1007/S00239-020-09932-6 |
0.326 |
|
2020 |
Posada D. CellCoal: coalescent simulation of single-cell sequencing samples. Molecular Biology and Evolution. PMID 32027371 DOI: 10.1093/Molbev/Msaa025 |
0.346 |
|
2019 |
Darriba D, Posada D, Kozlov AM, Stamatakis A, Morel B, Flouri T. ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models. Molecular Biology and Evolution. PMID 31432070 DOI: 10.1093/Molbev/Msz189 |
0.33 |
|
2018 |
Escalona M, Rocha S, Posada D. Author Correction: A comparison of tools for the simulation of genomic next-generation sequencing data. Nature Reviews. Genetics. PMID 30283054 DOI: 10.1038/S41576-018-0058-2 |
0.324 |
|
2018 |
Duchemin W, Gence G, Arigon Chifolleau AM, Arvestad L, Bansal MS, Berry V, Boussau B, Chevenet F, Comte N, Davín AA, Dessimoz C, Dylus D, Hasic D, Mallo D, Planel R, ... Posada D, et al. RecPhyloXML - a format for reconciled gene trees. Bioinformatics (Oxford, England). PMID 29762653 DOI: 10.1093/Bioinformatics/Bty389 |
0.319 |
|
2018 |
Escalona M, Rocha S, Posada D. NGSphy: phylogenomic simulation of next-generation sequencing data. Bioinformatics (Oxford, England). PMID 29534152 DOI: 10.1093/Bioinformatics/Bty146 |
0.363 |
|
2017 |
de Oliveira Martins L, Posada D. Species Tree Estimation from Genome-Wide Data with guenomu. Methods in Molecular Biology (Clifton, N.J.). 1525: 461-478. PMID 27896732 DOI: 10.1007/978-1-4939-6622-6_18 |
0.355 |
|
2016 |
Mallo D, Posada D. Multilocus inference of species trees and DNA barcoding. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371. PMID 27481787 DOI: 10.1098/Rstb.2015.0335 |
0.384 |
|
2016 |
Escalona M, Rocha S, Posada D. A comparison of tools for the simulation of genomic next-generation sequencing data. Nature Reviews. Genetics. PMID 27320129 DOI: 10.1038/Nrg.2016.57 |
0.343 |
|
2016 |
de Oliveira Martins L, Posada D. Infinitely long branches and an informal test of common ancestry. Biology Direct. 11: 19. PMID 27055810 DOI: 10.1186/S13062-016-0120-Y |
0.345 |
|
2016 |
Murgarella M, Puiu D, Novoa B, Figueras A, Posada D, Canchaya C. A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis. Plos One. 11: e0151561. PMID 26977809 DOI: 10.1371/Journal.Pone.0151561 |
0.331 |
|
2016 |
Rocha S, Perera A, Silva A, Posada D, Harris DJ. Evolutionary history ofTrachylepisskinks in the Seychelles islands: introgressive hybridization, morphological evolution and geographic structure Biological Journal of the Linnean Society. 119: 15-36. DOI: 10.1111/Bij.12803 |
0.37 |
|
2015 |
Mallo D, de Oliveira Martins L, Posada D. SimPhy: Phylogenomic Simulation of Gene, Locus and Species Trees. Systematic Biology. PMID 26526427 DOI: 10.1093/Sysbio/Syv082 |
0.404 |
|
2015 |
Posada D. Cancer Molecular Evolution. Journal of Molecular Evolution. 81: 81-3. PMID 26289731 DOI: 10.1007/S00239-015-9695-7 |
0.318 |
|
2015 |
Arenas M, Lopes JS, Beaumont MA, Posada D. CodABC: a computational framework to coestimate recombination, substitution, and molecular adaptation rates by approximate Bayesian computation. Molecular Biology and Evolution. 32: 1109-12. PMID 25577191 DOI: 10.1093/Molbev/Msu411 |
0.666 |
|
2015 |
Buhay JE, Crandall KA, Posada D. Nested clade phylogeographic analysis for conservation genetics Population Genetics For Animal Conservation. 80-103. DOI: 10.1017/CBO9780511626920.005 |
0.762 |
|
2014 |
De Oliveira Martins L, Mallo D, Posada D. A Bayesian Supertree Model for Genome-Wide Species Tree Reconstruction. Systematic Biology. PMID 25281847 DOI: 10.1093/Sysbio/Syu082 |
0.361 |
|
2014 |
Faria NR, Rambaut A, Suchard MA, Baele G, Bedford T, Ward MJ, Tatem AJ, Sousa JD, Arinaminpathy N, Pépin J, Posada D, Peeters M, Pybus OG, Lemey P. HIV epidemiology. The early spread and epidemic ignition of HIV-1 in human populations. Science (New York, N.Y.). 346: 56-61. PMID 25278604 DOI: 10.1126/Science.1256739 |
0.325 |
|
2014 |
Fonseca MM, Harris DJ, Posada D. The inversion of the Control Region in three mitogenomes provides further evidence for an asymmetric model of vertebrate mtDNA replication. Plos One. 9: e106654. PMID 25268704 DOI: 10.1371/Journal.Pone.0106654 |
0.322 |
|
2014 |
Mallo D, De Oliveira Martins L, Posada D. Unsorted homology within locus and species trees. Systematic Biology. 63: 988-92. PMID 25077514 DOI: 10.1093/Sysbio/Syu050 |
0.384 |
|
2014 |
Arenas M, Posada D. Simulation of genome-wide evolution under heterogeneous substitution models and complex multispecies coalescent histories. Molecular Biology and Evolution. 31: 1295-301. PMID 24557445 DOI: 10.1093/Molbev/Msu078 |
0.675 |
|
2014 |
Santorum JM, Darriba D, Taboada GL, Posada D. jmodeltest.org: selection of nucleotide substitution models on the cloud. Bioinformatics (Oxford, England). 30: 1310-1. PMID 24451621 DOI: 10.1093/Bioinformatics/Btu032 |
0.308 |
|
2014 |
Fonseca MM, Harris DJ, Posada D. Origin and length distribution of unidirectional prokaryotic overlapping genes. G3 (Bethesda, Md.). 4: 19-27. PMID 24192837 DOI: 10.1534/G3.113.005652 |
0.326 |
|
2014 |
Lopes JS, Arenas M, Posada D, Beaumont MA. Coestimation of recombination, substitution and molecular adaptation rates by approximate Bayesian computation. Heredity. 112: 255-64. PMID 24149652 DOI: 10.1038/Hdy.2013.101 |
0.389 |
|
2014 |
Mallo D, Martins LdO, Posada D. SimPhy: comprehensive simulation of gene, locus and species trees at the genome-wide level F1000research. 5. DOI: 10.7490/F1000Research.1096480.1 |
0.334 |
|
2013 |
Arenas M, Dos Santos HG, Posada D, Bastolla U. Protein evolution along phylogenetic histories under structurally constrained substitution models. Bioinformatics (Oxford, England). 29: 3020-8. PMID 24037213 DOI: 10.1093/Bioinformatics/Btt530 |
0.75 |
|
2013 |
Posada D. Phylogenetic models of molecular evolution: next-generation data, fit, and performance. Journal of Molecular Evolution. 76: 351-2. PMID 23695649 DOI: 10.1007/S00239-013-9566-Z |
0.387 |
|
2013 |
Rocha S, Posada D, Harris DJ. Phylogeography and diversification history of the day-gecko genus Phelsuma in the Seychelles islands. Bmc Evolutionary Biology. 13: 3. PMID 23289814 DOI: 10.1186/1471-2148-13-3 |
0.363 |
|
2012 |
Martins LD, Posada D. Proving universal common ancestry with similar sequences. Trends in Evolutionary Biology. 4. PMID 23814665 DOI: 10.4081/Eb.2012.E5 |
0.315 |
|
2012 |
Andonov A, Coulthart MB, Pérez-Losada M, Crandall KA, Posada D, Padmore R, Giulivi A, Oger JJ, Peters AA, Dekaban GA. Insights into origins of Human T-cell Lymphotropic Virus Type 1 based on new strains from aboriginal people of Canada. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 12: 1822-30. PMID 22921499 DOI: 10.1016/J.Meegid.2012.07.015 |
0.527 |
|
2012 |
Fonseca MM, Rocha S, Posada D. Base-pairing versatility determines wobble sites in tRNA anticodons of vertebrate mitogenomes. Plos One. 7: e36605. PMID 22590575 DOI: 10.1371/Journal.Pone.0036605 |
0.303 |
|
2012 |
Abascal F, Posada D, Zardoya R. The evolution of the mitochondrial genetic code in arthropods revisited. Mitochondrial Dna. 23: 84-91. PMID 22397376 DOI: 10.3109/19401736.2011.653801 |
0.354 |
|
2011 |
Arbiza L, Patricio M, Dopazo H, Posada D. Genome-wide heterogeneity of nucleotide substitution model fit. Genome Biology and Evolution. 3: 896-908. PMID 21824869 DOI: 10.1093/Gbe/Evr080 |
0.389 |
|
2011 |
Martin DP, Lemey P, Posada D. Analysing recombination in nucleotide sequences. Molecular Ecology Resources. 11: 943-55. PMID 21592314 DOI: 10.1111/J.1755-0998.2011.03026.X |
0.448 |
|
2011 |
Pérez-Losada M, Jobes DV, Sinangil F, Crandall KA, Arenas M, Posada D, Berman PW. Phylodynamics of HIV-1 from a phase III AIDS vaccine trial in Bangkok, Thailand. Plos One. 6: e16902. PMID 21423744 DOI: 10.1371/Journal.Pone.0016902 |
0.708 |
|
2011 |
Tazi L, Imamichi H, Hirschfeld S, Metcalf JA, Orsega S, Pérez-Losada M, Posada D, Lane HC, Crandall KA. HIV-1 infected monozygotic twins: a tale of two outcomes. Bmc Evolutionary Biology. 11: 62. PMID 21385447 DOI: 10.1186/1471-2148-11-62 |
0.546 |
|
2011 |
Romero A, Dios S, Poisa-Beiro L, Costa MM, Posada D, Figueras A, Novoa B. Individual sequence variability and functional activities of fibrinogen-related proteins (FREPs) in the Mediterranean mussel (Mytilus galloprovincialis) suggest ancient and complex immune recognition models in invertebrates. Developmental and Comparative Immunology. 35: 334-44. PMID 21034769 DOI: 10.1016/J.Dci.2010.10.007 |
0.334 |
|
2011 |
Rocha S, Harris DJ, Posada D. Cryptic diversity within the endemic prehensile-tailed gecko Urocotyledon inexpectata across the Seychelles Islands: Patterns of phylogeographical structure and isolation at the multilocus level Biological Journal of the Linnean Society. 104: 177-191. DOI: 10.1111/J.1095-8312.2011.01710.X |
0.385 |
|
2010 |
Arenas M, Posada D. Computational design of centralized HIV-1 genes. Current Hiv Research. 8: 613-21. PMID 21054255 DOI: 10.2174/157016210794088263 |
0.664 |
|
2010 |
Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P. RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics (Oxford, England). 26: 2462-3. PMID 20798170 DOI: 10.1093/Bioinformatics/Btq467 |
0.354 |
|
2010 |
Arenas M, Patricio M, Posada D, Valiente G. Characterization of phylogenetic networks with NetTest. Bmc Bioinformatics. 11: 268. PMID 20487540 DOI: 10.1186/1471-2105-11-268 |
0.643 |
|
2010 |
Glez-Peña D, Gómez-Blanco D, Reboiro-Jato M, Fdez-Riverola F, Posada D. ALTER: program-oriented conversion of DNA and protein alignments. Nucleic Acids Research. 38: W14-8. PMID 20439312 DOI: 10.1093/Nar/Gkq321 |
0.309 |
|
2010 |
Arenas M, Posada D. The effect of recombination on the reconstruction of ancestral sequences. Genetics. 184: 1133-9. PMID 20124027 DOI: 10.1534/Genetics.109.113423 |
0.681 |
|
2010 |
Arenas M, Posada D. Coalescent simulation of intracodon recombination. Genetics. 184: 429-37. PMID 19933876 DOI: 10.1534/Genetics.109.109736 |
0.686 |
|
2010 |
Pérez-Losada M, Jobes DV, Sinangil F, Crandall KA, Posada D, Berman PW. Phylodynamics of HIV-1 from a phase-III AIDS vaccine trial in North America. Molecular Biology and Evolution. 27: 417-25. PMID 19864468 DOI: 10.1093/Molbev/Msp254 |
0.539 |
|
2010 |
Pascual S, Villalba A, Abollo E, Garci M, González AF, Nombela M, Posada D, Guerra A. The mussel Xenostrobus securis: A well-established alien invader in the Ria de Vigo (Spain, NE Atlantic) Biological Invasions. 12: 2091-2103. DOI: 10.1007/S10530-009-9611-4 |
0.344 |
|
2009 |
Kosakovsky Pond SL, Posada D, Stawiski E, Chappey C, Poon AF, Hughes G, Fearnhill E, Gravenor MB, Leigh Brown AJ, Frost SD. An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1. Plos Computational Biology. 5: e1000581. PMID 19956739 DOI: 10.1371/Journal.Pcbi.1000581 |
0.394 |
|
2009 |
Pérez-Losada M, Posada D, Arenas M, Jobes DV, Sinangil F, Berman PW, Crandall KA. Ethnic differences in the adaptation rate of HIV gp120 from a vaccine trial. Retrovirology. 6: 67. PMID 19604405 DOI: 10.1186/1742-4690-6-67 |
0.695 |
|
2009 |
Abrantes J, Posada D, Guillon P, Esteves PJ, Le Pendu J. Widespread gene conversion of alpha-2-fucosyltransferase genes in mammals. Journal of Molecular Evolution. 69: 22-31. PMID 19533213 DOI: 10.1007/S00239-009-9239-0 |
0.313 |
|
2009 |
Posada D. Bioinformatics for DNA sequence analysis. Preface. Methods in Molecular Biology (Clifton, N.J.). 537: vii-viii. PMID 19514139 DOI: 10.1007/978-1-59745-251-9 |
0.334 |
|
2009 |
Abascal F, Zardoya R, Posada D. Genetic code prediction for metazoan mitochondria with GenDecoder. Methods in Molecular Biology (Clifton, N.J.). 537: 233-42. PMID 19378147 DOI: 10.1007/978-1-59745-251-9_11 |
0.367 |
|
2009 |
Posada D. Selection of models of DNA evolution with jModelTest. Methods in Molecular Biology (Clifton, N.J.). 537: 93-112. PMID 19378141 DOI: 10.1007/978-1-59745-251-9_5 |
0.339 |
|
2009 |
Iglesias Briones MJ, Morán P, Posada D. Are the sexual, somatic and genetic characters enough to solve nomenclatural problems in lumbricid taxonomy? Soil Biology and Biochemistry. 41: 2257-2271. DOI: 10.1016/J.Soilbio.2009.07.008 |
0.391 |
|
2009 |
Sotelo G, Posada D, Morán P. Low-mitochondrial diversity and lack of structure in the velvet swimming crab Necora puber along the Galician coast Marine Biology. 156: 1039-1048. DOI: 10.1007/S00227-009-1148-7 |
0.376 |
|
2008 |
Arenas M, Valiente G, Posada D. Characterization of reticulate networks based on the coalescent with recombination. Molecular Biology and Evolution. 25: 2517-20. PMID 18927089 DOI: 10.1093/Molbev/Msn219 |
0.632 |
|
2008 |
Woolley SM, Posada D, Crandall KA. A comparison of phylogenetic network methods using computer simulation. Plos One. 3: e1913. PMID 18398452 DOI: 10.1371/Journal.Pone.0001913 |
0.532 |
|
2008 |
Posada D. jModelTest: phylogenetic model averaging. Molecular Biology and Evolution. 25: 1253-6. PMID 18397919 DOI: 10.1093/Molbev/Msn083 |
0.342 |
|
2008 |
Carvajal-Rodríguez A, Posada D, Pérez-Losada M, Keller E, Abrams EJ, Viscidi RP, Crandall KA. Disease progression and evolution of the HIV-1 env gene in 24 infected infants. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 8: 110-20. PMID 18249158 DOI: 10.1016/J.Meegid.2007.10.009 |
0.552 |
|
2008 |
Sotelo G, Morán P, Fernández L, Posada D. Genetic variation of the spiny spider crab Maja brachydactyla in the northeastern Atlantic Marine Ecology Progress Series. 362: 211-223. DOI: 10.3354/Meps07433 |
0.361 |
|
2008 |
Sotelo G, Morán P, Posada D. Genetic identification of the northeastern Atlantic spiny spider crab as Maja brachydactyla Balss, 1922 Journal of Crustacean Biology. 28: 76-81. DOI: 10.1651/07-2875R.1 |
0.334 |
|
2008 |
Campos JL, Posada D, Morán P. Introgression and genetic structure in northern Spanish Atlantic salmon (Salmo salar L.) populations according to mtDNA data Conservation Genetics. 9: 157-169. DOI: 10.1007/S10592-007-9318-Y |
0.361 |
|
2007 |
Arenas M, Posada D. Recodon: coalescent simulation of coding DNA sequences with recombination, migration and demography. Bmc Bioinformatics. 8: 458. PMID 18028540 DOI: 10.1186/1471-2105-8-458 |
0.684 |
|
2007 |
Quesada H, Posada D, Caballero A, Morán P, Rolán-Alvarez E. Phylogenetic evidence for multiple sympatric ecological diversification in a marine snail. Evolution; International Journal of Organic Evolution. 61: 1600-12. PMID 17598743 DOI: 10.1111/J.1558-5646.2007.00135.X |
0.392 |
|
2007 |
Boni MF, Posada D, Feldman MW. An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics. 176: 1035-47. PMID 17409078 DOI: 10.1534/Genetics.106.068874 |
0.36 |
|
2007 |
Carvajal-Rodríguez A, Crandall KA, Posada D. Recombination favors the evolution of drug resistance in HIV-1 during antiretroviral therapy. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 7: 476-83. PMID 17369105 DOI: 10.1016/J.Meegid.2007.02.001 |
0.508 |
|
2007 |
Sierra M, Thomson MM, Posada D, Pérez L, Aragonés C, González Z, Pérez J, Casado G, Nájera R. Identification of 3 phylogenetically related HIV-1 BG intersubtype circulating recombinant forms in Cuba. Journal of Acquired Immune Deficiency Syndromes (1999). 45: 151-60. PMID 17356464 DOI: 10.1097/Qai.0B013E318046Ea47 |
0.373 |
|
2007 |
Bello G, Casado C, García S, Rodríguez C, del Romero J, Carvajal-Rodriguez A, Posada D, López-Galíndez C. Lack of temporal structure in the short term HIV-1 evolution within asymptomatic naïve patients. Virology. 362: 294-303. PMID 17275055 DOI: 10.1016/J.Virol.2006.11.039 |
0.369 |
|
2007 |
Abascal F, Posada D, Zardoya R. MtArt: a new model of amino acid replacement for Arthropoda. Molecular Biology and Evolution. 24: 1-5. PMID 17043087 DOI: 10.1093/Molbev/Msl136 |
0.323 |
|
2007 |
Campos JL, Posada D, Caballero P, Morán P. Spatio-temporal genetic variability in sea trout (Salmo trutta) populations from north-western Spain Freshwater Biology. 52: 510-524. DOI: 10.1111/J.1365-2427.2006.01721.X |
0.349 |
|
2007 |
Campos J, Morán P, Posada D, Caballero P. Spatio-temporal genetic variability of sea trout populations in Northwestern Spain Aquaculture. 272: S247. DOI: 10.1016/J.Aquaculture.2007.07.039 |
0.313 |
|
2007 |
Sotelo G, Morán P, Posada D. Identification and characterization of microsatellite loci in the spiny spider crab Maja brachydactyla Conservation Genetics. 8: 245-247. DOI: 10.1007/S10592-006-9141-X |
0.329 |
|
2006 |
Kosakovsky Pond SL, Posada D, Gravenor MB, Woelk CH, Frost SD. GARD: a genetic algorithm for recombination detection. Bioinformatics (Oxford, England). 22: 3096-8. PMID 17110367 DOI: 10.1093/Bioinformatics/Btl474 |
0.418 |
|
2006 |
Jobes DV, Daoust M, Nguyen VT, Padua A, Sinangil F, Pérez-Losada M, Crandall KA, Oliphant T, Posada D, Rambaut A, Fuchs J, Berman PW. Longitudinal population analysis of dual infection with recombination in two strains of HIV type 1 subtype B in an individual from a Phase 3 HIV vaccine efficacy trial. Aids Research and Human Retroviruses. 22: 968-78. PMID 17067266 DOI: 10.1089/Aid.2006.22.968 |
0.579 |
|
2006 |
Posada D. ModelTest Server: a web-based tool for the statistical selection of models of nucleotide substitution online. Nucleic Acids Research. 34: W700-3. PMID 16845102 DOI: 10.1093/Nar/Gkl042 |
0.321 |
|
2006 |
Abascal F, Zardoya R, Posada D. GenDecoder: genetic code prediction for metazoan mitochondria. Nucleic Acids Research. 34: W389-93. PMID 16845034 DOI: 10.1093/Nar/Gkl044 |
0.368 |
|
2006 |
Kosakovsky Pond SL, Posada D, Gravenor MB, Woelk CH, Frost SD. Automated phylogenetic detection of recombination using a genetic algorithm. Molecular Biology and Evolution. 23: 1891-901. PMID 16818476 DOI: 10.1093/Molbev/Msl051 |
0.435 |
|
2006 |
Abascal F, Posada D, Knight RD, Zardoya R. Parallel evolution of the genetic code in arthropod mitochondrial genomes. Plos Biology. 4: e127. PMID 16620150 DOI: 10.1371/Journal.Pbio.0040127 |
0.347 |
|
2006 |
Coulthart MB, Posada D, Crandall KA, Dekaban GA. On the phylogenetic placement of human T cell leukemia virus type 1 sequences associated with an Andean mummy. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 6: 91-6. PMID 16503510 DOI: 10.1016/J.Meegid.2005.02.001 |
0.555 |
|
2006 |
Carvajal-Rodríguez A, Crandall KA, Posada D. Recombination estimation under complex evolutionary models with the coalescent composite-likelihood method. Molecular Biology and Evolution. 23: 817-27. PMID 16452117 DOI: 10.1093/Molbev/Msj102 |
0.577 |
|
2006 |
Posada D, Crandall KA, Templeton AR. Nested clade analysis statistics Molecular Ecology Notes. 6: 590-593. DOI: 10.1111/J.1471-8286.2006.01368.X |
0.687 |
|
2006 |
Campos JL, Posada D, Morán P. Genetic variation at MHC, mitochondrial and microsatellite loci in isolated populations of Brown trout (Salmo trutta) Conservation Genetics. 7: 515-530. DOI: 10.1007/S10592-005-9063-Z |
0.359 |
|
2005 |
Martin DP, van der Walt E, Posada D, Rybicki EP. The evolutionary value of recombination is constrained by genome modularity. Plos Genetics. 1: e51. PMID 16244707 DOI: 10.1371/Journal.Pgen.0010051 |
0.341 |
|
2005 |
Thomson MM, Casado G, Posada D, Sierra M, Nájera R. Identification of a novel HIV-1 complex circulating recombinant form (CRF18_cpx) of Central African origin in Cuba. Aids (London, England). 19: 1155-63. PMID 15990568 DOI: 10.1097/01.Aids.0000176215.95119.1D |
0.37 |
|
2005 |
Posada D, Maxwell TJ, Templeton AR. TreeScan: a bioinformatic application to search for genotype/phenotype associations using haplotype trees. Bioinformatics (Oxford, England). 21: 2130-2. PMID 15681571 DOI: 10.1093/Bioinformatics/Bti293 |
0.563 |
|
2005 |
Martin DP, Posada D, Crandall KA, Williamson C. A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. Aids Research and Human Retroviruses. 21: 98-102. PMID 15665649 DOI: 10.1089/Aid.2005.21.98 |
0.529 |
|
2005 |
Tsaousis AD, Martin DP, Ladoukakis ED, Posada D, Zouros E. Widespread recombination in published animal mtDNA sequences. Molecular Biology and Evolution. 22: 925-33. PMID 15647518 DOI: 10.1093/Molbev/Msi084 |
0.357 |
|
2005 |
Abascal F, Zardoya R, Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics (Oxford, England). 21: 2104-5. PMID 15647292 DOI: 10.1093/Bioinformatics/Bti263 |
0.342 |
|
2005 |
Bos DH, Posada D. Using models of nucleotide evolution to build phylogenetic trees. Developmental and Comparative Immunology. 29: 211-27. PMID 15572070 DOI: 10.1016/J.Dci.2004.07.007 |
0.383 |
|
2005 |
Martin DP, Williamson C, Posada D. RDP2: recombination detection and analysis from sequence alignments. Bioinformatics (Oxford, England). 21: 260-2. PMID 15377507 DOI: 10.1093/Bioinformatics/Bth490 |
0.359 |
|
2005 |
Templeton AR, Maxwell T, Posada D, Stengård JH, Boerwinkle E, Sing CF. Tree scanning: a method for using haplotype trees in phenotype/genotype association studies. Genetics. 169: 441-53. PMID 15371364 DOI: 10.1534/Genetics.104.030080 |
0.55 |
|
2004 |
Posada D, Buckley TR. Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests. Systematic Biology. 53: 793-808. PMID 15545256 DOI: 10.1080/10635150490522304 |
0.347 |
|
2004 |
Tarjuelo I, Posada D, Crandall KA, Pascual M, Turon X. Phylogeography and speciation of colour morphs in the colonial ascidian Pseudodistoma crucigaster. Molecular Ecology. 13: 3125-36. PMID 15367125 DOI: 10.1111/J.1365-294X.2004.02306.X |
0.585 |
|
2004 |
Rambaut A, Posada D, Crandall KA, Holmes EC. The causes and consequences of HIV evolution. Nature Reviews. Genetics. 5: 52-61. PMID 14708016 DOI: 10.1038/Nrg1246 |
0.517 |
|
2003 |
Posada D. Using MODELTEST and PAUP* to select a model of nucleotide substitution. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 6.5. PMID 18428705 DOI: 10.1002/0471250953.Bi0605S00 |
0.344 |
|
2003 |
Pfenninger M, Posada D, Magnin F. Evidence for survival of Pleistocene climatic changes in Northern refugia by the land snail Trochoidea geyeri (Soós 1926) (Helicellinae, Stylommatophora). Bmc Evolutionary Biology. 3: 8. PMID 12720575 DOI: 10.1186/1471-2148-3-8 |
0.343 |
|
2003 |
Posada D, Wiuf C. Simulating haplotype blocks in the human genome. Bioinformatics (Oxford, England). 19: 289-90. PMID 12538254 DOI: 10.1093/Bioinformatics/19.2.289 |
0.345 |
|
2002 |
Posada D, Crandall KA, Holmes EC. Recombination in evolutionary genomics. Annual Review of Genetics. 36: 75-97. PMID 12429687 DOI: 10.1146/Annurev.Genet.36.040202.111115 |
0.562 |
|
2002 |
Pfenninger M, Posada D. Phylogeographic history of the land snail Candidula unifasciata (Helicellinae, Stylommatophora): fragmentation, corridor migration, and secondary contact. Evolution; International Journal of Organic Evolution. 56: 1776-88. PMID 12389722 DOI: 10.1554/0014-3820(2002)056[1776:Photls]2.0.Co;2 |
0.38 |
|
2002 |
Posada D. Evaluation of methods for detecting recombination from DNA sequences: empirical data. Molecular Biology and Evolution. 19: 708-17. PMID 11961104 DOI: 10.1093/Oxfordjournals.Molbev.A004129 |
0.373 |
|
2002 |
Posada D, Crandall KA. The effect of recombination on the accuracy of phylogeny estimation. Journal of Molecular Evolution. 54: 396-402. PMID 11847565 DOI: 10.1007/S00239-001-0034-9 |
0.591 |
|
2002 |
Clement M, Snell Q, Walke P, Posada D, Crandall K. TCS: Estimating gene genealogies Proceedings - International Parallel and Distributed Processing Symposium, Ipdps 2002. 184. DOI: 10.1109/IPDPS.2002.1016585 |
0.462 |
|
2001 |
Posada D, Crandall KA. Selecting the best-fit model of nucleotide substitution. Systematic Biology. 50: 580-601. PMID 12116655 DOI: 10.1080/10635150118469 |
0.55 |
|
2001 |
Posada D, Crandall KA. Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proceedings of the National Academy of Sciences of the United States of America. 98: 13757-62. PMID 11717435 DOI: 10.1073/Pnas.241370698 |
0.577 |
|
2001 |
Posada D. Unveiling the molecular clock in the presence of recombination. Molecular Biology and Evolution. 18: 1976-8. PMID 11557803 DOI: 10.1093/Oxfordjournals.Molbev.A003738 |
0.404 |
|
2001 |
Posada D. The effect of branch length variation on the selection of models of molecular evolution. Journal of Molecular Evolution. 52: 434-44. PMID 11443347 DOI: 10.1007/S002390010173 |
0.354 |
|
2001 |
Posada D, Crandall KA. Selecting models of nucleotide substitution: an application to human immunodeficiency virus 1 (HIV-1). Molecular Biology and Evolution. 18: 897-906. PMID 11371577 DOI: 10.1093/Oxfordjournals.Molbev.A003890 |
0.594 |
|
2001 |
Posada D, Crandall K. Simple (wrong) models for complex trees: a case from retroviridae. Molecular Biology and Evolution. 18: 271-5. PMID 11158387 DOI: 10.1093/Oxfordjournals.Molbev.A003802 |
0.475 |
|
2001 |
Posada D, Crandall KA. Intraspecific gene genealogies: trees grafting into networks. Trends in Ecology & Evolution. 16: 37-45. PMID 11146143 DOI: 10.1016/S0169-5347(00)02026-7 |
0.544 |
|
2001 |
Tarjuelo I, Posada D, Crandall KA, Pascual M, Turon X. Cryptic species of Clavelina (Ascidiacea) in two different habitats: Harbours and rocky littoral zones in the northwestern Mediterranean Marine Biology. 139: 455-462. DOI: 10.1007/S002270100587 |
0.557 |
|
2000 |
Schwenk K, Posada D, Hebert PD. Molecular systematics of European Hyalodaphnia: the role of contemporary hybridization in ancient species. Proceedings. Biological Sciences / the Royal Society. 267: 1833-42. PMID 11052533 DOI: 10.1098/Rspb.2000.1218 |
0.37 |
|
2000 |
Clement M, Posada D, Crandall KA. TCS: a computer program to estimate gene genealogies. Molecular Ecology. 9: 1657-9. PMID 11050560 DOI: 10.1046/J.1365-294X.2000.01020.X |
0.487 |
|
2000 |
Posada D, Crandall KA, Templeton AR. GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Molecular Ecology. 9: 487-8. PMID 10736051 DOI: 10.1046/J.1365-294X.2000.00887.X |
0.637 |
|
2000 |
Posada D, Crandall KA, Nguyen M, Demma JC, Viscidi RP. Population genetics of the porB gene of Neisseria gonorrhoeae: different dynamics in different homology groups. Molecular Biology and Evolution. 17: 423-36. PMID 10723743 DOI: 10.1093/Oxfordjournals.Molbev.A026322 |
0.585 |
|
1999 |
Crandall KA, Vasco DA, Posada D, Imamichi H. Advances in understanding the evolution of HIV. Aids (London, England). 13: S39-47. PMID 10885761 |
0.439 |
|
1999 |
Vila C, Amorim IR, Leonard JA, Posada D, Castroviejo J, Petrucci-Fonseca F, Crandall KA, Ellegren H, Wayne RK. Mitochondrial DNA phylogeography and population history of the grey wolf canis lupus Molecular Ecology. 8: 2089-103. PMID 10632860 DOI: 10.1046/J.1365-294X.1999.00825.X |
0.562 |
|
1999 |
Crandall KA, Posada D, Vasco D. Effective population sizes: Missing measures and missing concepts Animal Conservation. 2: 317-319. DOI: 10.1111/J.1469-1795.1999.Tb00078.X |
0.524 |
|
1998 |
Posada D, Crandall KA. MODELTEST: testing the model of DNA substitution. Bioinformatics (Oxford, England). 14: 817-8. PMID 9918953 DOI: 10.1093/Bioinformatics/14.9.817 |
0.508 |
|
Low-probability matches (unlikely to be authored by this person) |
2011 |
Darriba D, Taboada GL, Doallo R, Posada D. ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics (Oxford, England). 27: 1164-5. PMID 21335321 DOI: 10.1093/Bioinformatics/Btr088 |
0.296 |
|
2003 |
Miadlikowska J, Lutzoni F, Goward T, Zoller S, Posada D. New approach to an old problem: Incorporating signal from gap-rich regions of ITS and rDNA large subunit into phylogenetic analyses to resolve the Peltigera canina species complex. Mycologia. 95: 1181-203. PMID 21149020 DOI: 10.1080/15572536.2004.11833027 |
0.293 |
|
2005 |
Novoa B, Posada D, Figueras A. Polymorphisms in the sequences of Marteilia internal transcribed spacer region of the ribosomal RNA genes (ITS-1) in Spain: genetic types are not related with bivalve hosts. Journal of Fish Diseases. 28: 331-8. PMID 15960656 DOI: 10.1111/J.1365-2761.2005.00634.X |
0.291 |
|
2018 |
Alves JM, Posada D. Sensitivity to sequencing depth in single-cell cancer genomics. Genome Medicine. 10: 29. PMID 29661213 DOI: 10.1186/S13073-018-0537-2 |
0.289 |
|
2006 |
Gestal C, Novoa B, Posada D, Figueras A, Azevedo C. Perkinsoide chabelardi n. gen., a protozoan parasite with an intermediate evolutionary position: possible cause of the decrease of sardine fisheries? Environmental Microbiology. 8: 1105-14. PMID 16689731 DOI: 10.1111/J.1462-2920.2006.01008.X |
0.284 |
|
2017 |
Maley CC, Aktipis A, Graham TA, Sottoriva A, Boddy AM, Janiszewska M, Silva AS, Gerlinger M, Yuan Y, Pienta KJ, Anderson KS, Gatenby R, Swanton C, Posada D, Wu CI, et al. Classifying the evolutionary and ecological features of neoplasms. Nature Reviews. Cancer. PMID 28912577 DOI: 10.1038/Nrc.2017.69 |
0.283 |
|
2018 |
Vicens A, Posada D. Selective Pressures on Human Cancer Genes along the Evolution of Mammals. Genes. 9. PMID 30487452 DOI: 10.3390/Genes9120582 |
0.282 |
|
2008 |
Fonseca MM, Posada D, Harris DJ. Inverted replication of vertebrate mitochondria. Molecular Biology and Evolution. 25: 805-8. PMID 18296412 DOI: 10.1093/Molbev/Msn050 |
0.281 |
|
2020 |
Mamlouk S, Simon T, Tomás L, Wedge DC, Arnold A, Menne A, Horst D, Capper D, Morkel M, Posada D, Sers C, Bläker H. Malignant transformation and genetic alterations are uncoupled in early colorectal cancer progression. Bmc Biology. 18: 116. PMID 32895052 DOI: 10.1186/S12915-020-00844-X |
0.276 |
|
2009 |
Sotelo G, Morán P, Posada D. Molecular phylogeny and biogeographic history of the European Maja spider crabs (Decapoda, Majidae). Molecular Phylogenetics and Evolution. 53: 314-9. PMID 19460449 DOI: 10.1016/J.Ympev.2009.05.009 |
0.273 |
|
2000 |
Posada D. How does recombination affect phylogeny estimation? Trends in Ecology & Evolution. 15: 489-490. PMID 11114432 DOI: 10.1016/S0169-5347(00)02027-9 |
0.27 |
|
2019 |
Alves JM, Prado-López S, Cameselle-Teijeiro JM, Posada D. Rapid evolution and biogeographic spread in a colorectal cancer. Nature Communications. 10: 5139. PMID 31723138 DOI: 10.1038/S41467-019-12926-8 |
0.269 |
|
2007 |
Rocha S, Posada D, Carretero MA, Harris DJ. Phylogenetic affinities of Comoroan and East African day geckos (genus Phelsuma): multiple natural colonisations, introductions and island radiations. Molecular Phylogenetics and Evolution. 43: 685-92. PMID 17113791 DOI: 10.1016/J.Ympev.2006.07.010 |
0.268 |
|
2017 |
Alves JM, Prieto T, Posada D. Multiregional Tumor Trees Are Not Phylogenies. Trends in Cancer. 3: 546-550. PMID 28780931 DOI: 10.1016/J.Trecan.2017.06.004 |
0.258 |
|
2016 |
Posada D. Phylogenomics for Systematic Biology. Systematic Biology. 65: 353-6. PMID 27129844 DOI: 10.1093/Sysbio/Syw027 |
0.256 |
|
2019 |
Ren M, Feng X, Huang Y, Wang H, Hu Z, Clingenpeel S, Swan BK, Fonseca MM, Posada D, Stepanauskas R, Hollibaugh JT, Foster PG, Woyke T, Luo H. Phylogenomics suggests oxygen availability as a driving force in Thaumarchaeota evolution. The Isme Journal. PMID 31024152 DOI: 10.1038/S41396-019-0418-8 |
0.244 |
|
2004 |
Chasman DI, Posada D, Subrahmanyan L, Cook NR, Stanton VP, Ridker PM. Pharmacogenetic study of statin therapy and cholesterol reduction. Jama. 291: 2821-7. PMID 15199031 DOI: 10.1001/Jama.291.23.2821 |
0.242 |
|
2020 |
Gerdol M, Moreira R, Cruz F, Gómez-Garrido J, Vlasova A, Rosani U, Venier P, Naranjo-Ortiz MA, Murgarella M, Greco S, Balseiro P, Corvelo A, Frias L, Gut M, Gabaldón T, ... ... Posada D, et al. Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel. Genome Biology. 21: 275. PMID 33168033 DOI: 10.1186/s13059-020-02180-3 |
0.242 |
|
2014 |
Forn-Cuní G, Reis ES, Dios S, Posada D, Lambris JD, Figueras A, Novoa B. The evolution and appearance of C3 duplications in fish originate an exclusive teleost c3 gene form with anti-inflammatory activity. Plos One. 9: e99673. PMID 24926798 DOI: 10.1371/Journal.Pone.0099673 |
0.238 |
|
2015 |
Moreira R, Pereiro P, Canchaya C, Posada D, Figueras A, Novoa B. RNA-Seq in Mytilus galloprovincialis: comparative transcriptomics and expression profiles among different tissues. Bmc Genomics. 16: 728. PMID 26400066 DOI: 10.1186/S12864-015-1817-5 |
0.237 |
|
2003 |
Wiuf C, Posada D. A coalescent model of recombination hotspots. Genetics. 164: 407-17. PMID 12750351 |
0.237 |
|
2012 |
Darriba D, Taboada GL, Doallo R, Posada D. jModelTest 2: more models, new heuristics and parallel computing. Nature Methods. 9: 772. PMID 22847109 DOI: 10.1038/Nmeth.2109 |
0.234 |
|
2012 |
Moreira R, Balseiro P, Romero A, Dios S, Posada D, Novoa B, Figueras A. Gene expression analysis of clams Ruditapes philippinarum and Ruditapes decussatus following bacterial infection yields molecular insights into pathogen resistance and immunity. Developmental and Comparative Immunology. 36: 140-9. PMID 21756933 DOI: 10.1016/J.Dci.2011.06.012 |
0.232 |
|
1998 |
Comesaña AS, Posada D, Sanjuan A. Mytilus galloprovincialis Lmk. in northern Africa Journal of Experimental Marine Biology and Ecology. 223: 271-283. DOI: 10.1016/S0022-0981(97)00185-8 |
0.225 |
|
2022 |
Cerón-Romero MA, Fonseca MM, de Oliveira Martins L, Posada D, Katz LA. Phylogenomic Analyses of 2,786 Genes in 158 Lineages Support a Root of the Eukaryotic Tree of Life between Opisthokonts and All Other Lineages. Genome Biology and Evolution. 14. PMID 35880421 DOI: 10.1093/gbe/evac119 |
0.225 |
|
2016 |
Murgarella M, Puiu D, Novoa B, Figueras A, Posada D, Canchaya C. Correction: A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis. Plos One. 11: e0160081. PMID 27442122 DOI: 10.1371/Journal.Pone.0160081 |
0.221 |
|
2022 |
Garcia-Souto D, Bruzos AL, Diaz S, Rocha S, Pequeño-Valtierra A, Roman-Lewis CF, Alonso J, Rodriguez R, Costas D, Rodriguez-Castro J, Villanueva A, Silva L, Valencia JM, Annona G, Tarallo A, ... ... Posada D, et al. Mitochondrial genome sequencing of marine leukaemias reveals cancer contagion between clam species in the Seas of Southern Europe. Elife. 11. PMID 35040778 DOI: 10.7554/eLife.66946 |
0.219 |
|
2014 |
de Oliveira Martins L, Posada D. Testing for universal common ancestry. Systematic Biology. 63: 838-42. PMID 24958930 DOI: 10.1093/Sysbio/Syu041 |
0.218 |
|
2022 |
Edrisi M, Valecha MV, Chowdary SBV, Robledo S, Ogilvie HA, Posada D, Zafar H, Nakhleh L. Phylovar: toward scalable phylogeny-aware inference of single-nucleotide variations from single-cell DNA sequencing data. Bioinformatics (Oxford, England). 38: i195-i202. PMID 35758771 DOI: 10.1093/bioinformatics/btac254 |
0.213 |
|
2010 |
Rocha S, Rösler H, Gehring PS, Glaw F, Posada D, Harris DJ, Vences M. Phylogenetic systematics of day geckos, genus Phelsuma, based on molecular and morphological data (Squamata: Gekkonidae) Zootaxa. 1-28. DOI: 10.11646/Zootaxa.2429.1.1 |
0.208 |
|
2022 |
Valecha M, Posada D. Somatic variant calling from single-cell DNA sequencing data. Computational and Structural Biotechnology Journal. 20: 2978-2985. PMID 35782734 DOI: 10.1016/j.csbj.2022.06.013 |
0.207 |
|
2023 |
Trovao NS, Pan V, Goel C, Gallego-García P, Liu Y, Barbara C, Borg R, Briffa M, Cilia C, Grech L, Vassallo M, Treangen TJ, Posada D, Beheshti A, Borg J, et al. Evolutionary and spatiotemporal analyses reveal multiple introductions and cryptic transmission of SARS-CoV-2 VOC/VOI in Malta. Microbiology Spectrum. e0153923. PMID 37800925 DOI: 10.1128/spectrum.01539-23 |
0.205 |
|
2022 |
Gallego-García P, Varela N, Estévez-Gómez N, De Chiara L, Fernández-Silva I, Valverde D, Sapoval N, Treangen TJ, Regueiro B, Cabrera-Alvargonzález JJ, Del Campo V, Pérez S, Posada D. Limited genomic reconstruction of SARS-CoV-2 transmission history within local epidemiological clusters. Virus Evolution. 8: veac008. PMID 35242361 DOI: 10.1093/ve/veac008 |
0.202 |
|
2022 |
Kang S, Borgsmüller N, Valecha M, Kuipers J, Alves JM, Prado-López S, Chantada D, Beerenwinkel N, Posada D, Szczurek E. SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data. Genome Biology. 23: 248. PMID 36451239 DOI: 10.1186/s13059-022-02813-9 |
0.2 |
|
2023 |
Bruzos AL, Santamarina M, García-Souto D, Díaz S, Rocha S, Zamora J, Lee Y, Viña-Feás A, Quail MA, Otero I, Pequeño-Valtierra A, Temes J, Rodriguez-Castro J, Aramburu L, Vidal-Capón A, ... ... Posada D, et al. Somatic evolution of marine transmissible leukemias in the common cockle, Cerastoderma edule. Nature Cancer. PMID 37783803 DOI: 10.1038/s43018-023-00641-9 |
0.199 |
|
2022 |
Kozlov A, Alves JM, Stamatakis A, Posada D. CellPhy: accurate and fast probabilistic inference of single-cell phylogenies from scDNA-seq data. Genome Biology. 23: 37. PMID 35081992 DOI: 10.1186/s13059-021-02583-w |
0.196 |
|
2020 |
Sapoval N, Mahmoud M, Jochum MD, Liu Y, Leo Elworth RA, Wang Q, Albin D, Ogilvie H, Lee MD, Villapol S, Hernandez KM, Berry IM, Foox J, Beheshti A, Ternus K, ... ... Posada D, et al. Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission. Biorxiv : the Preprint Server For Biology. PMID 32637955 DOI: 10.1101/2020.07.02.184481 |
0.196 |
|
2021 |
Sapoval N, Mahmoud M, Jochum M, Liu Y, Elworth RAL, Wang Q, Albin D, Ogilvie H, Lee MD, Villapol S, Hernandez K, Maljkovic Berry I, Foox J, Beheshti A, Ternus K, ... ... Posada D, et al. Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission. Genome Research. PMID 33602693 DOI: 10.1101/gr.268961.120 |
0.194 |
|
2009 |
Rocha S, Vences M, Glaw F, Posada D, Harris DJ. Multigene phylogeny of Malagasy day geckos of the genus Phelsuma. Molecular Phylogenetics and Evolution. 52: 530-7. PMID 19362158 DOI: 10.1016/J.Ympev.2009.03.032 |
0.184 |
|
2021 |
Carvalho-Correia E, Calçada C, Branca F, Estévez-Gómez N, De Chiara L, Varela N, Gallego-García P, Posada D, Sousa H, Sousa J, Veiga MI, Osório NS. OmniSARS2: A Highly Sensitive and Specific RT-qPCR-Based COVID-19 Diagnostic Method Designed to Withstand SARS-CoV-2 Lineage Evolution. Biomedicines. 9. PMID 34680431 DOI: 10.3390/biomedicines9101314 |
0.184 |
|
2012 |
Arenas M, Posada D. Simulation of coding sequence evolution Codon Evolution: Mechanisms and Models. DOI: 10.1093/acprof:osobl/9780199601165.003.0009 |
0.179 |
|
2023 |
Borgsmüller N, Valecha M, Kuipers J, Beerenwinkel N, Posada D. Single-cell phylogenies reveal changes in the evolutionary rate within cancer and healthy tissues. Cell Genomics. 3: 100380. PMID 37719146 DOI: 10.1016/j.xgen.2023.100380 |
0.163 |
|
2022 |
Alves JM, Prado-López S, Tomás L, Valecha M, Estévez-Gómez N, Alvariño P, Geisel D, Modest DP, Sauer IM, Pratschke J, Raschzok N, Sers C, Mamlouk S, Posada D. Clonality and timing of relapsing colorectal cancer metastasis revealed through whole-genome single-cell sequencing. Cancer Letters. 543: 215767. PMID 35688262 DOI: 10.1016/j.canlet.2022.215767 |
0.16 |
|
2011 |
Darriba D, Taboada GL, Doallo R, Posada D. ProtTest-HPC: Fast selection of best-fit models of protein evolution Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6586: 177-184. DOI: 10.1007/978-3-642-21878-1_22 |
0.155 |
|
2011 |
Darriba D, Taboada GL, Doallo R, Posada D. ProtTest-HPC: Fast selection of best-fit models of protein evolution Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6586: 177-184. DOI: 10.1007/978-3-642-21878-1_22 |
0.155 |
|
2009 |
Arenas M, Valiente G, Posada D. Characterization of reticulate networks based on the coalescent with recombination (Molecular Biology and Evolution (2008) 25, (2517-2520) DOI: 10.1093/molbev/msn219) Molecular Biology and Evolution. 26: 951. DOI: 10.1093/molbev/msn291 |
0.152 |
|
2022 |
Alves JM, Estévez-Gómez N, Valecha M, Prado-López S, Tomás L, Alvariño P, Piñeiro R, Muinelo-Romay L, Mondelo-Macía P, Salgado M, Iglesias-Gómez A, Codesido-Prada L, Cubiella J, Posada D. Comparative analysis of capture methods for genomic profiling of circulating tumor cells in colorectal cancer. Genomics. 110500. PMID 36202322 DOI: 10.1016/j.ygeno.2022.110500 |
0.151 |
|
2010 |
Loureiro M, Pan M, Rodríguez-Pascual M, Posada D, Mayo R. Grid selection of models of nucleotide substitution. Studies in Health Technology and Informatics. 159: 244-8. PMID 20543444 DOI: 10.3233/978-1-60750-583-9-244 |
0.149 |
|
2021 |
Crespo FF, Posada D, Wiuf C. Coalescent models derived from birth-death processes. Theoretical Population Biology. 142: 1-11. PMID 34563554 DOI: 10.1016/j.tpb.2021.09.003 |
0.149 |
|
2009 |
Patricio M, Huerta-Cepas J, Gabaldón T, Zardoya R, Posada D. Automatic prediction of the genetic code Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5518: 1125-1129. DOI: 10.1007/978-3-642-02481-8_170 |
0.144 |
|
2009 |
Patricio M, Huerta-Cepas J, Gabaldón T, Zardoya R, Posada D. Automatic prediction of the genetic code Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5518: 1125-1129. DOI: 10.1007/978-3-642-02481-8_170 |
0.144 |
|
2022 |
Álvarez H, Ruiz-Mateos E, Juiz-González PM, Vitallé J, Viéitez I, Vázquez-Friol MDC, Torres-Beceiro I, Pérez-Gómez A, Gallego-García P, Estévez-Gómez N, De Chiara L, Poveda E, Posada D, Llibre JM. SARS-CoV-2 Evolution and Spike-Specific CD4+ T-Cell Response in Persistent COVID-19 with Severe HIV Immune Suppression. Microorganisms. 10. PMID 35056592 DOI: 10.3390/microorganisms10010143 |
0.141 |
|
2023 |
Trigo-Tasende N, Vallejo JA, Rumbo-Feal S, Conde-Pérez K, Vaamonde M, López-Oriona Á, Barbeito I, Nasser-Ali M, Reif R, Rodiño-Janeiro BK, Fernández-Álvarez E, Iglesias-Corrás I, Freire B, Tarrío-Saavedra J, Tomás L, ... ... Posada D, et al. Wastewater early warning system for SARS-CoV-2 outbreaks and variants in a Coruña, Spain. Environmental Science and Pollution Research International. 1-20. PMID 37286834 DOI: 10.1007/s11356-023-27877-3 |
0.138 |
|
2011 |
Rocha S, Harris DJ, Posada D. Cryptic diversity within the endemic prehensile-tailed gecko Urocotyledon inexpectata across the Seychelles Islands: Patterns of phylogeographical structure and isolation at the multilocus level Biological Journal of the Linnean Society. 104: 177-191. DOI: 10.1111/j.1095-8312.2011.01710.x |
0.124 |
|
2024 |
Gallego-García P, Estévez-Gómez N, De Chiara L, Alvariño P, Juiz-González PM, Torres-Beceiro I, Poza M, Vallejo JA, Rumbo-Feal S, Conde-Pérez K, Aja-Macaya P, Ladra S, Moreno-Flores A, Gude-González MJ, Coira A, ... ... Posada D, et al. Dispersal history of SARS-CoV-2 in Galicia, Spain. Medrxiv : the Preprint Server For Health Sciences. PMID 38463998 DOI: 10.1101/2024.02.27.24303385 |
0.124 |
|
2023 |
Liu Y, Sapoval N, Gallego-García P, Tomás L, Posada D, Treangen TJ, Stadler LB. Crykey: Rapid Identification of SARS-CoV-2 Cryptic Mutations in Wastewater. Medrxiv : the Preprint Server For Health Sciences. PMID 37986916 DOI: 10.1101/2023.06.16.23291524 |
0.123 |
|
2010 |
Rocha S, Rösler H, Gehring PS, Glaw F, Posada D, Harris DJ, Vences M. Phylogenetic systematics of day geckos, genus Phelsuma, based on molecular and morphological data (Squamata: Gekkonidae) Zootaxa. 1-28. |
0.123 |
|
2011 |
Darriba D, Taboada GL, Doallo R, Posada D. HPC selection of models of DNA substitution Proceedings of the 9th International Conference On Computational Methods in Systems Biology, Cmsb'11. 65-72. DOI: 10.1145/2037509.2037520 |
0.118 |
|
2011 |
Darriba D, Taboada GL, Doallo R, Posada D. HPC selection of models of DNA substitution Proceedings of the 9th International Conference On Computational Methods in Systems Biology, Cmsb'11. 65-72. DOI: 10.1145/2037509.2037520 |
0.118 |
|
2022 |
Almeida J, Pérez-Figueroa A, Alves JM, Valecha M, Prado-López S, Alvariño P, Cameselle-Teijeiro JM, Chantada D, Fonseca MM, Posada D. Single-cell mtDNA heteroplasmy in colorectal cancer. Genomics. 110315. PMID 35181467 DOI: 10.1016/j.ygeno.2022.110315 |
0.118 |
|
2016 |
Rodríguez-Pascual M, Kanellopoulos C, Rubio-Montero AJ, Darriba D, Prnjat O, Posada D, Mayo-García R. Adapting reproducible research capabilities to resilient distributed calculations International Journal of Grid and High Performance Computing. 8: 58-69. DOI: 10.4018/IJGHPC.2016010105 |
0.115 |
|
2014 |
Darriba D, Taboada GL, Doallo R, Posada D. High-performance computing selection of models of DNA substitution for multicore clusters International Journal of High Performance Computing Applications. 28: 112-125. DOI: 10.1177/1094342013495095 |
0.101 |
|
2009 |
Iglesias Briones MJ, Morán P, Posada D. Are the sexual, somatic and genetic characters enough to solve nomenclatural problems in lumbricid taxonomy? Soil Biology and Biochemistry. 41: 2257-2271. DOI: 10.1016/j.soilbio.2009.07.008 |
0.1 |
|
2010 |
Pascual S, Villalba A, Abollo E, Garci M, González AF, Nombela M, Posada D, Guerra A. The mussel Xenostrobus securis: A well-established alien invader in the Ria de Vigo (Spain, NE Atlantic) Biological Invasions. 12: 2091-2103. DOI: 10.1007/s10530-009-9611-4 |
0.074 |
|
2010 |
ROCHA S, RÖSLER H, GEHRING P, GLAW F, POSADA D, HARRIS DJ, VENCES M. Phylogenetic systematics of day geckos, genus Phelsuma, based on molecular and morphological data (Squamata: Gekkonidae) Zootaxa. 2429: 1. DOI: 10.11646/ZOOTAXA.2429.1.1 |
0.053 |
|
2011 |
Heldt CL, Sorci M, Posada D, Hirsa A, Belfort G. Detection and reduction of microaggregates in insulin preparations. Biotechnology and Bioengineering. 108: 237-41. PMID 20717970 DOI: 10.1002/Bit.22902 |
0.042 |
|
2015 |
Young JE, Posada D, Lopez JM, Hirsa AH. Flow-induced 2D protein crystallization: characterization of the coupled interfacial and bulk flows. Soft Matter. 11: 3618-28. PMID 25805062 DOI: 10.1039/C5Sm00429B |
0.04 |
|
2023 |
Becerra MD, Botero MO, Velez ICB, Silva ASS, S Garcia LM, Posada DSO. El Ser del Terapeuta: A narrative examination into family-of-origin influence on the professional self of students in family therapy training in Colombia. Journal of Marital and Family Therapy. PMID 36786525 DOI: 10.1111/jmft.12634 |
0.038 |
|
2012 |
Posada D, Tessier PM, Hirsa AH. Removal versus fragmentation of amyloid-forming precursors via membrane filtration. Biotechnology and Bioengineering. 109: 840-5. PMID 22012557 DOI: 10.1002/Bit.24341 |
0.038 |
|
2015 |
Posada DZ, Aristizabal Ceballos JH. The challenge of geohazards in the replacement of hydrocarbon pipelines Asme 2015 International Pipeline Geotechnical Conference, Ipg 2015. DOI: 10.1115/IPG2015-8516 |
0.031 |
|
2013 |
Posada D, Dort S, Chayer B, Shahriari S, Cloutier G, Liebgott H, Garcia D. Towards high frame rate cardiac ultrasonography - A circular wave imaging approach Ieee International Ultrasonics Symposium, Ius. 2018-2021. DOI: 10.1109/ULTSYM.2013.0515 |
0.03 |
|
2013 |
Posada D, Dort S, Chayer B, Shahriari S, Cloutier G, Liebgott H, Garcia D. Towards high frame rate cardiac ultrasonography - A circular wave imaging approach Ieee International Ultrasonics Symposium, Ius. 2018-2021. DOI: 10.1109/ULTSYM.2013.0515 |
0.03 |
|
2009 |
Olaya N, Posada DJ. Non invasive prenatal diagnosis: Analysis of circulating fetal DNA and cells in maternal blood | El diagnóstico prenatal no invasor: Análisis de células y ADN fetal circulantes en la sangre materna Iatreia. 22: 342-349. |
0.029 |
|
2009 |
Olaya N, Posada DJ. Non invasive prenatal diagnosis: Analysis of circulating fetal DNA and cells in maternal blood | El diagnóstico prenatal no invasor: Análisis de células y ADN fetal circulantes en la sangre materna Iatreia. 22: 342-349. |
0.029 |
|
2010 |
Alejano LR, Posada D, Rodriguez-Dono A. Servo-controlled strength tests on moderately weathered granite Rock Engineering in Difficult Ground Conditions - Soft Rocks and Karst - Proceedings of the Regional Symposium of the International Society For Rock Mechanics, Eurock 2009. 181-186. |
0.025 |
|
2010 |
Alejano LR, Posada D, Rodriguez-Dono A. Servo-controlled strength tests on moderately weathered granite Rock Engineering in Difficult Ground Conditions - Soft Rocks and Karst - Proceedings of the Regional Symposium of the International Society For Rock Mechanics, Eurock 2009. 181-186. |
0.025 |
|
2013 |
Posada DG, Arredondo HIV. Energy and exergy analysis of the biodiesel production process using jatropha curcas Proceedings of the 26th International Conference On Efficiency, Cost, Optimization, Simulation and Environmental Impact of Energy Systems, Ecos 2013. |
0.025 |
|
2013 |
Posada DG, Arredondo HIV. Energy and exergy analysis of the biodiesel production process using jatropha curcas Proceedings of the 26th International Conference On Efficiency, Cost, Optimization, Simulation and Environmental Impact of Energy Systems, Ecos 2013. |
0.025 |
|
2015 |
Posada DZ, Aristizábal Ceballos JH, Chaves Agudelo JF, Romero MEP. Approach to risk management for the hydrocarbon-transport infrastructure with regard to climate change Asme 2015 International Pipeline Geotechnical Conference, Ipg 2015. DOI: 10.1115/IPG2015-8544 |
0.019 |
|
2020 |
Vadillo G, Bucio J, Hidalgo A, Posada D, Valencia PV, Terrazas O. Bachillerato policial: completo, dual y basado en MOOC Revista Mexicana De Bachillerato a Distancia. 12. DOI: 10.22201/cuaed.20074751e.2020.23.75166 |
0.018 |
|
2011 |
Télles AC, Luna Jde J, Posada DM, Bouscoulet LT. Hemoptysis in a patient with testicular microlithiasis and a germ cell tumor: a rare combination. Jornal Brasileiro De Pneumologia : Publicaça̋O Oficial Da Sociedade Brasileira De Pneumologia E Tisilogia. 37: 277-80. PMID 21537665 DOI: 10.1590/S1806-37132011000200019 |
0.016 |
|
2014 |
Posada D, Chayer B, Cloutier G, Garcia D. Nyquist velocity extension in ultrafast color Doppler Ieee International Ultrasonics Symposium, Ius. 2261-2264. DOI: 10.1109/ULTSYM.2014.0563 |
0.01 |
|
2014 |
Posada D, Chayer B, Cloutier G, Garcia D. Nyquist velocity extension in ultrafast color Doppler Ieee International Ultrasonics Symposium, Ius. 2261-2264. DOI: 10.1109/ULTSYM.2014.0563 |
0.01 |
|
2014 |
Rodríguez-Pascual M, Rubio-Montero AJ, Mayo-Garcia R, Kanellopoulos C, Prnjat O, Darriba D, Posada D. A Fault Tolerant Workflow for Reproducible Research Proceedings - 2014 Annual Global Online Conference On Information and Computer Technology, Gocict 2014. 70-75. DOI: 10.1109/GOCICT.2014.10 |
0.01 |
|
2014 |
Posada D, Betancourt P, Fuentes K, Marrero S, Liendo F, Brito JL. Catalytic wet air oxidation of oilfield produced wastewater containing refractory organic pollutants over copper/cerium-manganese oxide Reaction Kinetics, Mechanisms and Catalysis. 112: 347-360. DOI: 10.1007/s11144-014-0711-5 |
0.01 |
|
2014 |
Posada D, Betancourt P, Fuentes K, Marrero S, Liendo F, Brito JL. Catalytic wet air oxidation of oilfield produced wastewater containing refractory organic pollutants over copper/cerium-manganese oxide Reaction Kinetics, Mechanisms and Catalysis. 112: 347-360. DOI: 10.1007/s11144-014-0711-5 |
0.01 |
|
2011 |
Alba FA, Urbina AG, Castro CT, Aristizabal JH, Posada DZ, Velilla LM, Mora AM, Cuaical C. Risk and integrity management of pipelines and tanks in Ecopetrol SA Ppim 2011 - 23rd Pipeline Pigging and Integrity Management. |
0.01 |
|
2011 |
Alba FA, Urbina AG, Castro CT, Aristizabal JH, Posada DZ, Velilla LM, Mora AM, Cuaical C. Risk and integrity management of pipelines and tanks in Ecopetrol SA Ppim 2011 - 23rd Pipeline Pigging and Integrity Management. |
0.01 |
|
2009 |
Posada D. Preface Methods in Molecular Biology. 537: vii-viii. |
0.01 |
|
2009 |
Posada D. Preface Methods in Molecular Biology. 537: vii-viii. |
0.01 |
|
2008 |
Carmona RE, Posada DM, Manríquez MEV. Pulmonary carcinoid tumor. Experience of 10 years | Tumor carcinoide pulmonar. Experiencia de 10 años Revista Del Instituto Nacional De Enfermedades Respiratorias. 21: 107-113. |
0.01 |
|
2006 |
Posada D, Betancourt P, Liendo F, Brito JL. Catalytic wet air oxidation of aqueous solutions of substituted phenols Catalysis Letters. 106: 81-88. DOI: 10.1007/s10562-005-9195-2 |
0.01 |
|
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