| Year |
Citation |
Score |
| 2023 |
Flouri T, Jiao X, Huang J, Rannala B, Yang Z. Efficient Bayesian inference under the multispecies coalescent with migration. Proceedings of the National Academy of Sciences of the United States of America. 120: e2310708120. PMID 37871206 DOI: 10.1073/pnas.2310708120 |
0.588 |
|
| 2023 |
May MR, Rannala B. Phylogenies increase power to detect highly transmissible viral genome variants. Medrxiv : the Preprint Server For Health Sciences. PMID 37577556 DOI: 10.1101/2023.07.28.23293332 |
0.659 |
|
| 2023 |
Nagel AA, Rannala B. Bayesian phylogenetic inference of HIV latent lineage ages using serial sequences. Journal of the Royal Society, Interface. 20: 20230022. PMID 37073519 DOI: 10.1098/rsif.2023.0022 |
0.744 |
|
| 2023 |
Tiley GP, Flouri T, Jiao X, Poelstra JW, Xu B, Zhu T, Rannala B, Yoder AD, Yang Z. Estimation of species divergence times in presence of cross-species gene flow. Systematic Biology. PMID 36961245 DOI: 10.1093/sysbio/syad015 |
0.639 |
|
| 2023 |
Gao J, May MR, Rannala B, Moore BR. Model misspecification misleads inference of the spatial dynamics of disease outbreaks. Proceedings of the National Academy of Sciences of the United States of America. 120: e2213913120. PMID 36897983 DOI: 10.1073/pnas.2213913120 |
0.741 |
|
| 2023 |
Chakraborty S, Rannala B. An Efficient Exact Algorithm for Identifying Hybrids Using Population Genomic Sequences. Genetics. PMID 36708142 DOI: 10.1093/genetics/iyad011 |
0.707 |
|
| 2023 |
Gao J, May MR, Rannala B, Moore BR. PrioriTree: a utility for improving phylodynamic analyses in BEAST. Bioinformatics (Oxford, England). 39. PMID 36592035 DOI: 10.1093/bioinformatics/btac849 |
0.757 |
|
| 2022 |
Flouri T, Huang J, Jiao X, Kapli P, Rannala B, Yang Z. Bayesian Phylogenetic Inference using Relaxed-clocks and the Multispecies Coalescent. Molecular Biology and Evolution. 39. PMID 35907248 DOI: 10.1093/molbev/msac161 |
0.652 |
|
| 2022 |
Gao J, May MR, Rannala B, Moore BR. New Phylogenetic Models Incorporating Interval-Specific Dispersal Dynamics Improve Inference of Disease Spread. Molecular Biology and Evolution. PMID 35861314 DOI: 10.1093/molbev/msac159 |
0.77 |
|
| 2020 |
Jiao X, Flouris T, Rannala B, Yang Z. The Impact of Cross-Species Gene Flow on Species Tree Estimation. Systematic Biology. PMID 31977022 DOI: 10.1093/Sysbio/Syaa001 |
0.659 |
|
| 2019 |
Flouris T, Jiao X, Rannala B, Yang Z. A Bayesian implementation of the multispecies coalescent model with introgression for phylogenomic analysis. Molecular Biology and Evolution. PMID 31825513 DOI: 10.1093/Molbev/Msz296 |
0.696 |
|
| 2018 |
Flouri T, Jiao X, Rannala B, Yang Z. Species Tree Inference with bpp Using Genomic Sequences and the Multispecies Coalescent. Molecular Biology and Evolution. PMID 30053098 DOI: 10.1093/Molbev/Msy147 |
0.669 |
|
| 2018 |
Leaché AD, Zhu T, Rannala B, Yang Z. The Spectre of Too Many Species. Systematic Biology. PMID 29982825 DOI: 10.1093/Sysbio/Syy051 |
0.691 |
|
| 2017 |
Yang Z, Rannala B. Bayesian Species Identification under the Multispecies Coalescent Provides Significant Improvements to DNA Barcoding Analyses. Molecular Ecology. PMID 28281309 DOI: 10.1111/Mec.14093 |
0.656 |
|
| 2017 |
Rannala B, Yang Z. Efficient Bayesian species tree inference under the multispecies coalescent. Systematic Biology. PMID 28053140 DOI: 10.1093/Sysbio/Syw119 |
0.68 |
|
| 2016 |
Moore BR, Höhna S, May MR, Rannala B, Huelsenbeck JP. Critically evaluating the theory and performance of Bayesian analysis of macroevolutionary mixtures. Proceedings of the National Academy of Sciences of the United States of America. PMID 27512038 DOI: 10.1073/Pnas.1518659113 |
0.796 |
|
| 2016 |
Rannala B. Conceptual issues in Bayesian divergence time estimation Philosophical Transactions of the Royal Society B. 371: 20150134. PMID 27325831 DOI: 10.1098/Rstb.2015.0134 |
0.483 |
|
| 2016 |
Alhaddad H, Zhang C, Rannala B, Lyons LA. A Glance at Recombination Hotspots in the Domestic Cat. Plos One. 11: e0148710. PMID 26859385 DOI: 10.1371/Journal.Pone.0148710 |
0.306 |
|
| 2015 |
Rannala B. The art and science of species delimitation Current Zoology. 61: 846-853. DOI: 10.1093/Czoolo/61.5.846 |
0.456 |
|
| 2014 |
Yang Z, Rannala B. Unguided species delimitation using DNA sequence data from multiple Loci. Molecular Biology and Evolution. 31: 3125-35. PMID 25274273 DOI: 10.1093/Molbev/Msu279 |
0.663 |
|
| 2014 |
Wang Y, Rannala B. Bayesian inference of shared recombination hotspots between humans and chimpanzees. Genetics. 198: 1621-8. PMID 25261696 DOI: 10.1534/Genetics.114.168377 |
0.391 |
|
| 2014 |
Zhang C, Rannala B, Yang Z. Bayesian species delimitation can be robust to guide-tree inference errors. Systematic Biology. 63: 993-1004. PMID 25096853 DOI: 10.1093/Sysbio/Syu052 |
0.641 |
|
| 2014 |
Leaché AD, Harris RB, Rannala B, Yang Z. The influence of gene flow on species tree estimation: a simulation study. Systematic Biology. 63: 17-30. PMID 23945075 DOI: 10.1093/Sysbio/Syt049 |
0.652 |
|
| 2013 |
Rannala B, Yang Z. Improved reversible jump algorithms for Bayesian species delimitation. Genetics. 194: 245-53. PMID 23502678 DOI: 10.1534/Genetics.112.149039 |
0.642 |
|
| 2013 |
Padhukasahasram B, Rannala B. Meiotic gene-conversion rate and tract length variation in the human genome. European Journal of Human Genetics : Ejhg. PMID 23443031 DOI: 10.1038/Ejhg.2013.30 |
0.448 |
|
| 2012 |
Yang Z, Rannala B. Molecular phylogenetics: principles and practice. Nature Reviews. Genetics. 13: 303-14. PMID 22456349 DOI: 10.1038/Nrg3186 |
0.64 |
|
| 2012 |
Zhang C, Rannala B, Yang Z. Robustness of compound Dirichlet priors for Bayesian inference of branch lengths. Systematic Biology. 61: 779-84. PMID 22328570 DOI: 10.1093/Sysbio/Sys030 |
0.601 |
|
| 2012 |
Rannala B, Zhu T, Yang Z. Tail paradox, partial identifiability, and influential priors in Bayesian branch length inference. Molecular Biology and Evolution. 29: 325-35. PMID 21890479 DOI: 10.1093/Molbev/Msr210 |
0.62 |
|
| 2011 |
Padhukasahasram B, Rannala B. Bayesian population genomic inference of crossing over and gene conversion. Genetics. 189: 607-19. PMID 21840857 DOI: 10.1534/Genetics.111.130195 |
0.484 |
|
| 2011 |
Leaché AD, Rannala B. The accuracy of species tree estimation under simulation: a comparison of methods. Systematic Biology. 60: 126-37. PMID 21088009 DOI: 10.1093/Sysbio/Syq073 |
0.501 |
|
| 2010 |
Yang Z, Rannala B. Bayesian species delimitation using multilocus sequence data. Proceedings of the National Academy of Sciences of the United States of America. 107: 9264-9. PMID 20439743 DOI: 10.1073/Pnas.0913022107 |
0.681 |
|
| 2009 |
Wang Y, Rannala B. Population genomic inference of recombination rates and hotspots. Proceedings of the National Academy of Sciences of the United States of America. 106: 6215-6219. PMID 19342488 DOI: 10.1073/Pnas.0900418106 |
0.45 |
|
| 2008 |
Wang Y, Rannala B. Bayesian inference of fine-scale recombination rates using population genomic data Philosophical Transactions of the Royal Society B. 363: 3921-3930. PMID 18852101 DOI: 10.1098/Rstb.2008.0172 |
0.491 |
|
| 2008 |
Fetterman CD, Rannala B, Walter MA. Identification and analysis of evolutionary selection pressures acting at the molecular level in five forkhead subfamilies Bmc Evolutionary Biology. 8: 261-261. PMID 18816404 DOI: 10.1186/1471-2148-8-261 |
0.312 |
|
| 2008 |
Rannala B, Yang Z. Phylogenetic inference using whole genomes. Annual Review of Genomics and Human Genetics. 9: 217-31. PMID 18767964 DOI: 10.1146/Annurev.Genom.9.081307.164407 |
0.664 |
|
| 2008 |
Mateiu LM, Rannala BH. Bayesian inference of errors in ancient DNA caused by postmortem degradation. Molecular Biology and Evolution. 25: 1503-11. PMID 18420593 DOI: 10.1093/Molbev/Msn095 |
0.391 |
|
| 2007 |
Cranston KA, Rannala B. Summarizing a posterior distribution of trees using agreement subtrees. Systematic Biology. 56: 578-90. PMID 17654363 DOI: 10.1080/10635150701485091 |
0.77 |
|
| 2007 |
Ro S, Rannala B. Inferring somatic mutation rates using the stop-enhanced green fluorescent protein mouse Genetics. 177: 9-16. PMID 17603123 DOI: 10.1534/Genetics.106.069310 |
0.357 |
|
| 2007 |
Rannala B, Yang Z. Inferring speciation times under an episodic molecular clock. Systematic Biology. 56: 453-66. PMID 17558967 DOI: 10.1080/10635150701420643 |
0.691 |
|
| 2006 |
Mateiu L, Rannala B. Inferring Complex DNA Substitution Processes on Phylogenies Using Uniformization and Data Augmentation Systematic Biology. 55: 259-269. PMID 16551582 DOI: 10.1080/10635150500541599 |
0.418 |
|
| 2006 |
Yang Z, Rannala B. Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds. Molecular Biology and Evolution. 23: 212-26. PMID 16177230 DOI: 10.1093/Molbev/Msj024 |
0.658 |
|
| 2005 |
Yang Z, Rannala B. Branch-length prior influences Bayesian posterior probability of phylogeny. Systematic Biology. 54: 455-70. PMID 16012111 DOI: 10.1080/10635150590945313 |
0.684 |
|
| 2005 |
Wang Y, Rannala B. In Silico Analysis of Disease-Association Mapping Strategies Using the Coalescent Process and Incorporating Ascertainment and Selection American Journal of Human Genetics. 76: 1066-1073. PMID 15818531 DOI: 10.1086/430472 |
0.383 |
|
| 2005 |
Cranston K, Rannala B. Closing the gap between rocks and clocks Heredity. 94: 461-462. PMID 15714220 DOI: 10.1038/Sj.Hdy.6800644 |
0.795 |
|
| 2004 |
Huelsenbeck JP, Rannala B. Frequentist properties of bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models Systematic Biology. 53: 904-913. PMID 15764559 DOI: 10.1080/10635150490522629 |
0.705 |
|
| 2004 |
Beaumont MA, Rannala B. The Bayesian revolution in genetics. Nature Reviews. Genetics. 5: 251-61. PMID 15131649 DOI: 10.1038/Nrg1318 |
0.354 |
|
| 2004 |
Wilson GA, Rannala B. Bayesian inference of recent migration rates using multilocus genotypes. Genetics. 163: 1177-91. PMID 12663554 DOI: 10.1093/genetics/163.3.1177 |
0.354 |
|
| 2003 |
Yang Z, Ro S, Rannala B. Likelihood models of somatic mutation and codon substitution in cancer genes. Genetics. 165: 695-705. PMID 14573481 |
0.486 |
|
| 2003 |
Rannala B, Yang Z. Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci. Genetics. 164: 1645-56. PMID 12930768 |
0.663 |
|
| 2003 |
Huelsenbeck JP, Rannala B. Detecting correlation between characters in a comparative analysis with uncertain phylogeny. Evolution; International Journal of Organic Evolution. 57: 1237-47. PMID 12894932 DOI: 10.1111/J.0014-3820.2003.Tb00332.X |
0.689 |
|
| 2002 |
Rannala B. Identifiability of parameters in MCMC Bayesian inference of phylogeny. Systematic Biology. 51: 754-760. PMID 12396589 DOI: 10.1080/10635150290102429 |
0.449 |
|
| 2002 |
Fisher MC, Rannala B, Chaturvedi V, Taylor JW. Disease surveillance in recombining pathogens: multilocus genotypes identify sources of human Coccidioides infections. Proceedings of the National Academy of Sciences of the United States of America. 99: 9067-71. PMID 12084944 DOI: 10.1073/Pnas.132178099 |
0.334 |
|
| 2002 |
Reeve JP, Rannala B. DMLE+: Bayesian linkage disequilibrium gene mapping. Bioinformatics. 18: 894-895. PMID 12075030 DOI: 10.1093/Bioinformatics/18.6.894 |
0.376 |
|
| 2001 |
Rannala B. Finding genes influencing susceptibility to complex diseases in the post-genome era. American Journal of Pharmacogenomics. 1: 203-221. PMID 12083968 DOI: 10.2165/00129785-200101030-00005 |
0.367 |
|
| 2001 |
Rannala B, Bertorelle G. Using linked markers to infer the age of a mutation. Human Mutation. 18: 87-100. PMID 11462233 DOI: 10.1002/Humu.1158 |
0.404 |
|
| 2001 |
Rannala B, Reeve JP. High-Resolution Multipoint Linkage-Disequilibrium Mapping in the Context of a Human Genome Sequence American Journal of Human Genetics. 69: 159-178. PMID 11410841 DOI: 10.1086/321279 |
0.384 |
|
| 2000 |
Slatkin M, Rannala B. Estimating allele age. Annual Review of Genomics and Human Genetics. 1: 225-49. PMID 11701630 DOI: 10.1146/Annurev.Genom.1.1.225 |
0.575 |
|
| 2000 |
Huelsenbeck JP, Rannala B, Masly JP. Accommodating phylogenetic uncertainty in evolutionary studies. Science (New York, N.Y.). 288: 2349-50. PMID 10875916 DOI: 10.1126/Science.288.5475.2349 |
0.692 |
|
| 1999 |
Knowles LL, Futuyma DJ, Eanes WF, Rannala B. INSIGHT INTO SPECIATION FROM HISTORICAL DEMOGRAPHY IN THE PHYTOPHAGOUS BEETLE GENUS OPHRAELLA. Evolution; International Journal of Organic Evolution. 53: 1846-1856. PMID 28565438 DOI: 10.1111/j.1558-5646.1999.tb04567.x |
0.314 |
|
| 1998 |
Rannala B, Huelsenbeck JP, Yang Z, Nielsen R. Taxon sampling and the accuracy of large phylogenies. Systematic Biology. 47: 702-10. PMID 12066312 DOI: 10.1080/106351598260680 |
0.696 |
|
| 1998 |
Bertorelle G, Rannala B. Using rare mutations to estimate population divergence times: A maximum likelihood approach Proceedings of the National Academy of Sciences of the United States of America. 95: 15452-15457. PMID 9860989 DOI: 10.1073/Pnas.95.26.15452 |
0.41 |
|
| 1998 |
Rannala B, Slatkin M. Likelihood analysis of disequilibrium mapping, and related problems. American Journal of Human Genetics. 62: 459-73. PMID 9463316 DOI: 10.1086/301709 |
0.6 |
|
| 1998 |
Yang Z, Rannala B. Bayesian estimation of molecular evolutionary trees. Annals of Human Genetics. 62: 453-464. DOI: 10.1111/J.1469-1809.1998.Ahg625_0453_16.X |
0.412 |
|
| 1997 |
Huelsenbeck JP, Rannala B, Yang Z. STATISTICAL TESTS OF HOST-PARASITE COSPECIATION. Evolution; International Journal of Organic Evolution. 51: 410-419. PMID 28565354 DOI: 10.1111/J.1558-5646.1997.Tb02428.X |
0.738 |
|
| 1997 |
Rannala B. On the Genealogy of a Rare Allele Theoretical Population Biology. 52: 216-223. PMID 9466962 DOI: 10.1006/Tpbi.1997.1332 |
0.374 |
|
| 1997 |
Rannala B, Mountain JL. Detecting immigration by using multilocus genotypes Proceedings of the National Academy of Sciences of the United States of America. 94: 9197-9201. PMID 9256459 DOI: 10.1073/Pnas.94.17.9197 |
0.371 |
|
| 1997 |
Yang Z, Rannala B. Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method. Molecular Biology and Evolution. 14: 717-24. PMID 9214744 DOI: 10.1093/Oxfordjournals.Molbev.A025811 |
0.68 |
|
| 1997 |
Rannala B. Gene Genealogy In A Population Of Variable Size Heredity. 78: 417-423. PMID 9134707 DOI: 10.1038/Hdy.1997.65 |
0.371 |
|
| 1997 |
Huelsenbeck JP, Rannala B. Phylogenetic methods come of age: testing hypotheses in an evolutionary context. Science (New York, N.Y.). 276: 227-32. PMID 9092465 DOI: 10.1126/Science.276.5310.227 |
0.647 |
|
| 1997 |
Rannala B, Yang Z. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. Journal of Molecular Evolution. 43: 304-11. PMID 8703097 DOI: 10.1007/Bf02338839 |
0.701 |
|
| 1997 |
Huelsenbeck JP, Rannala B. Maximum likelihood estimation of phylogeny using stratigraphic data Paleobiology. 23: 174-180. DOI: 10.1017/S0094837300016778 |
0.717 |
|
| 1996 |
Rannala B. The Sampling Theory of Neutral Alleles in an Island Population of Fluctuating Size Theoretical Population Biology. 50: 91-104. PMID 8813016 DOI: 10.1006/Tpbi.1996.0024 |
0.35 |
|
| 1996 |
Rannala B, Hartigan JA. Estimating gene flow in island populations. Genetical Research. 67: 147-58. PMID 8801187 DOI: 10.1017/S0016672300033607 |
0.738 |
|
| 1995 |
Rannala B. Polymorphic Characters and Phylogenetic Analysis: A Statistical Perspective Systematic Biology. 44: 421-429. DOI: 10.1093/Sysbio/44.3.421 |
0.344 |
|
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