Kengo Sato, MD - Publications

Neurosurgery Hamamatsu University, Hamamatsu-shi, Shizuoka-ken, Japan 

29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Kumita W, Sato K, Suzuki Y, Kurotaki Y, Harada T, Zhou Y, Kishi N, Sato K, Aiba A, Sakakibara Y, Feng G, Okano H, Sasaki E. Efficient generation of Knock-in/Knock-out marmoset embryo via CRISPR/Cas9 gene editing. Scientific Reports. 9: 12719. PMID 31481684 DOI: 10.1038/s41598-019-49110-3  0.64
2018 Matsuura Y, Oguri M, Saito Y, Aoe Y, Ogawa A, Akiyama S, Yasuda N, Sato K, Maegaki Y, Hirooka Y. Decreased Wave V Amplitude in Auditory Brainstem Responses of Children with Cerebellar Lesions. Yonago Acta Medica. 61: 220-227. PMID 30636918  0.64
2018 Akiyama M, Sato K, Sakakibara Y. A max-margin training of RNA secondary structure prediction integrated with the thermodynamic model. Journal of Bioinformatics and Computational Biology. 16: 1840025. PMID 30616476 DOI: 10.1142/S0219720018400255  0.64
2018 Hirohara M, Saito Y, Koda Y, Sato K, Sakakibara Y. Convolutional neural network based on SMILES representation of compounds for detecting chemical motif. Bmc Bioinformatics. 19: 526. PMID 30598075 DOI: 10.1186/s12859-018-2523-5  0.64
2017 Aoto Y, Hachiya T, Okumura K, Hase S, Sato K, Wakabayashi Y, Sakakibara Y. DEclust: A statistical approach for obtaining differential expression profiles of multiple conditions. Plos One. 12: e0188285. PMID 29161291 DOI: 10.1371/journal.pone.0188285  0.64
2016 Sato K, Oiwa R, Kumita W, Henry R, Sakuma T, Ito R, Nozu R, Inoue T, Katano I, Sato K, Okahara N, Okahara J, Shimizu Y, Yamamoto M, Hanazawa K, et al. Generation of a Nonhuman Primate Model of Severe Combined Immunodeficiency Using Highly Efficient Genome Editing. Cell Stem Cell. PMID 27374787 DOI: 10.1016/j.stem.2016.06.003  0.64
2016 Tsuchiya M, Amano K, Abe M, Seki M, Hase S, Sato K, Sakakibara Y. SHARAKU: an algorithm for aligning and clustering read mapping profiles of deep sequencing in non-coding RNA processing. Bioinformatics (Oxford, England). 32: i369-i377. PMID 27307639 DOI: 10.1093/bioinformatics/btw273  0.64
2015 Kumozaki S, Sato K, Sakakibara Y. A Machine Learning Based Approach to de novo Sequencing of Glycans from Tandem Mass Spectrometry Spectrum. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 1267-74. PMID 26671799 DOI: 10.1109/TCBB.2015.2430317  0.64
2015 Sato K, Kuroki Y, Kumita W, Fujiyama A, Toyoda A, Kawai J, Iriki A, Sasaki E, Okano H, Sakakibara Y. Resequencing of the common marmoset genome improves genome assemblies and gene-coding sequence analysis. Scientific Reports. 5: 16894. PMID 26586576 DOI: 10.1038/srep16894  0.64
2015 Kamada M, Hase S, Fujii K, Miyake M, Sato K, Kimura K, Sakakibara Y. Whole-Genome Sequencing and Comparative Genome Analysis of Bacillus subtilis Strains Isolated from Non-Salted Fermented Soybean Foods. Plos One. 10: e0141369. PMID 26505996 DOI: 10.1371/journal.pone.0141369  0.64
2015 Afiahayati, Sato K, Sakakibara Y. MetaVelvet-SL: an extension of the Velvet assembler to a de novo metagenomic assembler utilizing supervised learning. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 22: 69-77. PMID 25431440 DOI: 10.1093/dnares/dsu041  0.64
2014 Kamada M, Hase S, Sato K, Toyoda A, Fujiyama A, Sakakibara Y. Whole genome complete resequencing of Bacillus subtilis natto by combining long reads with high-quality short reads. Plos One. 9: e109999. PMID 25329997 DOI: 10.1371/journal.pone.0109999  0.64
2013 Afiahayati, Sato K, Sakakibara Y. An extended genovo metagenomic assembler by incorporating paired-end information. Peerj. 1: e196. PMID 24281688 DOI: 10.7717/peerj.196  0.64
2012 Nakamura M, Hachiya T, Saito Y, Sato K, Sakakibara Y. An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds. Bmc Bioinformatics. 13: S8. PMID 23282285 DOI: 10.1186/1471-2105-13-S17-S8  0.64
2012 Sato K, Kato Y, Akutsu T, Asai K, Sakakibara Y. DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition. Bioinformatics (Oxford, England). 28: 3218-24. PMID 23060618 DOI: 10.1093/bioinformatics/bts612  0.64
2012 Sakakibara Y, Hachiya T, Uchida M, Nagamine N, Sugawara Y, Yokota M, Nakamura M, Popendorf K, Komori T, Sato K. COPICAT: a software system for predicting interactions between proteins and chemical compounds. Bioinformatics (Oxford, England). 28: 745-6. PMID 22257668 DOI: 10.1093/bioinformatics/bts031  0.64
2011 Okada Y, Saito Y, Sato K, Sakakibara Y. Improved measurements of RNA structure conservation with generalized centroid estimators. Frontiers in Genetics. 2: 54. PMID 22303350 DOI: 10.3389/fgene.2011.00054  0.64
2011 Saito Y, Sato K, Sakakibara Y. Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures. Bmc Bioinformatics. 12: S48. PMID 21342580 DOI: 10.1186/1471-2105-12-S1-S48  0.64
2010 Saito Y, Sato K, Sakakibara Y. Robust and accurate prediction of noncoding RNAs from aligned sequences. Bmc Bioinformatics. 11: S3. PMID 21106125 DOI: 10.1186/1471-2105-11-S7-S3  0.64
2010 Okada Y, Sato K, Sakakibara Y. Improvement of structure conservation index with centroid estimators. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 88-97. PMID 19908361  0.64
2009 Sato K, Saito Y, Sakakibara Y. Gradient-based optimization of hyperparameters for base-pairing profile local alignment kernels. Genome Informatics. International Conference On Genome Informatics. 23: 128-38. PMID 20180268  0.64
2009 Morita K, Saito Y, Sato K, Oka K, Hotta K, Sakakibara Y. Genome-wide searching with base-pairing kernel functions for noncoding RNAs: computational and expression analysis of snoRNA families in Caenorhabditis elegans. Nucleic Acids Research. 37: 999-1009. PMID 19129214 DOI: 10.1093/nar/gkn1054  0.64
2008 Sato K, Mituyama T, Asai K, Sakakibara Y. Directed acyclic graph kernels for structural RNA analysis. Bmc Bioinformatics. 9: 318. PMID 18647390 DOI: 10.1186/1471-2105-9-318  0.64
2008 Asai K, Kiryu H, Hamada M, Tabei Y, Sato K, Matsui H, Sakakibara Y, Terai G, Mituyama T. web servers for analyses of RNA sequences. Nucleic Acids Research. 36: W75-8. PMID 18440970 DOI: 10.1093/nar/gkn222  0.64
2008 Sato K, Morita K, Sakakibara Y. PSSMTS: position specific scoring matrices on tree structures. Journal of Mathematical Biology. 56: 201-14. PMID 17619192 DOI: 10.1007/s00285-007-0108-4  0.64
2007 Sakakibara Y, Popendorf K, Ogawa N, Asai K, Sato K. Stem kernels for RNA sequence analyses. Journal of Bioinformatics and Computational Biology. 5: 1103-22. PMID 17933013  0.64
2005 Sato K, Sakakibara Y. RNA secondary structural alignment with conditional random fields. Bioinformatics (Oxford, England). 21: ii237-42. PMID 16204111 DOI: 10.1093/bioinformatics/bti1139  0.64
2005 Matsui H, Sato K, Sakakibara Y. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures. Bioinformatics (Oxford, England). 21: 2611-7. PMID 15784748 DOI: 10.1093/bioinformatics/bti385  0.64
2004 Matsui H, Sato K, Sakakibara Y. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures. Proceedings / Ieee Computational Systems Bioinformatics Conference, Csb. Ieee Computational Systems Bioinformatics Conference. 290-9. PMID 16448022  0.64
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